Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0012684

Physical Location & Seq

Genomic Coordinates Reverse (-)

67293813 .. 67294254

Gene Structure 442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00275980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGAGGTGGCGCCACGGATCGTGCAGCCAGCGGCGACTTCATGCAACTCGAGTTGTGCAGCTCCGGTGTGGCGGCTTGAAGTCGACTCCGGTGTCGGGTCCGGGTCTGCAACGATTGAGACGACCGGAGTTCCACCGAGGTCGAGGAGGAAGGCCAGGGGATTCATGGGGTGGTTATGAGGATGCCCACCACTTGTTTGATGAATTTCCTCAGAGAAATGATTTGATTTCATGGAATACTTTGATGGGTGATTACCTTCATGTTTCGCAGCCTCGTGTGATTGTGGACTTGTTTAAGGAAATGTGCATTGGTGGTTTTGAAGCTAGTGTAACCACTGTTCTGTATCTTTTATCAGCCATTGGTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

122

Amino Acids

13.83

Weight (kDa)

9.35

Isoelectric Point (pI)

46.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012684)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0120821 RchiOBHm_Chr3g0468231 RchiOBHm_Chr3g0481101 RchiOBHm_Chr5g0015941 RchiOBHm_Chr5g0049911 RchiOBHm_Chr6g0272371 RchiOBHm_Chr6g0285951 RchiOBHm_Chr7g0229731 RchiOBHm_Chr7g0242881
rosa_laevigata	RLG00000010346 RLG00000025577
rosa_multiflora	Rmu_sc0000181.1_g000006 Rmu_sc0006492.1_g000024
rosa_roxburghii	Rroxscaffold_3G00275980 Rroxscaffold_5G00376450 Rroxscaffold_7G00178630
rosa_samantha	Rh5AG266800 Rh6CG292600 Rh6DG284700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	91
AccB1I	GGYRCC	1 cut(s)	9
AccI	GTMKAC	1 cut(s)	83
AciI	CCGC	2 cut(s)	31, 72
AclWI	GGATC	1 cut(s)	25
AcsI	RAATTY	1 cut(s)	203
AcyI	GRCGYC	1 cut(s)	10
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgsI	TTSAA	2 cut(s)	79, 320
AjnI	CCWGG	1 cut(s)	154
AjuI	GAANNNNNNNTTGG	2 cut(s)	291, 323
AluBI	AGCT	2 cut(s)	61, 323
AluI	AGCT	2 cut(s)	61, 323
Alw26I	GTCTC	1 cut(s)	112
AlwI	GGATC	1 cut(s)	25
Ama87I	CYCGRG	1 cut(s)	48
AoxI	GGCC	1 cut(s)	152
ApeKI	GCWGC	3 cut(s)	24, 58, 268
ApoI	RAATTY	1 cut(s)	203
AspLEI	GCGC	1 cut(s)	12
AspS9I	GGNCC	1 cut(s)	98
AsuC2I	CCSGG	1 cut(s)	102
AsuHPI	GGTGA	1 cut(s)	260
AvaI	CYCGRG	1 cut(s)	48
AvaII	GGWCC	1 cut(s)	98
BanI	GGYRCC	1 cut(s)	9
BauI	CACGAG	1 cut(s)	273
BbvI	GCAGC	3 cut(s)	36, 70, 280
BccI	CCATC	1 cut(s)	238
BciT130I	CCWGG	1 cut(s)	156
BcnI	CCSGG	1 cut(s)	102
BcoDI	GTCTC	1 cut(s)	112
BfaI	CTAG	1 cut(s)	324
BfoI	RGCGCY	1 cut(s)	13
BisI	GCNGC	5 cut(s)	25, 32, 59, 73, 269
BlsI	GCNGC	5 cut(s)	26, 33, 60, 74, 270
Bme1390I	CCNGG	2 cut(s)	102, 156
Bme18I	GGWCC	1 cut(s)	98
BmeT110I	CYCGRG	1 cut(s)	48
BmgT120I	GGNCC	1 cut(s)	98
BmiI	GGNNCC	2 cut(s)	11, 99
BmrFI	CCNGG	2 cut(s)	102, 156
BmsI	GCATC	1 cut(s)	172
BpuMI	CCSGG	1 cut(s)	102
BsaHI	GRCGYC	1 cut(s)	10
BsaJI	CCNNGG	3 cut(s)	13, 136, 155
BsaWI	WCCGGW	3 cut(s)	63, 88, 124
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	156
BseDI	CCNNGG	3 cut(s)	13, 136, 155
BseGI	GGATG	1 cut(s)	187
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMII	CTCAG	1 cut(s)	224
BseRI	GAGGAG	1 cut(s)	159
BseXI	GCAGC	3 cut(s)	36, 70, 280
BsgI	GTGCAG	2 cut(s)	43, 77
Bsh1285I	CGRYCG	1 cut(s)	125
BshFI	GGCC	1 cut(s)	154
BshNI	GGYRCC	1 cut(s)	9
BsiEI	CGRYCG	1 cut(s)	125
BsiHKCI	CYCGRG	1 cut(s)	48
BsiSI	CCGG	4 cut(s)	64, 89, 101, 125
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	112
BsmBI	CGTCTC	1 cut(s)	112
BsnI	GGCC	1 cut(s)	154
BsoBI	CYCGRG	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	17
BspACI	CCGC	2 cut(s)	31, 72
BspANI	GGCC	1 cut(s)	154
BspCNI	CTCAG	1 cut(s)	223
BspLI	GGNNCC	2 cut(s)	11, 99
BspPI	GGATC	1 cut(s)	25
BspT107I	GGYRCC	1 cut(s)	9
BssECI	CCNNGG	3 cut(s)	13, 136, 155
BssMI	GATC	1 cut(s)	17
BssNI	GRCGYC	1 cut(s)	10
BssSI	CACGAG	1 cut(s)	273
Bst2BI	CACGAG	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	156
Bst4CI	ACNGT	1 cut(s)	337
BstACI	GRCGYC	1 cut(s)	10
BstC8I	GCNNGC	1 cut(s)	29
BstDEI	CTNAG	1 cut(s)	210
BstDSI	CCRYGG	1 cut(s)	13
BstF5I	GGATG	1 cut(s)	187
BstH2I	RGCGCY	1 cut(s)	13
BstHHI	GCGC	1 cut(s)	12
BstKTI	GATC	1 cut(s)	20
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	1 cut(s)	17
BstMCI	CGRYCG	1 cut(s)	125
BstNI	CCWGG	1 cut(s)	156
BstSCI	CCNGG	2 cut(s)	100, 154
BstV1I	GCAGC	3 cut(s)	36, 70, 280
BsuRI	GGCC	1 cut(s)	154
BtgI	CCRYGG	1 cut(s)	13
BtsCI	GGATG	1 cut(s)	187
BtsIMutI	CAGTG	1 cut(s)	333
Cac8I	GCNNGC	1 cut(s)	29
CfoI	GCGC	1 cut(s)	12
Cfr13I	GGNCC	1 cut(s)	98
CviAII	CATG	4 cut(s)	41, 165, 231, 260
CviJI	RGCY	7 cut(s)	27, 61, 75, 154, 271, 323, 356
CviKI_1	RGCY	7 cut(s)	27, 61, 75, 154, 271, 323, 356
DdeI	CTNAG	1 cut(s)	210
DinI	GGCGCC	1 cut(s)	11
DpnI	GATC	1 cut(s)	19
DpnII	GATC	1 cut(s)	17
DrdI	GACNNNNNNGTC	1 cut(s)	91
DseDI	GACNNNNNNGTC	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	98
Eco88I	CYCGRG	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	154
EgeI	GGCGCC	1 cut(s)	11
EheI	GGCGCC	1 cut(s)	11
Esp3I	CGTCTC	1 cut(s)	112
FaeI	CATG	4 cut(s)	44, 168, 234, 263
FaiI	YATR	5 cut(s)	42, 166, 177, 232, 261
FatI	CATG	4 cut(s)	40, 164, 230, 259
FblI	GTMKAC	1 cut(s)	83
Fnu4HI	GCNGC	5 cut(s)	25, 32, 59, 73, 269
FokI	GGATG	1 cut(s)	194
Fsp4HI	GCNGC	5 cut(s)	25, 32, 59, 73, 269
FspBI	CTAG	1 cut(s)	324
GlaI	GCGC	1 cut(s)	11
GluI	GCNGC	5 cut(s)	25, 32, 59, 73, 269
HaeII	RGCGCY	1 cut(s)	13
HaeIII	GGCC	1 cut(s)	154
HapII	CCGG	4 cut(s)	64, 89, 101, 125
HhaI	GCGC	1 cut(s)	12
Hin1I	GRCGYC	1 cut(s)	10
Hin1II	CATG	4 cut(s)	44, 168, 234, 263
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HincII	GTYRAC	1 cut(s)	84
HindII	GTYRAC	1 cut(s)	84
HinfI	GANTC	2 cut(s)	85, 161
HpaII	CCGG	4 cut(s)	64, 89, 101, 125
HphI	GGTGA	1 cut(s)	260
Hpy166II	GTNNAC	2 cut(s)	84, 286
Hpy188I	TCNGA	1 cut(s)	213
Hpy8I	GTNNAC	2 cut(s)	84, 286
HpyAV	CCTTC	2 cut(s)	144, 266
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4V	TGCA	5 cut(s)	24, 44, 58, 109, 306
HpyF3I	CTNAG	1 cut(s)	210
Hsp92I	GRCGYC	1 cut(s)	10
Hsp92II	CATG	4 cut(s)	44, 168, 234, 263
HspAI	GCGC	1 cut(s)	10
KasI	GGCGCC	1 cut(s)	9
Kzo9I	GATC	1 cut(s)	17
LmnI	GCTCC	1 cut(s)	66
LpnPI	CCDG	7 cut(s)	41, 77, 102, 114, 138, 141, 168
Lsp1109I	GCAGC	3 cut(s)	36, 70, 280
LweI	GCATC	1 cut(s)	172
MaeI	CTAG	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	328
MalI	GATC	1 cut(s)	19
MboI	GATC	1 cut(s)	17
MluCI	AATT	1 cut(s)	203
Mly113I	GGCGCC	1 cut(s)	10
MlyI	GAGTC	1 cut(s)	79
MnlI	CCTC	6 cut(s)	131, 137, 140, 172, 219, 282
MseI	TTAA	1 cut(s)	294
MspA1I	CMGCKG	1 cut(s)	31
MspI	CCGG	4 cut(s)	64, 89, 101, 125
MspR9I	CCNGG	2 cut(s)	102, 156
MvaI	CCWGG	1 cut(s)	156
NarI	GGCGCC	1 cut(s)	10
NciI	CCSGG	1 cut(s)	102
NdeII	GATC	1 cut(s)	17
NlaIII	CATG	4 cut(s)	44, 168, 234, 263
NlaIV	GGNNCC	2 cut(s)	11, 99
PaeR7I	CTCGAG	1 cut(s)	48
PcsI	WCGNNNNNNNCGW	1 cut(s)	118
PfeI	GAWTC	1 cut(s)	161
PkrI	GCNGC	5 cut(s)	26, 33, 60, 74, 270
PleI	GAGTC	1 cut(s)	79
PluTI	GGCGCC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PspN4I	GGNNCC	2 cut(s)	11, 99
PspPI	GGNCC	1 cut(s)	98
PspXI	VCTCGAGB	1 cut(s)	48
PsrI	GAACNNNNNNTAC	2 cut(s)	321, 353
SalI	GTCGAC	1 cut(s)	82
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	5 cut(s)	25, 32, 59, 73, 269
Sau3AI	GATC	1 cut(s)	17
Sau96I	GGNCC	1 cut(s)	98
SchI	GAGTC	1 cut(s)	79
ScrFI	CCNGG	2 cut(s)	102, 156
SetI	ASST	5 cut(s)	8, 63, 142, 258, 325
SfaNI	GCATC	1 cut(s)	172
SfoI	GGCGCC	1 cut(s)	11
Sfr274I	CTCGAG	1 cut(s)	48
SinI	GGWCC	1 cut(s)	98
SlaI	CTCGAG	1 cut(s)	48
SmlI	CTYRAG	1 cut(s)	48
SmoI	CTYRAG	1 cut(s)	48
Sse9I	AATT	1 cut(s)	203
SsiI	CCGC	2 cut(s)	31, 72
SspDI	GGCGCC	1 cut(s)	9
SspMI	CTAG	1 cut(s)	324
StyD4I	CCNGG	2 cut(s)	100, 154
TaaI	ACNGT	1 cut(s)	337
TaqI	TCGA	3 cut(s)	49, 83, 142
TasI	AATT	1 cut(s)	203
TauI	GCSGC	2 cut(s)	34, 75
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	1 cut(s)	340
TseI	GCWGC	3 cut(s)	24, 58, 268
TspDTI	ATGAA	5 cut(s)	29, 153, 216, 219, 248
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	1 cut(s)	340
VpaK11BI	GGWCC	1 cut(s)	98
XapI	RAATTY	1 cut(s)	203
XcmI	CCANNNNNNNNNTGG	1 cut(s)	162
XhoI	CTCGAG	1 cut(s)	48
XmiI	GTMKAC	1 cut(s)	83
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.