Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0012684

Physical Location & Seq

Genomic Coordinates Reverse (-)

18273321 .. 18274061

Gene Structure 741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00178630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGCCCGCACGTCGTCGGCGCGGCGGTCGATGGTAGTCGTTTGCAGCCCGTGCGGCGATCGTCACGAGGCGGCGCCACGGATCGTGCAACCGGCGGCGACTTCATGCAACTCGAGTCGTGCGGCTCCGGTGTGGCGGCTTGAAGTCGACTCCGGTGTCGTGTTCGGGTCCGCAACGATTGCTACGACCGGAGTTCCACCGAGGTCAAGGAGGAAGGCCGGGGATTCATGGGGTTGTTATGAGGTCCGGGCATGGCGGATTTATCACCAACGGGAAATTGACTTGGCACGTTGGATTTTCGATGGAGTTGCTGTGAAGGATGTTGTTTTGTGGAATTGTTTGGTAGGCAAGTATGCAAAATGTGGCATGGTAGAAGAAGCAGTAGCTTTGCTACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

132

Amino Acids

14.52

Weight (kDa)

9.45

Isoelectric Point (pI)

62.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012684)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0120821 RchiOBHm_Chr3g0468231 RchiOBHm_Chr3g0481101 RchiOBHm_Chr5g0015941 RchiOBHm_Chr5g0049911 RchiOBHm_Chr6g0272371 RchiOBHm_Chr6g0285951 RchiOBHm_Chr7g0229731 RchiOBHm_Chr7g0242881
rosa_laevigata	RLG00000010346 RLG00000025577
rosa_multiflora	Rmu_sc0000181.1_g000006 Rmu_sc0006492.1_g000024
rosa_roxburghii	Rroxscaffold_3G00275980 Rroxscaffold_5G00376450 Rroxscaffold_7G00178630
rosa_samantha	Rh5AG266800 Rh6CG292600 Rh6DG284700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	155
AccB1I	GGYRCC	1 cut(s)	73
AccI	GTMKAC	1 cut(s)	147
AccII	CGCG	1 cut(s)	22
AclWI	GGATC	1 cut(s)	89
AcyI	GRCGYC	1 cut(s)	74
AgsI	TTSAA	1 cut(s)	143
AjiI	CACGTC	1 cut(s)	12
AluBI	AGCT	1 cut(s)	386
AluI	AGCT	1 cut(s)	386
AlwI	GGATC	1 cut(s)	89
Ama87I	CYCGRG	1 cut(s)	112
AoxI	GGCC	2 cut(s)	3, 216
ApeKI	GCWGC	1 cut(s)	45
AspLEI	GCGC	2 cut(s)	22, 76
AspS9I	GGNCC	3 cut(s)	4, 168, 244
AsuC2I	CCSGG	2 cut(s)	220, 248
AsuHPI	GGTGA	1 cut(s)	257
AvaI	CYCGRG	1 cut(s)	112
AvaII	GGWCC	2 cut(s)	168, 244
BanI	GGYRCC	1 cut(s)	73
BauI	CACGAG	1 cut(s)	65
BbvI	GCAGC	1 cut(s)	57
BccI	CCATC	2 cut(s)	25, 296
BcgI	CGANNNNNNTGC	2 cut(s)	290, 324
BcnI	CCSGG	2 cut(s)	220, 248
BfoI	RGCGCY	1 cut(s)	77
BglI	GCCNNNNNGGC	1 cut(s)	54
BisI	GCNGC	7 cut(s)	23, 46, 55, 72, 96, 123, 137
BlsI	GCNGC	7 cut(s)	24, 47, 56, 73, 97, 124, 138
Bme1390I	CCNGG	2 cut(s)	220, 248
Bme18I	GGWCC	2 cut(s)	168, 244
BmeT110I	CYCGRG	1 cut(s)	112
BmgBI	CACGTC	1 cut(s)	12
BmgT120I	GGNCC	3 cut(s)	4, 168, 244
BmiI	GGNNCC	3 cut(s)	75, 126, 169
BmrFI	CCNGG	2 cut(s)	220, 248
BpuMI	CCSGG	2 cut(s)	220, 248
BsaHI	GRCGYC	1 cut(s)	74
BsaJI	CCNNGG	3 cut(s)	77, 200, 219
BsaWI	WCCGGW	3 cut(s)	127, 152, 188
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bse118I	RCCGGY	1 cut(s)	91
BseDI	CCNNGG	3 cut(s)	77, 200, 219
BseGI	GGATG	1 cut(s)	325
BseXI	GCAGC	1 cut(s)	57
Bsh1236I	CGCG	1 cut(s)	22
Bsh1285I	CGRYCG	3 cut(s)	29, 61, 189
BshFI	GGCC	2 cut(s)	5, 218
BshNI	GGYRCC	1 cut(s)	73
BsiEI	CGRYCG	3 cut(s)	29, 61, 189
BsiHKCI	CYCGRG	1 cut(s)	112
BsiSI	CCGG	6 cut(s)	92, 128, 153, 189, 219, 247
BsnI	GGCC	2 cut(s)	5, 218
BsoBI	CYCGRG	1 cut(s)	112
Bsp143I	GATC	2 cut(s)	58, 81
BspANI	GGCC	2 cut(s)	5, 218
BspFNI	CGCG	1 cut(s)	22
BspLI	GGNNCC	3 cut(s)	75, 126, 169
BspPI	GGATC	1 cut(s)	89
BspT107I	GGYRCC	1 cut(s)	73
BsrFI	RCCGGY	1 cut(s)	91
BssAI	RCCGGY	1 cut(s)	91
BssECI	CCNNGG	3 cut(s)	77, 200, 219
BssMI	GATC	2 cut(s)	58, 81
BssNI	GRCGYC	1 cut(s)	74
BssSI	CACGAG	1 cut(s)	65
Bst2BI	CACGAG	1 cut(s)	65
BstACI	GRCGYC	1 cut(s)	74
BstAPI	GCANNNNNTGC	2 cut(s)	51, 179
BstC8I	GCNNGC	1 cut(s)	7
BstDSI	CCRYGG	1 cut(s)	77
BstF5I	GGATG	1 cut(s)	325
BstFNI	CGCG	1 cut(s)	22
BstH2I	RGCGCY	1 cut(s)	77
BstHHI	GCGC	2 cut(s)	22, 76
BstKTI	GATC	2 cut(s)	61, 84
BstMBI	GATC	2 cut(s)	58, 81
BstMCI	CGRYCG	3 cut(s)	29, 61, 189
BstMWI	GCNNNNNNNGC	3 cut(s)	51, 54, 179
BstSCI	CCNGG	2 cut(s)	218, 246
BstUI	CGCG	1 cut(s)	22
BstV1I	GCAGC	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	5, 218
BtgI	CCRYGG	1 cut(s)	77
BtrI	CACGTC	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	325
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	2 cut(s)	22, 76
Cfr10I	RCCGGY	1 cut(s)	91
Cfr13I	GGNCC	3 cut(s)	4, 168, 244
CviAII	CATG	4 cut(s)	105, 228, 252, 367
CviJI	RGCY	6 cut(s)	5, 48, 125, 139, 218, 386
CviKI_1	RGCY	6 cut(s)	5, 48, 125, 139, 218, 386
DinI	GGCGCC	1 cut(s)	75
DpnI	GATC	2 cut(s)	60, 83
DpnII	GATC	2 cut(s)	58, 81
DrdI	GACNNNNNNGTC	1 cut(s)	155
DseDI	GACNNNNNNGTC	1 cut(s)	155
EciI	GGCGGA	1 cut(s)	271
Eco47I	GGWCC	2 cut(s)	168, 244
Eco88I	CYCGRG	1 cut(s)	112
EgeI	GGCGCC	1 cut(s)	75
EheI	GGCGCC	1 cut(s)	75
FaeI	CATG	4 cut(s)	108, 231, 255, 370
FaiI	YATR	6 cut(s)	106, 229, 240, 253, 354, 368
FatI	CATG	4 cut(s)	104, 227, 251, 366
FauI	CCCGC	1 cut(s)	14
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	7 cut(s)	23, 46, 55, 72, 96, 123, 137
FokI	GGATG	1 cut(s)	332
Fsp4HI	GCNGC	7 cut(s)	23, 46, 55, 72, 96, 123, 137
GlaI	GCGC	2 cut(s)	21, 75
GluI	GCNGC	7 cut(s)	23, 46, 55, 72, 96, 123, 137
HaeII	RGCGCY	1 cut(s)	77
HaeIII	GGCC	2 cut(s)	5, 218
HapII	CCGG	6 cut(s)	92, 128, 153, 189, 219, 247
HhaI	GCGC	2 cut(s)	22, 76
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	4 cut(s)	108, 231, 255, 370
Hin6I	GCGC	2 cut(s)	20, 74
HinP1I	GCGC	2 cut(s)	20, 74
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	3 cut(s)	115, 149, 224
HpaII	CCGG	6 cut(s)	92, 128, 153, 189, 219, 247
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188III	TCNNGA	1 cut(s)	65
Hpy8I	GTNNAC	1 cut(s)	148
Hpy99I	CGWCG	2 cut(s)	16, 19
HpyAV	CCTTC	2 cut(s)	208, 310
HpyCH4IV	ACGT	2 cut(s)	11, 289
HpyCH4V	TGCA	4 cut(s)	45, 88, 108, 356
HpyF10VI	GCNNNNNNNGC	3 cut(s)	51, 54, 179
HpySE526I	ACGT	2 cut(s)	11, 289
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	4 cut(s)	108, 231, 255, 370
HspAI	GCGC	2 cut(s)	20, 74
KasI	GGCGCC	1 cut(s)	73
Kzo9I	GATC	2 cut(s)	58, 81
LmnI	GCTCC	1 cut(s)	130
LpnPI	CCDG	6 cut(s)	105, 141, 166, 202, 232, 260
Lsp1109I	GCAGC	1 cut(s)	57
MaeII	ACGT	2 cut(s)	11, 289
MaeIII	GTNAC	1 cut(s)	62
MalI	GATC	2 cut(s)	60, 83
MboI	GATC	2 cut(s)	58, 81
MboII	GAAGA	1 cut(s)	386
MluCI	AATT	2 cut(s)	276, 334
Mly113I	GGCGCC	1 cut(s)	74
MlyI	GAGTC	2 cut(s)	124, 143
MmeI	TCCRAC	1 cut(s)	272
MnlI	CCTC	4 cut(s)	61, 195, 204, 235
MspI	CCGG	6 cut(s)	92, 128, 153, 189, 219, 247
MspR9I	CCNGG	2 cut(s)	220, 248
MvnI	CGCG	1 cut(s)	22
MwoI	GCNNNNNNNGC	3 cut(s)	51, 54, 179
NarI	GGCGCC	1 cut(s)	74
NciI	CCSGG	2 cut(s)	220, 248
NdeII	GATC	2 cut(s)	58, 81
NlaIII	CATG	4 cut(s)	108, 231, 255, 370
NlaIV	GGNNCC	3 cut(s)	75, 126, 169
NmuCI	GTSAC	1 cut(s)	62
PaeR7I	CTCGAG	1 cut(s)	112
PcsI	WCGNNNNNNNCGW	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	224
PkrI	GCNGC	7 cut(s)	24, 47, 56, 73, 97, 124, 138
Ple19I	CGATCG	1 cut(s)	61
PleI	GAGTC	2 cut(s)	123, 143
PluTI	GGCGCC	1 cut(s)	77
PpsI	GAGTC	2 cut(s)	123, 143
PspN4I	GGNNCC	3 cut(s)	75, 126, 169
PspPI	GGNCC	3 cut(s)	4, 168, 244
PspXI	VCTCGAGB	1 cut(s)	112
PvuI	CGATCG	1 cut(s)	61
SalI	GTCGAC	1 cut(s)	146
SatI	GCNGC	7 cut(s)	23, 46, 55, 72, 96, 123, 137
Sau3AI	GATC	2 cut(s)	58, 81
Sau96I	GGNCC	3 cut(s)	4, 168, 244
SchI	GAGTC	2 cut(s)	124, 143
ScrFI	CCNGG	2 cut(s)	220, 248
SetI	ASST	5 cut(s)	14, 206, 246, 292, 388
SfoI	GGCGCC	1 cut(s)	75
Sfr274I	CTCGAG	1 cut(s)	112
SinI	GGWCC	2 cut(s)	168, 244
SlaI	CTCGAG	1 cut(s)	112
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
Sse9I	AATT	2 cut(s)	276, 334
SspDI	GGCGCC	1 cut(s)	73
StyD4I	CCNGG	2 cut(s)	218, 246
TaiI	ACGT	2 cut(s)	14, 292
TaqI	TCGA	4 cut(s)	29, 113, 147, 300
TasI	AATT	2 cut(s)	276, 334
TauI	GCSGC	6 cut(s)	25, 57, 74, 98, 125, 139
TfiI	GAWTC	1 cut(s)	224
TseFI	GTSAC	1 cut(s)	62
TseI	GCWGC	1 cut(s)	45
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	2 cut(s)	93, 216
TspGWI	ACGGA	1 cut(s)	94
VpaK11BI	GGWCC	2 cut(s)	168, 244
XhoI	CTCGAG	1 cut(s)	112
XmiI	GTMKAC	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.