Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0012684

Physical Location & Seq

Genomic Coordinates Reverse (-)

35153965 .. 35154819

Gene Structure 855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG266800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGTCCATGACCACGCCTCCAACCGCCATGGCCTGCACGTCGTCGGCGCTGGGAGTCAATGCCATTGGTGAGTTGGGAAGTTACCTTGGAGGAGAGAGTGTTCATGGCTACTGCATTAAGATGGGATTTTCCTATAATTTACATGTGGTCACTGCTTTGATTTATGTGTATACAAAGAACGGGGAAATTGACTTGGCACGTTGGATTTTCGATGGAGTTGCTGTGAAGGATGTTGTTTTGTGGAATTGTTTGGTAGGCAAGTATGCAAAATGTGGCATGGTAGAAGAAGCAGTAGCTTTGCTACGGCTGATGAAACTTGGTAGGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

109

Amino Acids

11.77

Weight (kDa)

6.7

Isoelectric Point (pI)

40.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	79 - 105	5.7e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012684)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0120821 RchiOBHm_Chr3g0468231 RchiOBHm_Chr3g0481101 RchiOBHm_Chr5g0015941 RchiOBHm_Chr5g0049911 RchiOBHm_Chr6g0272371 RchiOBHm_Chr6g0285951 RchiOBHm_Chr7g0229731 RchiOBHm_Chr7g0242881
rosa_laevigata	RLG00000010346 RLG00000025577
rosa_multiflora	Rmu_sc0000181.1_g000006 Rmu_sc0006492.1_g000024
rosa_roxburghii	Rroxscaffold_3G00275980 Rroxscaffold_5G00376450 Rroxscaffold_7G00178630
rosa_samantha	Rh5AG266800 Rh6CG292600 Rh6DG284700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	170
AciI	CCGC	1 cut(s)	24
AflIII	ACRYGT	1 cut(s)	142
AjiI	CACGTC	1 cut(s)	39
AloI	GAACNNNNNNTCC	2 cut(s)	84, 116
AluBI	AGCT	1 cut(s)	296
AluI	AGCT	1 cut(s)	296
AoxI	GGCC	1 cut(s)	30
AspLEI	GCGC	1 cut(s)	49
AsuHPI	GGTGA	1 cut(s)	80
BccI	CCATC	2 cut(s)	115, 206
BceAI	ACGGC	1 cut(s)	320
BcgI	CGANNNNNNTGC	2 cut(s)	200, 234
BfaI	CTAG	1 cut(s)	328
BfoI	RGCGCY	1 cut(s)	50
BmgBI	CACGTC	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	27, 85
BsaXI	ACNNNNNCTCC	5 cut(s)	31, 84, 114, 207, 237
BseDI	CCNNGG	2 cut(s)	27, 85
BseGI	GGATG	1 cut(s)	235
BseRI	GAGGAG	1 cut(s)	105
BseYI	CCCAGC	1 cut(s)	49
BsgI	GTGCAG	1 cut(s)	19
BshFI	GGCC	1 cut(s)	32
BsnI	GGCC	1 cut(s)	32
Bsp19I	CCATGG	1 cut(s)	27
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	1 cut(s)	32
BssECI	CCNNGG	2 cut(s)	27, 85
BssNAI	GTATAC	1 cut(s)	171
BssT1I	CCWWGG	2 cut(s)	27, 85
Bst1107I	GTATAC	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	34
BstDSI	CCRYGG	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	235
BstH2I	RGCGCY	1 cut(s)	50
BstHHI	GCGC	1 cut(s)	49
BstNSI	RCATGY	1 cut(s)	146
BstZ17I	GTATAC	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	32
BtgI	CCRYGG	1 cut(s)	27
BtrI	CACGTC	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	235
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	34
CfoI	GCGC	1 cut(s)	49
CviAII	CATG	5 cut(s)	7, 28, 104, 143, 277
CviJI	RGCY	4 cut(s)	32, 108, 296, 307
CviKI_1	RGCY	4 cut(s)	32, 108, 296, 307
Eco130I	CCWWGG	2 cut(s)	27, 85
EcoT14I	CCWWGG	2 cut(s)	27, 85
ErhI	CCWWGG	2 cut(s)	27, 85
FaeI	CATG	5 cut(s)	10, 31, 107, 146, 280
FaiI	YATR	9 cut(s)	8, 29, 105, 135, 144, 165, 171, 264, 278
FatI	CATG	5 cut(s)	6, 27, 103, 142, 276
FblI	GTMKAC	1 cut(s)	170
FokI	GGATG	1 cut(s)	242
FspBI	CTAG	1 cut(s)	328
GlaI	GCGC	1 cut(s)	48
GsaI	CCCAGC	1 cut(s)	53
HaeII	RGCGCY	1 cut(s)	50
HaeIII	GGCC	1 cut(s)	32
HhaI	GCGC	1 cut(s)	49
Hin1II	CATG	5 cut(s)	10, 31, 107, 146, 280
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HinfI	GANTC	1 cut(s)	54
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	1 cut(s)	171
Hpy8I	GTNNAC	1 cut(s)	171
Hpy99I	CGWCG	2 cut(s)	43, 46
HpyAV	CCTTC	1 cut(s)	220
HpyCH4IV	ACGT	2 cut(s)	38, 199
HpyCH4V	TGCA	3 cut(s)	36, 114, 266
HpySE526I	ACGT	2 cut(s)	38, 199
Hsp92II	CATG	5 cut(s)	10, 31, 107, 146, 280
HspAI	GCGC	1 cut(s)	47
LpnPI	CCDG	2 cut(s)	35, 46
MaeI	CTAG	1 cut(s)	328
MaeII	ACGT	2 cut(s)	38, 199
MaeIII	GTNAC	2 cut(s)	80, 148
MboII	GAAGA	1 cut(s)	296
MluCI	AATT	3 cut(s)	136, 186, 244
MlyI	GAGTC	1 cut(s)	63
MmeI	TCCRAC	2 cut(s)	44, 182
MnlI	CCTC	2 cut(s)	27, 83
MseI	TTAA	1 cut(s)	117
MslI	CAYNNNNRTG	1 cut(s)	119
NcoI	CCATGG	1 cut(s)	27
NlaIII	CATG	5 cut(s)	10, 31, 107, 146, 280
NmuCI	GTSAC	1 cut(s)	148
NspI	RCATGY	1 cut(s)	146
PciI	ACATGT	1 cut(s)	142
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
PscI	ACATGT	1 cut(s)	142
PspFI	CCCAGC	1 cut(s)	49
RseI	CAYNNNNRTG	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	117
SchI	GAGTC	1 cut(s)	63
SetI	ASST	4 cut(s)	41, 87, 202, 298
SmiMI	CAYNNNNRTG	1 cut(s)	119
Sse9I	AATT	3 cut(s)	136, 186, 244
SsiI	CCGC	1 cut(s)	24
SspMI	CTAG	1 cut(s)	328
StyI	CCWWGG	2 cut(s)	27, 85
TaiI	ACGT	2 cut(s)	41, 202
TaqI	TCGA	1 cut(s)	210
TasI	AATT	3 cut(s)	136, 186, 244
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	1 cut(s)	148
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	2 cut(s)	92, 326
TspRI	CASTG	1 cut(s)	157
XceI	RCATGY	1 cut(s)	146
XcmI	CCANNNNNNNNNTGG	1 cut(s)	70
XmiI	GTMKAC	1 cut(s)	170
XspI	CTAG	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.