Rh2CG265800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0018223
Physical Location & Seq
Forward (+)
28577582 .. 28587411
9830 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG265800.1

Sequence Viewer

Length: 663 bp
ATGATCGGGCTGACTAGGACCCGGGAGGAGTGGGAGGAGGATTCCTGCCAACCGGCACCTCGAGATGCGAATGACATGGAGATAGTGGTAGAGAGTACAAAGGAGGGGAGCACCGGTGAGCCAACCCAAAAACGGAGGAAGCTAAAGATGGGGCGGGGGACGACGACGGCGGAGGGGCTCACGGAGGTTCCTATTATGGAATGTTCTTCTTTAGGGGGGGCAGTAATGTCGAGCTCGGTAATTGCGCAATCATCATTGAAGTTACCAGTTGGGGATAGTCCTCATTTGATTGTGGATCAGGATTTAATTCACAAGCAGTCAAAATTGGCGGATCCTACAATCAAGGAGTTGATTAGGAAGGGGAGTCAGGGTGCAACTGGAAAGTCAAAGAAAGTGGGGTCGGGTGATTCTCAATCCATGCAAAGGTTCTTGAAGGATGGTCAGACTTGTTCCATGGTGGATGACCATACTGAAGCCCAAAATGAGATTAGACCAAGTGGGGGTCAGAGCAAGGCCAACCTGGCTCCGTCAATTAAGAGGCCTCATGAGAAGATTCTAGAATGTTCCAAGAGTTCTAAGAAGTCTATATTCATGTATGCGCGTGCGATTCCAGCCCAAGCATCCTCTGGCTTCCGTAGAAAGGCCTGGAATGAAGGTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

220

Amino Acids

23.88

Weight (kDa)

8.94

Isoelectric Point (pI)

61.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018223)

Species Orthologous Gene IDs
rosa_laevigata RLG00000009410 RLG00000020622 RLG00000020623
rosa_multiflora Rmu_sc0006702.1_g000001
rosa_rugosa Rorug05G0215500
rosa_samantha Rh1AG254000 Rh1AG290000 Rh2CG265800 Rh5AG310600 Rh5BG130400 Rh6AG224100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 246
AccB1I GGYRCC 1 cut(s) 55
AccII CGCG 1 cut(s) 601
AciI CCGC 3 cut(s) 154, 170, 329
AclWI GGATC 3 cut(s) 303, 326, 339
AcuI CTGAAG 1 cut(s) 492
AfaI GTAC 1 cut(s) 97
AfiI CCNNNNNNNGG 4 cut(s) 132, 423, 500, 640
AgeI ACCGGT 1 cut(s) 113
AgsI TTSAA 2 cut(s) 259, 433
AjnI CCWGG 2 cut(s) 519, 644
AluBI AGCT 2 cut(s) 142, 234
AluI AGCT 2 cut(s) 142, 234
Alw21I GWGCWC 2 cut(s) 113, 236
AlwI GGATC 3 cut(s) 303, 326, 339
Ama87I CYCGRG 2 cut(s) 21, 60
AoxI GGCC 3 cut(s) 513, 539, 642
AsiGI ACCGGT 1 cut(s) 113
AspLEI GCGC 2 cut(s) 247, 601
AspS9I GGNCC 1 cut(s) 18
AsuC2I CCSGG 2 cut(s) 22, 23
AsuHPI GGTGA 2 cut(s) 128, 416
AvaI CYCGRG 2 cut(s) 21, 60
AvaII GGWCC 1 cut(s) 18
BamHI GGATCC 1 cut(s) 331
BanI GGYRCC 1 cut(s) 55
BanII GRGCYC 2 cut(s) 180, 236
Bbv12I GWGCWC 2 cut(s) 113, 236
BccI CCATC 2 cut(s) 142, 431
BceAI ACGGC 1 cut(s) 183
BcgI CGANNNNNNTGC 2 cut(s) 210, 244
BciT130I CCWGG 2 cut(s) 521, 646
BcnI CCSGG 2 cut(s) 22, 23
BfaI CTAG 2 cut(s) 15, 557
BglI GCCNNNNNGGC 1 cut(s) 521
Bme1390I CCNGG 4 cut(s) 22, 23, 521, 646
Bme18I GGWCC 1 cut(s) 18
BmeT110I CYCGRG 2 cut(s) 21, 60
BmgT120I GGNCC 1 cut(s) 18
BmiI GGNNCC 5 cut(s) 20, 57, 189, 333, 525
BmrFI CCNGG 4 cut(s) 22, 23, 521, 646
BmsI GCATC 2 cut(s) 55, 629
BpuMI CCSGG 2 cut(s) 22, 23
BsaJI CCNNGG 2 cut(s) 21, 453
BsaWI WCCGGW 1 cut(s) 113
BsaXI ACNNNNNCTCC 4 cut(s) 100, 130, 355, 385
Bsc4I CCNNNNNNNGG 4 cut(s) 132, 423, 500, 640
Bse118I RCCGGY 2 cut(s) 52, 113
Bse1I ACTGG 2 cut(s) 266, 382
BseBI CCWGG 2 cut(s) 521, 646
BseDI CCNNGG 2 cut(s) 21, 453
BseGI GGATG 3 cut(s) 442, 466, 620
BseLI CCNNNNNNNGG 4 cut(s) 132, 423, 500, 640
BseNI ACTGG 2 cut(s) 266, 382
BseRI GAGGAG 2 cut(s) 41, 50
Bsh1236I CGCG 1 cut(s) 601
BshFI GGCC 3 cut(s) 515, 541, 644
BshNI GGYRCC 1 cut(s) 55
BshTI ACCGGT 1 cut(s) 113
BsiHKAI GWGCWC 2 cut(s) 113, 236
BsiHKCI CYCGRG 2 cut(s) 21, 60
BsiSI CCGG 3 cut(s) 22, 53, 114
BslFI GGGAC 1 cut(s) 172
BslI CCNNNNNNNGG 4 cut(s) 132, 423, 500, 640
BsmFI GGGAC 1 cut(s) 172
BsnI GGCC 3 cut(s) 515, 541, 644
BsoBI CYCGRG 2 cut(s) 21, 60
Bsp1286I GDGCHC 3 cut(s) 113, 180, 236
Bsp143I GATC 3 cut(s) 3, 295, 331
Bsp19I CCATGG 1 cut(s) 453
BspACI CCGC 3 cut(s) 154, 170, 329
BspANI GGCC 3 cut(s) 515, 541, 644
BspFNI CGCG 1 cut(s) 601
BspHI TCATGA 1 cut(s) 544
BspLI GGNNCC 5 cut(s) 20, 57, 189, 333, 525
BspPI GGATC 3 cut(s) 303, 326, 339
BspT107I GGYRCC 1 cut(s) 55
BsrFI RCCGGY 2 cut(s) 52, 113
BsrI ACTGG 2 cut(s) 266, 382
BssAI RCCGGY 2 cut(s) 52, 113
BssECI CCNNGG 2 cut(s) 21, 453
BssMI GATC 3 cut(s) 3, 295, 331
BssT1I CCWWGG 1 cut(s) 453
Bst2UI CCWGG 2 cut(s) 521, 646
BstC8I GCNNGC 1 cut(s) 603
BstDEI CTNAG 1 cut(s) 576
BstDSI CCRYGG 1 cut(s) 453
BstF5I GGATG 3 cut(s) 442, 466, 620
BstFNI CGCG 1 cut(s) 601
BstHHI GCGC 2 cut(s) 247, 601
BstKTI GATC 3 cut(s) 6, 298, 334
BstMBI GATC 3 cut(s) 3, 295, 331
BstMWI GCNNNNNNNGC 2 cut(s) 521, 611
BstNI CCWGG 2 cut(s) 521, 646
BstSCI CCNGG 4 cut(s) 20, 21, 519, 644
BstUI CGCG 1 cut(s) 601
BstX2I RGATCY 1 cut(s) 331
BstYI RGATCY 1 cut(s) 331
BsuRI GGCC 3 cut(s) 515, 541, 644
BtgI CCRYGG 1 cut(s) 453
BtsCI GGATG 3 cut(s) 442, 466, 620
Cac8I GCNNGC 1 cut(s) 603
CciI TCATGA 1 cut(s) 544
CfoI GCGC 2 cut(s) 247, 601
Cfr10I RCCGGY 2 cut(s) 52, 113
Cfr13I GGNCC 1 cut(s) 18
Cfr9I CCCGGG 1 cut(s) 21
Csp6I GTAC 1 cut(s) 96
CspAI ACCGGT 1 cut(s) 113
CspCI CAANNNNNGTGG 2 cut(s) 375, 410
CviAII CATG 5 cut(s) 76, 418, 454, 545, 592
CviQI GTAC 1 cut(s) 96
DdeI CTNAG 1 cut(s) 576
DpnI GATC 3 cut(s) 5, 297, 333
DpnII GATC 3 cut(s) 3, 295, 331
EciI GGCGGA 2 cut(s) 185, 344
Ecl136II GAGCTC 1 cut(s) 234
Eco130I CCWWGG 1 cut(s) 453
Eco147I AGGCCT 2 cut(s) 541, 644
Eco24I GRGCYC 2 cut(s) 180, 236
Eco47I GGWCC 1 cut(s) 18
Eco53kI GAGCTC 1 cut(s) 234
Eco57I CTGAAG 1 cut(s) 492
Eco88I CYCGRG 2 cut(s) 21, 60
EcoICRI GAGCTC 1 cut(s) 234
EcoO109I RGGNCCY 1 cut(s) 18
EcoRII CCWGG 2 cut(s) 519, 644
EcoT14I CCWWGG 1 cut(s) 453
EcoT38I GRGCYC 2 cut(s) 180, 236
ErhI CCWWGG 1 cut(s) 453
FaeI CATG 5 cut(s) 79, 421, 457, 548, 595
FaiI YATR 9 cut(s) 77, 197, 419, 455, 468, 546, 587, 593, 597
FaqI GGGAC 1 cut(s) 172
FatI CATG 5 cut(s) 75, 417, 453, 544, 591
FauI CCCGC 1 cut(s) 147
FokI GGATG 3 cut(s) 449, 473, 607
FriOI GRGCYC 2 cut(s) 180, 236
FspBI CTAG 2 cut(s) 15, 557
FspI TGCGCA 1 cut(s) 246
GlaI GCGC 2 cut(s) 246, 600
HaeIII GGCC 3 cut(s) 515, 541, 644
HapII CCGG 3 cut(s) 22, 53, 114
HhaI GCGC 2 cut(s) 247, 601
Hin1II CATG 5 cut(s) 79, 421, 457, 548, 595
Hin6I GCGC 2 cut(s) 245, 599
HinP1I GCGC 2 cut(s) 245, 599
HinfI GANTC 5 cut(s) 41, 364, 407, 553, 607
HpaII CCGG 3 cut(s) 22, 53, 114
HphI GGTGA 2 cut(s) 128, 416
Hpy188I TCNGA 2 cut(s) 444, 507
Hpy188III TCNNGA 5 cut(s) 62, 299, 430, 545, 557
Hpy99I CGWCG 2 cut(s) 166, 169
HpyAV CCTTC 3 cut(s) 352, 427, 647
HpyCH4V TGCA 2 cut(s) 374, 421
HpyF10VI GCNNNNNNNGC 2 cut(s) 521, 611
HpyF3I CTNAG 1 cut(s) 576
Hsp92II CATG 5 cut(s) 79, 421, 457, 548, 595
HspAI GCGC 2 cut(s) 245, 599
Kzo9I GATC 3 cut(s) 3, 295, 331
LmnI GCTCC 2 cut(s) 108, 529
LweI GCATC 2 cut(s) 55, 629
MaeI CTAG 2 cut(s) 15, 557
MaeIII GTNAC 1 cut(s) 261
MalI GATC 3 cut(s) 5, 297, 333
MboI GATC 3 cut(s) 3, 295, 331
MboII GAAGA 2 cut(s) 198, 562
MflI RGATCY 1 cut(s) 331
MhlI GDGCHC 3 cut(s) 113, 180, 236
MluCI AATT 4 cut(s) 240, 306, 323, 531
MlyI GAGTC 1 cut(s) 373
MseI TTAA 2 cut(s) 305, 534
MspI CCGG 3 cut(s) 22, 53, 114
MspR9I CCNGG 4 cut(s) 22, 23, 521, 646
MvaI CCWGG 2 cut(s) 521, 646
MvnI CGCG 1 cut(s) 601
MwoI GCNNNNNNNGC 2 cut(s) 521, 611
NciI CCSGG 2 cut(s) 22, 23
NcoI CCATGG 1 cut(s) 453
NdeII GATC 3 cut(s) 3, 295, 331
NlaIII CATG 5 cut(s) 79, 421, 457, 548, 595
NlaIV GGNNCC 5 cut(s) 20, 57, 189, 333, 525
NsbI TGCGCA 1 cut(s) 246
PaeR7I CTCGAG 1 cut(s) 60
PagI TCATGA 1 cut(s) 544
PceI AGGCCT 2 cut(s) 541, 644
PfeI GAWTC 4 cut(s) 41, 407, 553, 607
PinAI ACCGGT 1 cut(s) 113
PleI GAGTC 1 cut(s) 372
PpsI GAGTC 1 cut(s) 372
PpuMI RGGWCCY 1 cut(s) 18
Psp124BI GAGCTC 1 cut(s) 236
Psp5II RGGWCCY 1 cut(s) 18
Psp6I CCWGG 2 cut(s) 519, 644
PspGI CCWGG 2 cut(s) 519, 644
PspN4I GGNNCC 5 cut(s) 20, 57, 189, 333, 525
PspPI GGNCC 1 cut(s) 18
PspPPI RGGWCCY 1 cut(s) 18
PsuI RGATCY 1 cut(s) 331
RsaI GTAC 1 cut(s) 97
RsaNI GTAC 1 cut(s) 96
SacI GAGCTC 1 cut(s) 236
SaqAI TTAA 2 cut(s) 305, 534
Sau3AI GATC 3 cut(s) 3, 295, 331
Sau96I GGNCC 1 cut(s) 18
SchI GAGTC 1 cut(s) 373
ScrFI CCNGG 4 cut(s) 22, 23, 521, 646
SduI GDGCHC 3 cut(s) 113, 180, 236
SetI ASST 7 cut(s) 61, 144, 189, 236, 428, 522, 658
SfaNI GCATC 2 cut(s) 55, 629
Sfr274I CTCGAG 1 cut(s) 60
SgrAI CRCCGGYG 1 cut(s) 113
SinI GGWCC 1 cut(s) 18
SlaI CTCGAG 1 cut(s) 60
SmaI CCCGGG 1 cut(s) 23
SmlI CTYRAG 1 cut(s) 60
SmoI CTYRAG 1 cut(s) 60
Sse9I AATT 4 cut(s) 240, 306, 323, 531
SseBI AGGCCT 2 cut(s) 541, 644
SsiI CCGC 3 cut(s) 154, 170, 329
SspMI CTAG 2 cut(s) 15, 557
SstI GAGCTC 1 cut(s) 236
StuI AGGCCT 2 cut(s) 541, 644
StyD4I CCNGG 4 cut(s) 20, 21, 519, 644
StyI CCWWGG 1 cut(s) 453
TaqI TCGA 2 cut(s) 61, 230
TasI AATT 4 cut(s) 240, 306, 323, 531
TatI WGTACW 1 cut(s) 95
TfiI GAWTC 4 cut(s) 41, 407, 553, 607
Tru1I TTAA 2 cut(s) 305, 534
Tru9I TTAA 2 cut(s) 305, 534
TspDTI ATGAA 1 cut(s) 580
TspGWI ACGGA 4 cut(s) 148, 197, 516, 623
TspMI CCCGGG 1 cut(s) 21
VpaK11BI GGWCC 1 cut(s) 18
XbaI TCTAGA 1 cut(s) 556
XcmI CCANNNNNNNNNTGG 1 cut(s) 623
XhoI CTCGAG 1 cut(s) 60
XmaI CCCGGG 1 cut(s) 21
XspI CTAG 2 cut(s) 15, 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.