Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006492.1

Orthogroup ID

OG0012684

Physical Location & Seq

Genomic Coordinates Forward (+)

137976 .. 138530

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006492.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

atggcctgcacgtcgttggcgccggcagtcgatggtaattcgtttgcagcccagaagccggcgatcctctctctctatctccgtgaagccagcgacgacttcatccaactcagagttgtgcagcaccggtgtggcggcttgaagtcgactccggtgcagagtccgggtctgcaacgattgcgacgaccggagttcctccgaggtcgaggaggaaggccaggggattcatggggttatactttgatgggtgattaccttcatgtttcgcagcctcgtgtgattgtggacttgtttaaggaaatgtgcattggtggttttgaagctagtgtaaccactgttctgtatcttttatcggccattggtgagttgggaagttaccttggaggagagagtgttcatggctactgcattaagatgggattttcctataatagatgtctattggggggcaatagatgtctattggagggcaatagacgtttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

161

Amino Acids

17.65

Weight (kDa)

9.0

Isoelectric Point (pI)

44.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012684)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0120821 RchiOBHm_Chr3g0468231 RchiOBHm_Chr3g0481101 RchiOBHm_Chr5g0015941 RchiOBHm_Chr5g0049911 RchiOBHm_Chr6g0272371 RchiOBHm_Chr6g0285951 RchiOBHm_Chr7g0229731 RchiOBHm_Chr7g0242881
rosa_laevigata	RLG00000010346 RLG00000025577
rosa_multiflora	Rmu_sc0000181.1_g000006 Rmu_sc0006492.1_g000024
rosa_roxburghii	Rroxscaffold_3G00275980 Rroxscaffold_5G00376450 Rroxscaffold_7G00178630
rosa_samantha	Rh5AG266800 Rh6CG292600 Rh6DG284700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	19
AccI	GTMKAC	1 cut(s)	146
AciI	CCGC	1 cut(s)	135
AclWI	GGATC	1 cut(s)	58
AcoI	YGGCCR	1 cut(s)	354
AcyI	GRCGYC	1 cut(s)	20
AfiI	CCNNNNNNNGG	1 cut(s)	58
AgeI	ACCGGT	1 cut(s)	126
AgsI	TTSAA	2 cut(s)	142, 320
AjiI	CACGTC	1 cut(s)	12
AjnI	CCWGG	1 cut(s)	217
AjuI	GAANNNNNNNTTGG	2 cut(s)	291, 323
AleI	CACNNNNGTG	1 cut(s)	129
AloI	GAACNNNNNNTCC	2 cut(s)	378, 410
AluBI	AGCT	1 cut(s)	323
AluI	AGCT	1 cut(s)	323
AlwI	GGATC	1 cut(s)	58
AoxI	GGCC	3 cut(s)	3, 215, 354
ApeKI	GCWGC	3 cut(s)	47, 121, 268
AsiGI	ACCGGT	1 cut(s)	126
AspLEI	GCGC	1 cut(s)	22
AsuC2I	CCSGG	1 cut(s)	165
AsuHPI	GGTGA	2 cut(s)	260, 374
BanI	GGYRCC	1 cut(s)	19
BauI	CACGAG	1 cut(s)	273
BbvI	GCAGC	3 cut(s)	59, 133, 280
BccI	CCATC	3 cut(s)	26, 238, 409
BcgI	CGANNNNNNTGC	2 cut(s)	136, 170
BciT130I	CCWGG	1 cut(s)	219
BcnI	CCSGG	1 cut(s)	165
BfaI	CTAG	1 cut(s)	324
BfoI	RGCGCY	1 cut(s)	23
BisI	GCNGC	4 cut(s)	48, 122, 136, 269
BlsI	GCNGC	4 cut(s)	49, 123, 137, 270
Bme1390I	CCNGG	2 cut(s)	165, 219
BmgBI	CACGTC	1 cut(s)	12
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	2 cut(s)	165, 219
BpuMI	CCSGG	1 cut(s)	165
BsaHI	GRCGYC	1 cut(s)	20
BsaJI	CCNNGG	3 cut(s)	199, 218, 379
BsaWI	WCCGGW	3 cut(s)	126, 151, 187
BsaXI	ACNNNNNCTCC	2 cut(s)	378, 408
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse118I	RCCGGY	3 cut(s)	22, 58, 126
BseBI	CCWGG	1 cut(s)	219
BseDI	CCNNGG	3 cut(s)	199, 218, 379
BseGI	GGATG	1 cut(s)	102
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMII	CTCAG	1 cut(s)	124
BseRI	GAGGAG	2 cut(s)	222, 399
BseXI	GCAGC	3 cut(s)	59, 133, 280
BsgI	GTGCAG	2 cut(s)	140, 176
Bsh1285I	CGRYCG	1 cut(s)	188
BshFI	GGCC	3 cut(s)	5, 217, 356
BshNI	GGYRCC	1 cut(s)	19
BshTI	ACCGGT	1 cut(s)	126
BsiEI	CGRYCG	1 cut(s)	188
BsiSI	CCGG	6 cut(s)	23, 59, 127, 152, 164, 188
BslI	CCNNNNNNNGG	1 cut(s)	58
BsnI	GGCC	3 cut(s)	5, 217, 356
Bsp143I	GATC	1 cut(s)	63
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	3 cut(s)	5, 217, 356
BspCNI	CTCAG	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	21
BspPI	GGATC	1 cut(s)	58
BspT107I	GGYRCC	1 cut(s)	19
BsrFI	RCCGGY	3 cut(s)	22, 58, 126
BssAI	RCCGGY	3 cut(s)	22, 58, 126
BssECI	CCNNGG	3 cut(s)	199, 218, 379
BssMI	GATC	1 cut(s)	63
BssNI	GRCGYC	1 cut(s)	20
BssSI	CACGAG	1 cut(s)	273
BssT1I	CCWWGG	1 cut(s)	379
Bst2BI	CACGAG	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	219
Bst4CI	ACNGT	1 cut(s)	337
BstACI	GRCGYC	1 cut(s)	20
BstAPI	GCANNNNNTGC	1 cut(s)	178
BstC8I	GCNNGC	4 cut(s)	7, 24, 60, 91
BstDEI	CTNAG	1 cut(s)	110
BstF5I	GGATG	1 cut(s)	102
BstH2I	RGCGCY	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	22
BstKTI	GATC	1 cut(s)	66
BstMBI	GATC	1 cut(s)	63
BstMCI	CGRYCG	1 cut(s)	188
BstMWI	GCNNNNNNNGC	1 cut(s)	178
BstNI	CCWGG	1 cut(s)	219
BstSCI	CCNGG	2 cut(s)	163, 217
BstV1I	GCAGC	3 cut(s)	59, 133, 280
BsuRI	GGCC	3 cut(s)	5, 217, 356
BtrI	CACGTC	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	333
Cac8I	GCNNGC	4 cut(s)	7, 24, 60, 91
CfoI	GCGC	1 cut(s)	22
Cfr10I	RCCGGY	3 cut(s)	22, 58, 126
CspAI	ACCGGT	1 cut(s)	126
CviAII	CATG	3 cut(s)	228, 260, 398
DdeI	CTNAG	1 cut(s)	110
DinI	GGCGCC	1 cut(s)	21
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
EaeI	YGGCCR	1 cut(s)	354
Eco130I	CCWWGG	1 cut(s)	379
EcoRII	CCWGG	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	379
EgeI	GGCGCC	1 cut(s)	21
EheI	GGCGCC	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	379
FaeI	CATG	3 cut(s)	231, 263, 401
FaiI	YATR	5 cut(s)	229, 237, 261, 399, 429
FatI	CATG	3 cut(s)	227, 259, 397
FblI	GTMKAC	1 cut(s)	146
Fnu4HI	GCNGC	4 cut(s)	48, 122, 136, 269
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	4 cut(s)	48, 122, 136, 269
FspBI	CTAG	1 cut(s)	324
GlaI	GCGC	1 cut(s)	21
GluI	GCNGC	4 cut(s)	48, 122, 136, 269
HaeII	RGCGCY	1 cut(s)	23
HaeIII	GGCC	3 cut(s)	5, 217, 356
HapII	CCGG	6 cut(s)	23, 59, 127, 152, 164, 188
HhaI	GCGC	1 cut(s)	22
Hin1I	GRCGYC	1 cut(s)	20
Hin1II	CATG	3 cut(s)	231, 263, 401
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HincII	GTYRAC	1 cut(s)	147
HindII	GTYRAC	1 cut(s)	147
HinfI	GANTC	3 cut(s)	148, 160, 224
HpaII	CCGG	6 cut(s)	23, 59, 127, 152, 164, 188
HphI	GGTGA	2 cut(s)	260, 374
Hpy166II	GTNNAC	2 cut(s)	147, 286
Hpy188I	TCNGA	2 cut(s)	113, 200
Hpy8I	GTNNAC	2 cut(s)	147, 286
Hpy99I	CGWCG	3 cut(s)	16, 98, 186
HpyAV	CCTTC	2 cut(s)	207, 266
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4IV	ACGT	2 cut(s)	11, 478
HpyCH4V	TGCA	7 cut(s)	9, 47, 121, 157, 172, 306, 408
HpyF10VI	GCNNNNNNNGC	1 cut(s)	178
HpyF3I	CTNAG	1 cut(s)	110
HpySE526I	ACGT	2 cut(s)	11, 478
Hsp92I	GRCGYC	1 cut(s)	20
Hsp92II	CATG	3 cut(s)	231, 263, 401
HspAI	GCGC	1 cut(s)	20
KasI	GGCGCC	1 cut(s)	19
KroI	GCCGGC	2 cut(s)	22, 58
KroNI	GCCGGC	2 cut(s)	24, 60
Kzo9I	GATC	1 cut(s)	63
Lsp1109I	GCAGC	3 cut(s)	59, 133, 280
MaeI	CTAG	1 cut(s)	324
MaeII	ACGT	2 cut(s)	11, 478
MaeIII	GTNAC	2 cut(s)	328, 374
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MluCI	AATT	1 cut(s)	37
Mly113I	GGCGCC	1 cut(s)	20
MlyI	GAGTC	2 cut(s)	142, 169
MmeI	TCCRAC	1 cut(s)	130
MnlI	CCTC	8 cut(s)	77, 194, 200, 203, 206, 282, 377, 460
MroNI	GCCGGC	2 cut(s)	22, 58
MseI	TTAA	3 cut(s)	294, 411, 484
MslI	CAYNNNNRTG	2 cut(s)	129, 413
MspI	CCGG	6 cut(s)	23, 59, 127, 152, 164, 188
MspR9I	CCNGG	2 cut(s)	165, 219
MvaI	CCWGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	1 cut(s)	178
NaeI	GCCGGC	2 cut(s)	24, 60
NarI	GGCGCC	1 cut(s)	20
NciI	CCSGG	1 cut(s)	165
NdeII	GATC	1 cut(s)	63
NgoMIV	GCCGGC	2 cut(s)	22, 58
NlaIII	CATG	3 cut(s)	231, 263, 401
NlaIV	GGNNCC	1 cut(s)	21
OliI	CACNNNNGTG	1 cut(s)	129
PcsI	WCGNNNNNNNCGW	1 cut(s)	181
PdiI	GCCGGC	2 cut(s)	24, 60
PfeI	GAWTC	1 cut(s)	224
PinAI	ACCGGT	1 cut(s)	126
PkrI	GCNGC	4 cut(s)	49, 123, 137, 270
PleI	GAGTC	2 cut(s)	142, 168
PluTI	GGCGCC	1 cut(s)	23
PpsI	GAGTC	2 cut(s)	142, 168
Psp6I	CCWGG	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	1 cut(s)	21
PsrI	GAACNNNNNNTAC	2 cut(s)	321, 353
RseI	CAYNNNNRTG	2 cut(s)	129, 413
SalI	GTCGAC	1 cut(s)	145
SaqAI	TTAA	3 cut(s)	294, 411, 484
SatI	GCNGC	4 cut(s)	48, 122, 136, 269
Sau3AI	GATC	1 cut(s)	63
SchI	GAGTC	2 cut(s)	142, 169
ScrFI	CCNGG	2 cut(s)	165, 219
SetI	ASST	6 cut(s)	14, 205, 258, 325, 381, 481
SfoI	GGCGCC	1 cut(s)	21
SgrAI	CRCCGGYG	1 cut(s)	126
SmiMI	CAYNNNNRTG	2 cut(s)	129, 413
Sse9I	AATT	1 cut(s)	37
SsiI	CCGC	1 cut(s)	135
SspDI	GGCGCC	1 cut(s)	19
SspMI	CTAG	1 cut(s)	324
StyD4I	CCNGG	2 cut(s)	163, 217
StyI	CCWWGG	1 cut(s)	379
TaaI	ACNGT	1 cut(s)	337
TaiI	ACGT	2 cut(s)	14, 481
TaqI	TCGA	3 cut(s)	30, 146, 205
TasI	AATT	1 cut(s)	37
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	1 cut(s)	224
Tru1I	TTAA	3 cut(s)	294, 411, 484
Tru9I	TTAA	3 cut(s)	294, 411, 484
TscAI	CASTG	1 cut(s)	340
TseI	GCWGC	3 cut(s)	47, 121, 268
TspDTI	ATGAA	4 cut(s)	91, 216, 248, 386
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	1 cut(s)	340
XcmI	CCANNNNNNNNNTGG	2 cut(s)	225, 364
XmiI	GTMKAC	1 cut(s)	146
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.