RLG00000020623

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0018223
Physical Location & Seq
Reverse (-)
66850319 .. 66850929
611 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020623

Sequence Viewer

Length: 516 bp
ATGCTTCCGGTGGAGGTGGCACTAGATTTGGTCTCTATCAAGCAAAAAAGATGGTCATCATTGGTGCATTCAATACTAGGAGGAAGTCCCATGATTGTGAATCCGAATTCAATGCAAAAAACGTCAGCGATAGAAGAGAATCAACCTGAGTGGATCGCTAGTAATAAGCATGATTGTACAGATCCTGAATTAAAGGGATTGAGTTGGAAAGCTAGTGGAAAGGCGTTGATTGGGATGGATGGTAAGAACCACTCTAATTTAGCTGCACATTGTGCGAATATGAGGTCAACCAAGCCGAAGTCTGGGCCCGGGCCCAAAAAATGCCGTAAAGTGAAGGCCACGGTGGACTGTGCAGTAGAAGCCCAAATGAAGTCTAAGCCACAGGGGGGCCAGAAACAAGTCGGTCTGTCCCTTGCAATTAGTAGGCCAACAGGGAAGGTTCTGGAAATTTCCAAGAAATCTAGCAGCAAGGGTTTTCTTGTTCGGAAGAATGTTAGCTCCACAAGTCGAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

18.42

Weight (kDa)

10.1

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018223)

Species Orthologous Gene IDs
rosa_laevigata RLG00000009410 RLG00000020622 RLG00000020623
rosa_multiflora Rmu_sc0006702.1_g000001
rosa_rugosa Rorug05G0215500
rosa_samantha Rh1AG254000 Rh1AG290000 Rh2CG265800 Rh5AG310600 Rh5BG130400 Rh6AG224100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 161, 176
AcsI RAATTY 2 cut(s) 106, 447
AdeI CACNNNGTG 1 cut(s) 272
AfaI GTAC 1 cut(s) 178
AfiI CCNNNNNNNGG 2 cut(s) 302, 386
AgsI TTSAA 2 cut(s) 72, 111
AluBI AGCT 3 cut(s) 212, 263, 498
AluI AGCT 3 cut(s) 212, 263, 498
Alw26I GTCTC 1 cut(s) 37
AlwI GGATC 2 cut(s) 161, 176
AlwNI CAGNNNCTG 1 cut(s) 185
Ama87I CYCGRG 1 cut(s) 308
AoxI GGCC 5 cut(s) 305, 311, 336, 388, 425
ApaI GGGCCC 2 cut(s) 309, 315
ApeKI GCWGC 2 cut(s) 263, 465
ApoI RAATTY 2 cut(s) 106, 447
ArsI GACNNNNNNTTYG 2 cut(s) 269, 301
AspS9I GGNCC 5 cut(s) 305, 306, 311, 312, 388
AsuC2I CCSGG 2 cut(s) 309, 310
AvaI CYCGRG 1 cut(s) 308
BaeGI GKGCMC 2 cut(s) 309, 315
BanII GRGCYC 2 cut(s) 309, 315
BbvI GCAGC 2 cut(s) 250, 477
BccI CCATC 3 cut(s) 45, 229, 233
BceAI ACGGC 1 cut(s) 309
BcgI CGANNNNNNTGC 2 cut(s) 94, 128
BcnI CCSGG 2 cut(s) 309, 310
BcoDI GTCTC 1 cut(s) 37
BfaI CTAG 5 cut(s) 23, 77, 159, 213, 462
BisI GCNGC 2 cut(s) 264, 466
BlsI GCNGC 2 cut(s) 265, 467
Bme1390I CCNGG 2 cut(s) 309, 310
BmeT110I CYCGRG 1 cut(s) 308
BmgT120I GGNCC 5 cut(s) 305, 306, 311, 312, 388
BmiI GGNNCC 3 cut(s) 307, 313, 389
BmrFI CCNGG 2 cut(s) 309, 310
BpuMI CCSGG 2 cut(s) 309, 310
BsaBI GATNNNNATC 1 cut(s) 55
BsaI GGTCTC 1 cut(s) 37
BsaJI CCNNGG 2 cut(s) 308, 339
BsaWI WCCGGW 1 cut(s) 7
Bsc4I CCNNNNNNNGG 2 cut(s) 302, 386
Bse8I GATNNNNATC 1 cut(s) 55
BseDI CCNNGG 2 cut(s) 308, 339
BseGI GGATG 2 cut(s) 240, 244
BseJI GATNNNNATC 1 cut(s) 55
BseLI CCNNNNNNNGG 2 cut(s) 302, 386
BseMII CTCAG 1 cut(s) 138
BseSI GKGCMC 2 cut(s) 309, 315
BseXI GCAGC 2 cut(s) 250, 477
BsgI GTGCAG 2 cut(s) 249, 372
BshFI GGCC 5 cut(s) 307, 313, 338, 390, 427
BsiHKCI CYCGRG 1 cut(s) 308
BsiSI CCGG 2 cut(s) 8, 309
BslFI GGGAC 2 cut(s) 72, 394
BslI CCNNNNNNNGG 2 cut(s) 302, 386
BsmAI GTCTC 1 cut(s) 37
BsmFI GGGAC 2 cut(s) 72, 394
BsmI GAATGC 1 cut(s) 67
BsnI GGCC 5 cut(s) 307, 313, 338, 390, 427
Bso31I GGTCTC 1 cut(s) 37
BsoBI CYCGRG 1 cut(s) 308
Bsp120I GGGCCC 2 cut(s) 305, 311
Bsp1286I GDGCHC 2 cut(s) 309, 315
Bsp1407I TGTACA 1 cut(s) 176
Bsp143I GATC 2 cut(s) 153, 181
BspANI GGCC 5 cut(s) 307, 313, 338, 390, 427
BspCNI CTCAG 1 cut(s) 139
BspLI GGNNCC 3 cut(s) 307, 313, 389
BspPI GGATC 2 cut(s) 161, 176
BspTNI GGTCTC 1 cut(s) 37
BsrGI TGTACA 1 cut(s) 176
BssECI CCNNGG 2 cut(s) 308, 339
BssMI GATC 2 cut(s) 153, 181
Bst4CI ACNGT 2 cut(s) 343, 350
Bst6I CTCTTC 1 cut(s) 129
BstAPI GCANNNNNTGC 1 cut(s) 272
BstAUI TGTACA 1 cut(s) 176
BstDEI CTNAG 2 cut(s) 147, 375
BstDSI CCRYGG 1 cut(s) 339
BstF5I GGATG 2 cut(s) 240, 244
BstKTI GATC 2 cut(s) 156, 184
BstMAI GTCTC 1 cut(s) 37
BstMBI GATC 2 cut(s) 153, 181
BstMWI GCNNNNNNNGC 2 cut(s) 272, 359
BstSCI CCNGG 2 cut(s) 307, 308
BstSLI GKGCMC 2 cut(s) 309, 315
BstV1I GCAGC 2 cut(s) 250, 477
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BsuRI GGCC 5 cut(s) 307, 313, 338, 390, 427
BtgI CCRYGG 1 cut(s) 339
BtsCI GGATG 2 cut(s) 240, 244
CaiI CAGNNNCTG 1 cut(s) 185
Cfr13I GGNCC 5 cut(s) 305, 306, 311, 312, 388
Cfr9I CCCGGG 1 cut(s) 308
Csp6I GTAC 1 cut(s) 177
CspCI CAANNNNNGTGG 2 cut(s) 131, 166
CviAII CATG 2 cut(s) 91, 170
CviQI GTAC 1 cut(s) 177
DdeI CTNAG 2 cut(s) 147, 375
DpnI GATC 2 cut(s) 155, 183
DpnII GATC 2 cut(s) 153, 181
DraIII CACNNNGTG 1 cut(s) 272
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
Eco24I GRGCYC 2 cut(s) 309, 315
Eco31I GGTCTC 1 cut(s) 37
Eco88I CYCGRG 1 cut(s) 308
EcoRI GAATTC 1 cut(s) 106
EcoT38I GRGCYC 2 cut(s) 309, 315
FaeI CATG 2 cut(s) 94, 173
FaiI YATR 3 cut(s) 92, 171, 281
FaqI GGGAC 2 cut(s) 72, 394
FatI CATG 2 cut(s) 90, 169
Fnu4HI GCNGC 2 cut(s) 264, 466
FokI GGATG 2 cut(s) 247, 251
FriOI GRGCYC 2 cut(s) 309, 315
Fsp4HI GCNGC 2 cut(s) 264, 466
FspBI CTAG 5 cut(s) 23, 77, 159, 213, 462
GluI GCNGC 2 cut(s) 264, 466
HaeIII GGCC 5 cut(s) 307, 313, 338, 390, 427
HapII CCGG 2 cut(s) 8, 309
Hin1II CATG 2 cut(s) 94, 173
HincII GTYRAC 1 cut(s) 288
HindII GTYRAC 1 cut(s) 288
HinfI GANTC 2 cut(s) 100, 139
HpaII CCGG 2 cut(s) 8, 309
Hpy166II GTNNAC 2 cut(s) 288, 346
Hpy188I TCNGA 2 cut(s) 105, 486
Hpy188III TCNNGA 2 cut(s) 185, 443
Hpy8I GTNNAC 2 cut(s) 288, 346
HpyAV CCTTC 3 cut(s) 328, 430, 504
HpyCH4III ACNGT 2 cut(s) 343, 350
HpyCH4IV ACGT 1 cut(s) 122
HpyCH4V TGCA 5 cut(s) 67, 115, 266, 353, 416
HpyF10VI GCNNNNNNNGC 2 cut(s) 272, 359
HpyF3I CTNAG 2 cut(s) 147, 375
HpySE526I ACGT 1 cut(s) 122
Hsp92II CATG 2 cut(s) 94, 173
Kzo9I GATC 2 cut(s) 153, 181
LmnI GCTCC 1 cut(s) 503
LpnPI CCDG 9 cut(s) 21, 159, 198, 288, 322, 368, 404, 417, 428
Lsp1109I GCAGC 2 cut(s) 250, 477
MaeI CTAG 5 cut(s) 23, 77, 159, 213, 462
MaeII ACGT 1 cut(s) 122
MalI GATC 2 cut(s) 155, 183
MboI GATC 2 cut(s) 153, 181
MboII GAAGA 2 cut(s) 146, 499
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 2 cut(s) 309, 315
MluCI AATT 5 cut(s) 106, 188, 256, 417, 447
MmeI TCCRAC 1 cut(s) 185
MnlI CCTC 3 cut(s) 7, 74, 276
MseI TTAA 1 cut(s) 191
MslI CAYNNNNRTG 1 cut(s) 95
MspI CCGG 2 cut(s) 8, 309
MspR9I CCNGG 2 cut(s) 309, 310
Mva1269I GAATGC 1 cut(s) 67
MwoI GCNNNNNNNGC 2 cut(s) 272, 359
NciI CCSGG 2 cut(s) 309, 310
NdeII GATC 2 cut(s) 153, 181
NlaIII CATG 2 cut(s) 94, 173
NlaIV GGNNCC 3 cut(s) 307, 313, 389
PctI GAATGC 1 cut(s) 67
PfeI GAWTC 2 cut(s) 100, 139
PkrI GCNGC 2 cut(s) 265, 467
PspN4I GGNNCC 3 cut(s) 307, 313, 389
PspOMI GGGCCC 2 cut(s) 305, 311
PspPI GGNCC 5 cut(s) 305, 306, 311, 312, 388
PstNI CAGNNNCTG 1 cut(s) 185
PsuI RGATCY 1 cut(s) 181
RsaI GTAC 1 cut(s) 178
RsaNI GTAC 1 cut(s) 177
RseI CAYNNNNRTG 1 cut(s) 95
SaqAI TTAA 1 cut(s) 191
SatI GCNGC 2 cut(s) 264, 466
Sau3AI GATC 2 cut(s) 153, 181
Sau96I GGNCC 5 cut(s) 305, 306, 311, 312, 388
ScrFI CCNGG 2 cut(s) 309, 310
SduI GDGCHC 2 cut(s) 309, 315
SetI ASST 9 cut(s) 18, 125, 148, 214, 265, 287, 441, 500, 515
SmaI CCCGGG 1 cut(s) 310
SmiMI CAYNNNNRTG 1 cut(s) 95
SrfI GCCCGGGC 1 cut(s) 310
Sse9I AATT 5 cut(s) 106, 188, 256, 417, 447
SspMI CTAG 5 cut(s) 23, 77, 159, 213, 462
StyD4I CCNGG 2 cut(s) 307, 308
TaaI ACNGT 2 cut(s) 343, 350
TaiI ACGT 1 cut(s) 125
TaqI TCGA 1 cut(s) 508
TaqII GACCGA 1 cut(s) 392
TasI AATT 5 cut(s) 106, 188, 256, 417, 447
TatI WGTACW 1 cut(s) 176
TfiI GAWTC 2 cut(s) 100, 139
Tru1I TTAA 1 cut(s) 191
Tru9I TTAA 1 cut(s) 191
TseI GCWGC 2 cut(s) 263, 465
TspDTI ATGAA 1 cut(s) 383
TspMI CCCGGG 1 cut(s) 308
XapI RAATTY 2 cut(s) 106, 447
XmaI CCCGGG 1 cut(s) 308
XspI CTAG 5 cut(s) 23, 77, 159, 213, 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.