Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0012684

Physical Location & Seq

Genomic Coordinates Reverse (-)

842209 .. 842857

Gene Structure 649 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010346

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGATCGTGCAGCCAGCGGCGACTTCATGCAACTCAGAGTCGTGCAGCTCCGGTGTGGCGGCTTGAAGTCGACTCCGATGCCTAGTCCGGGTCTGCAACGATTGCGACGACCGGAGTTCCGCCGAGGTCAAGGAGGAAGGCCAGGGGATTCATGGGGTTGTTATGAGCCTCATGTGATTGTGGACTTGTTTAAGGAAATGTGCATTGGTGGTTTTGAAGCTAGTGTAACCATTGTTTTGTATCTTTTATCAGCCATTGGTGAGTTGGGAAGTTACCTTGGAGGAGAGAGTGTTCCTGGCTACTGTATTAAGATGGGATTTTCCTATAATTTACATGTGGTCACTGCTTTGATTTATGTGTATGCAAAGAACGGGGAAATTGACTTGGCACGTTGGATTTTCGATGGAGTTGCTGTGAAGGATGTTGTTTTGTGGAATTGTTTGGTAGGCAAGTACGCAAAATGTGGCATGGTAGAAGAAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

162

Amino Acids

17.7

Weight (kDa)

7.57

Isoelectric Point (pI)

43.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012684)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0120821 RchiOBHm_Chr3g0468231 RchiOBHm_Chr3g0481101 RchiOBHm_Chr5g0015941 RchiOBHm_Chr5g0049911 RchiOBHm_Chr6g0272371 RchiOBHm_Chr6g0285951 RchiOBHm_Chr7g0229731 RchiOBHm_Chr7g0242881
rosa_laevigata	RLG00000010346 RLG00000025577
rosa_multiflora	Rmu_sc0000181.1_g000006 Rmu_sc0006492.1_g000024
rosa_roxburghii	Rroxscaffold_3G00275980 Rroxscaffold_5G00376450 Rroxscaffold_7G00178630
rosa_samantha	Rh5AG266800 Rh6CG292600 Rh6DG284700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	71
AciI	CCGC	3 cut(s)	18, 60, 121
AclWI	GGATC	1 cut(s)	12
AfaI	GTAC	1 cut(s)	455
AfiI	CCNNNNNNNGG	1 cut(s)	89
AflIII	ACRYGT	1 cut(s)	334
AgsI	TTSAA	2 cut(s)	67, 218
AjnI	CCWGG	2 cut(s)	142, 295
AjuI	GAANNNNNNNTTGG	2 cut(s)	189, 221
AloI	GAACNNNNNNTCC	2 cut(s)	276, 308
AluBI	AGCT	2 cut(s)	49, 221
AluI	AGCT	2 cut(s)	49, 221
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	140
ApeKI	GCWGC	2 cut(s)	11, 46
AsuC2I	CCSGG	1 cut(s)	90
AsuHPI	GGTGA	1 cut(s)	272
BbvI	GCAGC	2 cut(s)	23, 58
BccI	CCATC	2 cut(s)	307, 398
BcgI	CGANNNNNNTGC	4 cut(s)	61, 95, 392, 426
BciT130I	CCWGG	2 cut(s)	144, 297
BcnI	CCSGG	1 cut(s)	90
BfaI	CTAG	2 cut(s)	84, 222
BisI	GCNGC	4 cut(s)	12, 19, 47, 61
BlsI	GCNGC	4 cut(s)	13, 20, 48, 62
Bme1390I	CCNGG	3 cut(s)	90, 144, 297
BmrFI	CCNGG	3 cut(s)	90, 144, 297
BmsI	GCATC	1 cut(s)	69
BpuMI	CCSGG	1 cut(s)	90
BsaJI	CCNNGG	3 cut(s)	124, 143, 277
BsaWI	WCCGGW	2 cut(s)	51, 112
BsaXI	ACNNNNNCTCC	4 cut(s)	276, 306, 399, 429
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
BseBI	CCWGG	2 cut(s)	144, 297
BseDI	CCNNGG	3 cut(s)	124, 143, 277
BseGI	GGATG	1 cut(s)	427
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMII	CTCAG	1 cut(s)	49
BseRI	GAGGAG	1 cut(s)	297
BseXI	GCAGC	2 cut(s)	23, 58
BsgI	GTGCAG	2 cut(s)	30, 65
Bsh1285I	CGRYCG	1 cut(s)	113
BshFI	GGCC	1 cut(s)	142
BsiEI	CGRYCG	1 cut(s)	113
BsiSI	CCGG	3 cut(s)	52, 89, 113
BslI	CCNNNNNNNGG	1 cut(s)	89
BsnI	GGCC	1 cut(s)	142
Bsp143I	GATC	1 cut(s)	4
BspACI	CCGC	3 cut(s)	18, 60, 121
BspANI	GGCC	1 cut(s)	142
BspCNI	CTCAG	1 cut(s)	48
BspPI	GGATC	1 cut(s)	12
BssECI	CCNNGG	3 cut(s)	124, 143, 277
BssMI	GATC	1 cut(s)	4
BssT1I	CCWWGG	1 cut(s)	277
Bst2UI	CCWGG	2 cut(s)	144, 297
Bst4CI	ACNGT	1 cut(s)	305
BstAPI	GCANNNNNTGC	1 cut(s)	103
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	1 cut(s)	35
BstF5I	GGATG	1 cut(s)	427
BstKTI	GATC	1 cut(s)	7
BstMBI	GATC	1 cut(s)	4
BstMCI	CGRYCG	1 cut(s)	113
BstMWI	GCNNNNNNNGC	1 cut(s)	103
BstNI	CCWGG	2 cut(s)	144, 297
BstNSI	RCATGY	1 cut(s)	338
BstSCI	CCNGG	3 cut(s)	88, 142, 295
BstV1I	GCAGC	2 cut(s)	23, 58
BsuRI	GGCC	1 cut(s)	142
BtsCI	GGATG	1 cut(s)	427
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	454
CviAII	CATG	5 cut(s)	28, 153, 173, 335, 469
CviJI	RGCY	9 cut(s)	14, 49, 63, 142, 169, 221, 254, 300, 482
CviKI_1	RGCY	9 cut(s)	14, 49, 63, 142, 169, 221, 254, 300, 482
CviQI	GTAC	1 cut(s)	454
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
EciI	GGCGGA	1 cut(s)	110
Eco130I	CCWWGG	1 cut(s)	277
EcoRII	CCWGG	2 cut(s)	142, 295
EcoT14I	CCWWGG	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	5 cut(s)	31, 156, 176, 338, 472
FaiI	YATR	9 cut(s)	29, 154, 165, 174, 327, 336, 357, 363, 470
FatI	CATG	5 cut(s)	27, 152, 172, 334, 468
FblI	GTMKAC	1 cut(s)	71
Fnu4HI	GCNGC	4 cut(s)	12, 19, 47, 61
FokI	GGATG	1 cut(s)	434
Fsp4HI	GCNGC	4 cut(s)	12, 19, 47, 61
FspBI	CTAG	2 cut(s)	84, 222
GluI	GCNGC	4 cut(s)	12, 19, 47, 61
HaeIII	GGCC	1 cut(s)	142
HapII	CCGG	3 cut(s)	52, 89, 113
Hin1II	CATG	5 cut(s)	31, 156, 176, 338, 472
HincII	GTYRAC	1 cut(s)	72
HindII	GTYRAC	1 cut(s)	72
HinfI	GANTC	3 cut(s)	39, 73, 149
HpaII	CCGG	3 cut(s)	52, 89, 113
HphI	GGTGA	1 cut(s)	272
Hpy166II	GTNNAC	2 cut(s)	72, 184
Hpy188I	TCNGA	2 cut(s)	38, 78
Hpy8I	GTNNAC	2 cut(s)	72, 184
Hpy99I	CGWCG	1 cut(s)	111
HpyAV	CCTTC	2 cut(s)	132, 412
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4IV	ACGT	1 cut(s)	391
HpyCH4V	TGCA	6 cut(s)	11, 31, 46, 97, 204, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	103
HpyF3I	CTNAG	1 cut(s)	35
HpySE526I	ACGT	1 cut(s)	391
Hsp92II	CATG	5 cut(s)	31, 156, 176, 338, 472
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	1 cut(s)	54
LpnPI	CCDG	8 cut(s)	28, 65, 102, 126, 129, 156, 282, 309
Lsp1109I	GCAGC	2 cut(s)	23, 58
LweI	GCATC	1 cut(s)	69
MaeI	CTAG	2 cut(s)	84, 222
MaeII	ACGT	1 cut(s)	391
MaeIII	GTNAC	3 cut(s)	226, 272, 340
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MluCI	AATT	3 cut(s)	328, 378, 436
MlyI	GAGTC	2 cut(s)	48, 67
MmeI	TCCRAC	1 cut(s)	374
MnlI	CCTC	4 cut(s)	119, 128, 180, 275
MseI	TTAA	2 cut(s)	192, 309
MspA1I	CMGCKG	1 cut(s)	18
MspI	CCGG	3 cut(s)	52, 89, 113
MspR9I	CCNGG	3 cut(s)	90, 144, 297
MvaI	CCWGG	2 cut(s)	144, 297
MwoI	GCNNNNNNNGC	1 cut(s)	103
NciI	CCSGG	1 cut(s)	90
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	5 cut(s)	31, 156, 176, 338, 472
NmeAIII	GCCGAG	1 cut(s)	149
NmuCI	GTSAC	1 cut(s)	340
NspI	RCATGY	1 cut(s)	338
PciI	ACATGT	1 cut(s)	334
PcsI	WCGNNNNNNNCGW	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	149
PkrI	GCNGC	4 cut(s)	13, 20, 48, 62
PleI	GAGTC	2 cut(s)	47, 67
PpsI	GAGTC	2 cut(s)	47, 67
PscI	ACATGT	1 cut(s)	334
Psp6I	CCWGG	2 cut(s)	142, 295
PspGI	CCWGG	2 cut(s)	142, 295
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
SalI	GTCGAC	1 cut(s)	70
SaqAI	TTAA	2 cut(s)	192, 309
SatI	GCNGC	4 cut(s)	12, 19, 47, 61
Sau3AI	GATC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	48, 67
ScrFI	CCNGG	3 cut(s)	90, 144, 297
SetI	ASST	5 cut(s)	51, 130, 223, 279, 394
SfaNI	GCATC	1 cut(s)	69
Sse9I	AATT	3 cut(s)	328, 378, 436
SsiI	CCGC	3 cut(s)	18, 60, 121
SspMI	CTAG	2 cut(s)	84, 222
StyD4I	CCNGG	3 cut(s)	88, 142, 295
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	1 cut(s)	305
TaiI	ACGT	1 cut(s)	394
TaqI	TCGA	2 cut(s)	71, 402
TasI	AATT	3 cut(s)	328, 378, 436
TauI	GCSGC	2 cut(s)	21, 63
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	2 cut(s)	192, 309
Tru9I	TTAA	2 cut(s)	192, 309
TscAI	CASTG	1 cut(s)	349
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	2 cut(s)	11, 46
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	2 cut(s)	16, 141
TspRI	CASTG	1 cut(s)	349
XceI	RCATGY	1 cut(s)	338
XcmI	CCANNNNNNNNNTGG	2 cut(s)	150, 262
XmiI	GTMKAC	1 cut(s)	71
XspI	CTAG	2 cut(s)	84, 222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.