Rh5AG310600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0018223
Physical Location & Seq
Forward (+)
44652256 .. 44664081
11826 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG310600.1

Sequence Viewer

Length: 666 bp
ATGGAAGCTACTAACTCTGGAGGTGGGACTCAGTTTGGGCTTCATTCGGCAAGACGTACAGGTTGGAAAATGATTGCTCCGGAGTTTCCGACCATTGGGTTAATTAGATCTAGAGAGGAGTGGGTTGCGGAGTGTTCCCAACCGGACAATCAGTCAGAGGAACCAATGGAGGTTGAAGATGGAGGTAGGGACTCAGGGAGTTCGGAAGGGTCAGCCTCCAAGCGGAGGTGCTTGGCAGACAGACGACGGTCAGCGGTCATGGGGGATGAGGTTCAACTGACGGAGGTACCCATTGTGGAATGCACGGATTTCACGGCGGCCTTGAGTTCGATGACCACTGGCACGCCGGCAGTATCTGTGTCAGCTTTGAATGCTATCCCTGCTGCACGAGCGCAACATTCAACTCCGACATTCTTGGGAGTCGTCAACAGTGATGACAGCAAAGGGGTGGATTTGTCCGCTGAGGTTACAGCTGAAGTTAACTACAAGCAGGGTGGGCCCATTGCTGGGCGCAAGTCTCAATACAAGCCCACAAATTCCTCCTCGACTGCGCTGCAACATGTATGCCTCTTGCCGAAAAGGAACCTTGATCTGAAACCCACCGACGTCAATACCAGACAATCGCCGATCAAGATCCTTGATCCTAAATCAATCAACGCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

221

Amino Acids

23.59

Weight (kDa)

5.7

Isoelectric Point (pI)

61.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018223)

Species Orthologous Gene IDs
rosa_laevigata RLG00000009410 RLG00000020622 RLG00000020623
rosa_multiflora Rmu_sc0006702.1_g000001
rosa_rugosa Rorug05G0215500
rosa_samantha Rh1AG254000 Rh1AG290000 Rh2CG265800 Rh5AG310600 Rh5BG130400 Rh6AG224100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 609
Acc65I GGTACC 1 cut(s) 286
AccB1I GGYRCC 1 cut(s) 286
AccIII TCCGGA 1 cut(s) 79
AciI CCGC 5 cut(s) 128, 223, 254, 317, 459
AclWI GGATC 2 cut(s) 628, 635
AcsI RAATTY 1 cut(s) 535
AcuI CTGAAG 1 cut(s) 495
AcyI GRCGYC 1 cut(s) 606
AfaI GTAC 2 cut(s) 58, 288
AfiI CCNNNNNNNGG 5 cut(s) 95, 222, 225, 506, 507
AflIII ACRYGT 1 cut(s) 559
AgsI TTSAA 4 cut(s) 176, 275, 370, 402
AhdI GACNNNNNGTC 1 cut(s) 151
AluBI AGCT 3 cut(s) 8, 365, 473
AluI AGCT 3 cut(s) 8, 365, 473
Alw26I GTCTC 1 cut(s) 522
AlwI GGATC 2 cut(s) 628, 635
AlwNI CAGNNNCTG 1 cut(s) 356
Aor13HI TCCGGA 1 cut(s) 79
AoxI GGCC 2 cut(s) 318, 497
ApaI GGGCCC 1 cut(s) 501
ApeKI GCWGC 2 cut(s) 383, 553
ApoI RAATTY 1 cut(s) 535
Asp718I GGTACC 1 cut(s) 286
AspLEI GCGC 3 cut(s) 394, 513, 553
AspS9I GGNCC 2 cut(s) 497, 498
BaeGI GKGCMC 1 cut(s) 501
BaeI ACNNNNGTAYC 2 cut(s) 270, 303
BanI GGYRCC 1 cut(s) 286
BanII GRGCYC 1 cut(s) 501
BauI CACGAG 1 cut(s) 387
BbvCI CCTCAGC 1 cut(s) 462
BbvI GCAGC 2 cut(s) 370, 540
BccI CCATC 1 cut(s) 173
BceAI ACGGC 1 cut(s) 330
BcgI CGANNNNNNTGC 2 cut(s) 535, 569
BcoDI GTCTC 1 cut(s) 522
BfaI CTAG 1 cut(s) 111
BglII AGATCT 1 cut(s) 107
BisI GCNGC 3 cut(s) 318, 384, 554
BlsI GCNGC 3 cut(s) 319, 385, 555
BmeRI GACNNNNNGTC 1 cut(s) 151
BmgT120I GGNCC 2 cut(s) 497, 498
BmiI GGNNCC 4 cut(s) 162, 288, 499, 584
BoxI GACNNNNGTC 1 cut(s) 247
BpmI CTGGAG 1 cut(s) 39
Bpu10I CCTNAGC 1 cut(s) 462
BpuEI CTTGAG 1 cut(s) 343
BsaBI GATNNNNATC 1 cut(s) 632
BsaHI GRCGYC 1 cut(s) 606
BsaWI WCCGGW 2 cut(s) 79, 142
Bsc4I CCNNNNNNNGG 5 cut(s) 95, 222, 225, 506, 507
Bse118I RCCGGY 1 cut(s) 346
Bse1I ACTGG 1 cut(s) 343
Bse3DI GCAATG 1 cut(s) 501
Bse8I GATNNNNATC 1 cut(s) 632
BseAI TCCGGA 1 cut(s) 79
BseGI GGATG 1 cut(s) 271
BseJI GATNNNNATC 1 cut(s) 632
BseLI CCNNNNNNNGG 5 cut(s) 95, 222, 225, 506, 507
BseMI GCAATG 1 cut(s) 501
BseMII CTCAG 3 cut(s) 44, 207, 453
BseNI ACTGG 1 cut(s) 343
BseRI GAGGAG 2 cut(s) 131, 532
BseSI GKGCMC 1 cut(s) 501
BseXI GCAGC 2 cut(s) 370, 540
BseYI CCCAGC 1 cut(s) 506
BsgI GTGCAG 1 cut(s) 369
BshFI GGCC 2 cut(s) 320, 499
BshNI GGYRCC 1 cut(s) 286
BsiSI CCGG 3 cut(s) 80, 143, 347
BslFI GGGAC 2 cut(s) 40, 203
BslI CCNNNNNNNGG 5 cut(s) 95, 222, 225, 506, 507
BsmAI GTCTC 1 cut(s) 522
BsmFI GGGAC 2 cut(s) 40, 203
BsmI GAATGC 2 cut(s) 305, 376
BsnI GGCC 2 cut(s) 320, 499
Bsp120I GGGCCC 1 cut(s) 497
Bsp1286I GDGCHC 1 cut(s) 501
Bsp13I TCCGGA 1 cut(s) 79
Bsp143I GATC 5 cut(s) 107, 589, 627, 633, 640
BspACI CCGC 5 cut(s) 128, 223, 254, 317, 459
BspANI GGCC 2 cut(s) 320, 499
BspCNI CTCAG 3 cut(s) 43, 206, 454
BspEI TCCGGA 1 cut(s) 79
BspLI GGNNCC 4 cut(s) 162, 288, 499, 584
BspPI GGATC 2 cut(s) 628, 635
BspT107I GGYRCC 1 cut(s) 286
BsrDI GCAATG 1 cut(s) 501
BsrFI RCCGGY 1 cut(s) 346
BsrI ACTGG 1 cut(s) 343
BssAI RCCGGY 1 cut(s) 346
BssMI GATC 5 cut(s) 107, 589, 627, 633, 640
BssNI GRCGYC 1 cut(s) 606
BssSI CACGAG 1 cut(s) 387
Bst2BI CACGAG 1 cut(s) 387
Bst4CI ACNGT 2 cut(s) 249, 431
BstACI GRCGYC 1 cut(s) 606
BstC8I GCNNGC 2 cut(s) 344, 348
BstDEI CTNAG 3 cut(s) 30, 193, 462
BstF5I GGATG 1 cut(s) 271
BstHHI GCGC 3 cut(s) 394, 513, 553
BstKTI GATC 5 cut(s) 110, 592, 630, 636, 643
BstMAI GTCTC 1 cut(s) 522
BstMBI GATC 5 cut(s) 107, 589, 627, 633, 640
BstMWI GCNNNNNNNGC 4 cut(s) 371, 380, 389, 496
BstNSI RCATGY 1 cut(s) 563
BstPAI GACNNNNGTC 1 cut(s) 247
BstSLI GKGCMC 1 cut(s) 501
BstV1I GCAGC 2 cut(s) 370, 540
BstX2I RGATCY 2 cut(s) 107, 633
BstYI RGATCY 2 cut(s) 107, 633
BsuRI GGCC 2 cut(s) 320, 499
BtsCI GGATG 1 cut(s) 271
BtsIMutI CAGTG 2 cut(s) 336, 436
Cac8I GCNNGC 2 cut(s) 344, 348
CaiI CAGNNNCTG 1 cut(s) 356
CfoI GCGC 3 cut(s) 394, 513, 553
Cfr10I RCCGGY 1 cut(s) 346
Cfr13I GGNCC 2 cut(s) 497, 498
Csp6I GTAC 2 cut(s) 57, 287
CspCI CAANNNNNGTGG 2 cut(s) 475, 510
CviAII CATG 2 cut(s) 259, 560
CviJI RGCY 8 cut(s) 8, 40, 215, 320, 365, 473, 499, 529
CviKI_1 RGCY 8 cut(s) 8, 40, 215, 320, 365, 473, 499, 529
CviQI GTAC 2 cut(s) 57, 287
DdeI CTNAG 3 cut(s) 30, 193, 462
DpnI GATC 5 cut(s) 109, 591, 629, 635, 642
DpnII GATC 5 cut(s) 107, 589, 627, 633, 640
DriI GACNNNNNGTC 1 cut(s) 151
Eam1105I GACNNNNNGTC 1 cut(s) 151
Eco24I GRGCYC 1 cut(s) 501
Eco57I CTGAAG 1 cut(s) 495
EcoT38I GRGCYC 1 cut(s) 501
FaeI CATG 2 cut(s) 262, 563
FaiI YATR 3 cut(s) 260, 561, 565
FaqI GGGAC 2 cut(s) 40, 203
FatI CATG 2 cut(s) 258, 559
Fnu4HI GCNGC 3 cut(s) 318, 384, 554
FokI GGATG 1 cut(s) 278
FriOI GRGCYC 1 cut(s) 501
Fsp4HI GCNGC 3 cut(s) 318, 384, 554
FspBI CTAG 1 cut(s) 111
GlaI GCGC 3 cut(s) 393, 512, 552
GluI GCNGC 3 cut(s) 318, 384, 554
GsaI CCCAGC 1 cut(s) 510
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 2 cut(s) 320, 499
HapII CCGG 3 cut(s) 80, 143, 347
HhaI GCGC 3 cut(s) 394, 513, 553
Hin1I GRCGYC 1 cut(s) 606
Hin1II CATG 2 cut(s) 262, 563
Hin6I GCGC 3 cut(s) 392, 511, 551
HinP1I GCGC 3 cut(s) 392, 511, 551
HincII GTYRAC 2 cut(s) 427, 481
HindII GTYRAC 2 cut(s) 427, 481
HinfI GANTC 3 cut(s) 28, 191, 420
HpaI GTTAAC 1 cut(s) 481
HpaII CCGG 3 cut(s) 80, 143, 347
Hpy166II GTNNAC 2 cut(s) 427, 481
Hpy188I TCNGA 5 cut(s) 90, 157, 205, 408, 594
Hpy188III TCNNGA 4 cut(s) 18, 80, 111, 631
Hpy8I GTNNAC 2 cut(s) 427, 481
Hpy99I CGWCG 2 cut(s) 249, 608
HpyAV CCTTC 1 cut(s) 200
HpyCH4III ACNGT 2 cut(s) 249, 431
HpyCH4IV ACGT 2 cut(s) 55, 606
HpyCH4V TGCA 3 cut(s) 303, 386, 556
HpyF10VI GCNNNNNNNGC 4 cut(s) 371, 380, 389, 496
HpyF3I CTNAG 3 cut(s) 30, 193, 462
HpySE526I ACGT 2 cut(s) 55, 606
Hsp92I GRCGYC 1 cut(s) 606
Hsp92II CATG 2 cut(s) 262, 563
HspAI GCGC 3 cut(s) 392, 511, 551
Kpn2I TCCGGA 1 cut(s) 79
KpnI GGTACC 1 cut(s) 290
KroI GCCGGC 1 cut(s) 346
KroNI GCCGGC 1 cut(s) 348
KspAI GTTAAC 1 cut(s) 481
Kzo9I GATC 5 cut(s) 107, 589, 627, 633, 640
LmnI GCTCC 1 cut(s) 82
Lsp1109I GCAGC 2 cut(s) 370, 540
MaeI CTAG 1 cut(s) 111
MaeII ACGT 2 cut(s) 55, 606
MaeIII GTNAC 1 cut(s) 466
MalI GATC 5 cut(s) 109, 591, 629, 635, 642
MboI GATC 5 cut(s) 107, 589, 627, 633, 640
MboII GAAGA 1 cut(s) 188
MflI RGATCY 2 cut(s) 107, 633
MhlI GDGCHC 1 cut(s) 501
MluCI AATT 2 cut(s) 102, 535
MlyI GAGTC 3 cut(s) 22, 185, 429
MmeI TCCRAC 3 cut(s) 44, 113, 431
MroI TCCGGA 1 cut(s) 79
MroNI GCCGGC 1 cut(s) 346
MseI TTAA 2 cut(s) 101, 480
MspA1I CMGCKG 3 cut(s) 254, 461, 473
MspI CCGG 3 cut(s) 80, 143, 347
Mva1269I GAATGC 2 cut(s) 305, 376
MwoI GCNNNNNNNGC 4 cut(s) 371, 380, 389, 496
NaeI GCCGGC 1 cut(s) 348
NdeII GATC 5 cut(s) 107, 589, 627, 633, 640
NgoMIV GCCGGC 1 cut(s) 346
NlaIII CATG 2 cut(s) 262, 563
NlaIV GGNNCC 4 cut(s) 162, 288, 499, 584
NspI RCATGY 1 cut(s) 563
PciI ACATGT 1 cut(s) 559
PctI GAATGC 2 cut(s) 305, 376
PdiI GCCGGC 1 cut(s) 348
PkrI GCNGC 3 cut(s) 319, 385, 555
PleI GAGTC 3 cut(s) 22, 185, 428
PpsI GAGTC 3 cut(s) 22, 185, 428
PscI ACATGT 1 cut(s) 559
PshAI GACNNNNGTC 1 cut(s) 247
PspFI CCCAGC 1 cut(s) 506
PspN4I GGNNCC 4 cut(s) 162, 288, 499, 584
PspOMI GGGCCC 1 cut(s) 497
PspPI GGNCC 2 cut(s) 497, 498
PstNI CAGNNNCTG 1 cut(s) 356
PsuI RGATCY 2 cut(s) 107, 633
PvuII CAGCTG 1 cut(s) 473
RsaI GTAC 2 cut(s) 58, 288
RsaNI GTAC 2 cut(s) 57, 287
SaqAI TTAA 2 cut(s) 101, 480
SatI GCNGC 3 cut(s) 318, 384, 554
Sau3AI GATC 5 cut(s) 107, 589, 627, 633, 640
Sau96I GGNCC 2 cut(s) 497, 498
SchI GAGTC 3 cut(s) 22, 185, 429
SduI GDGCHC 1 cut(s) 501
SmlI CTYRAG 1 cut(s) 322
SmoI CTYRAG 1 cut(s) 322
Sse9I AATT 2 cut(s) 102, 535
SsiI CCGC 5 cut(s) 128, 223, 254, 317, 459
SspMI CTAG 1 cut(s) 111
TaaI ACNGT 2 cut(s) 249, 431
TaiI ACGT 2 cut(s) 58, 609
TaqI TCGA 2 cut(s) 329, 545
TasI AATT 2 cut(s) 102, 535
TauI GCSGC 1 cut(s) 320
Tru1I TTAA 2 cut(s) 101, 480
Tru9I TTAA 2 cut(s) 101, 480
TscAI CASTG 2 cut(s) 343, 436
TseI GCWGC 2 cut(s) 383, 553
TspDTI ATGAA 1 cut(s) 32
TspGWI ACGGA 2 cut(s) 296, 320
TspRI CASTG 2 cut(s) 343, 436
XapI RAATTY 1 cut(s) 535
XbaI TCTAGA 1 cut(s) 110
XceI RCATGY 1 cut(s) 563
XspI CTAG 1 cut(s) 111
ZraI GACGTC 1 cut(s) 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.