Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000181.1

Orthogroup ID

OG0012684

Physical Location & Seq

Genomic Coordinates Reverse (-)

25250 .. 26150

Gene Structure 901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000181.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atgaggtctgggcatggcggatttatcactgtaaagaatacccttctgcattattactgtgtttgtgggaaaattgaggatgcccaccacttgttcgatgaatttcctcagagaaatgatttgatttcatggaatactttgatgggtgattaccttcatgtttcgcagcctcgtgtgattgtggacttgtttaaggaaatgtgcattggtggttttgaagctagtgtaatcactgttctgtatcttttatcagccattgccggtgacaggattctggcgatcggtgaccggaatccggcggccggtgacgggctccggcgaagtctccaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

110

Amino Acids

12.26

Weight (kDa)

6.16

Isoelectric Point (pI)

43.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012684)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0120821 RchiOBHm_Chr3g0468231 RchiOBHm_Chr3g0481101 RchiOBHm_Chr5g0015941 RchiOBHm_Chr5g0049911 RchiOBHm_Chr6g0272371 RchiOBHm_Chr6g0285951 RchiOBHm_Chr7g0229731 RchiOBHm_Chr7g0242881
rosa_laevigata	RLG00000010346 RLG00000025577
rosa_multiflora	Rmu_sc0000181.1_g000006 Rmu_sc0006492.1_g000024
rosa_roxburghii	Rroxscaffold_3G00275980 Rroxscaffold_5G00376450 Rroxscaffold_7G00178630
rosa_samantha	Rh5AG266800 Rh6CG292600 Rh6DG284700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	18, 299
AcoI	YGGCCR	1 cut(s)	300
AcsI	RAATTY	1 cut(s)	101
AfiI	CCNNNNNNNGG	4 cut(s)	267, 295, 302, 309
AgsI	TTSAA	1 cut(s)	218
AjuI	GAANNNNNNNTTGG	2 cut(s)	189, 221
AluBI	AGCT	1 cut(s)	221
AluI	AGCT	1 cut(s)	221
Alw26I	GTCTC	1 cut(s)	329
AoxI	GGCC	1 cut(s)	300
ApeKI	GCWGC	1 cut(s)	166
ApoI	RAATTY	1 cut(s)	101
AsuHPI	GGTGA	4 cut(s)	158, 275, 296, 317
BanII	GRGCYC	1 cut(s)	315
BauI	CACGAG	1 cut(s)	171
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	1 cut(s)	136
BcoDI	GTCTC	1 cut(s)	329
BfaI	CTAG	1 cut(s)	222
BisI	GCNGC	2 cut(s)	167, 300
BlsI	GCNGC	2 cut(s)	168, 301
BmiI	GGNNCC	1 cut(s)	314
BmsI	GCATC	1 cut(s)	70
BsaWI	WCCGGW	1 cut(s)	288
Bsc4I	CCNNNNNNNGG	4 cut(s)	267, 295, 302, 309
Bse118I	RCCGGY	2 cut(s)	260, 302
Bse3DI	GCAATG	1 cut(s)	255
BseGI	GGATG	1 cut(s)	85
BseLI	CCNNNNNNNGG	4 cut(s)	267, 295, 302, 309
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	122
BseX3I	CGGCCG	1 cut(s)	300
BseXI	GCAGC	1 cut(s)	178
Bsh1285I	CGRYCG	2 cut(s)	282, 303
BshFI	GGCC	1 cut(s)	302
BsiEI	CGRYCG	2 cut(s)	282, 303
BsiSI	CCGG	5 cut(s)	261, 289, 296, 303, 316
BslI	CCNNNNNNNGG	4 cut(s)	267, 295, 302, 309
BsmAI	GTCTC	1 cut(s)	329
BsnI	GGCC	1 cut(s)	302
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp143I	GATC	1 cut(s)	279
BspACI	CCGC	2 cut(s)	18, 299
BspANI	GGCC	1 cut(s)	302
BspCNI	CTCAG	1 cut(s)	121
BspLI	GGNNCC	1 cut(s)	314
BsrDI	GCAATG	1 cut(s)	255
BsrFI	RCCGGY	2 cut(s)	260, 302
BssAI	RCCGGY	2 cut(s)	260, 302
BssMI	GATC	1 cut(s)	279
BssSI	CACGAG	1 cut(s)	171
Bst2BI	CACGAG	1 cut(s)	171
Bst4CI	ACNGT	3 cut(s)	31, 59, 235
BstDEI	CTNAG	1 cut(s)	108
BstEII	GGTNACC	1 cut(s)	284
BstF5I	GGATG	1 cut(s)	85
BstKTI	GATC	1 cut(s)	282
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	1 cut(s)	279
BstMCI	CGRYCG	2 cut(s)	282, 303
BstPI	GGTNACC	1 cut(s)	284
BstV1I	GCAGC	1 cut(s)	178
BstZI	CGGCCG	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	302
BtsCI	GGATG	1 cut(s)	85
BtsIMutI	CAGTG	2 cut(s)	27, 231
Cfr10I	RCCGGY	2 cut(s)	260, 302
CviAII	CATG	3 cut(s)	14, 129, 158
CviJI	RGCY	5 cut(s)	169, 221, 254, 302, 313
CviKI_1	RGCY	5 cut(s)	169, 221, 254, 302, 313
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	1 cut(s)	281
DpnII	GATC	1 cut(s)	279
EaeI	YGGCCR	1 cut(s)	300
EagI	CGGCCG	1 cut(s)	300
EciI	GGCGGA	1 cut(s)	33
EclXI	CGGCCG	1 cut(s)	300
Eco24I	GRGCYC	1 cut(s)	315
Eco52I	CGGCCG	1 cut(s)	300
Eco91I	GGTNACC	1 cut(s)	284
EcoO65I	GGTNACC	1 cut(s)	284
EcoT38I	GRGCYC	1 cut(s)	315
FaeI	CATG	3 cut(s)	17, 132, 161
FaiI	YATR	3 cut(s)	15, 130, 159
FatI	CATG	3 cut(s)	13, 128, 157
Fnu4HI	GCNGC	2 cut(s)	167, 300
FokI	GGATG	1 cut(s)	92
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	2 cut(s)	167, 300
FspBI	CTAG	1 cut(s)	222
GluI	GCNGC	2 cut(s)	167, 300
HaeIII	GGCC	1 cut(s)	302
HapII	CCGG	5 cut(s)	261, 289, 296, 303, 316
Hin1II	CATG	3 cut(s)	17, 132, 161
HinfI	GANTC	2 cut(s)	271, 292
HpaII	CCGG	5 cut(s)	261, 289, 296, 303, 316
HphI	GGTGA	4 cut(s)	158, 275, 296, 317
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	1 cut(s)	111
Hpy8I	GTNNAC	1 cut(s)	184
HpyAV	CCTTC	2 cut(s)	53, 164
HpyCH4III	ACNGT	3 cut(s)	31, 59, 235
HpyCH4V	TGCA	2 cut(s)	49, 204
HpyF3I	CTNAG	1 cut(s)	108
Hsp92II	CATG	3 cut(s)	17, 132, 161
Kzo9I	GATC	1 cut(s)	279
LmnI	GCTCC	1 cut(s)	318
LpnPI	CCDG	7 cut(s)	253, 260, 274, 302, 309, 316, 329
Lsp1109I	GCAGC	1 cut(s)	178
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	1 cut(s)	222
MaeIII	GTNAC	3 cut(s)	263, 284, 305
MalI	GATC	1 cut(s)	281
MboI	GATC	1 cut(s)	279
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	2 cut(s)	72, 101
MnlI	CCTC	3 cut(s)	70, 117, 180
MseI	TTAA	1 cut(s)	192
MspI	CCGG	5 cut(s)	261, 289, 296, 303, 316
NdeII	GATC	1 cut(s)	279
NlaIII	CATG	3 cut(s)	17, 132, 161
NlaIV	GGNNCC	1 cut(s)	314
NmuCI	GTSAC	3 cut(s)	263, 284, 305
PfeI	GAWTC	2 cut(s)	271, 292
PkrI	GCNGC	2 cut(s)	168, 301
Ple19I	CGATCG	1 cut(s)	282
PspEI	GGTNACC	1 cut(s)	284
PspN4I	GGNNCC	1 cut(s)	314
PsrI	GAACNNNNNNTAC	2 cut(s)	219, 251
PvuI	CGATCG	1 cut(s)	282
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	2 cut(s)	167, 300
Sau3AI	GATC	1 cut(s)	279
SduI	GDGCHC	1 cut(s)	315
SetI	ASST	3 cut(s)	8, 156, 223
SfaNI	GCATC	1 cut(s)	70
Sse9I	AATT	2 cut(s)	72, 101
SsiI	CCGC	2 cut(s)	18, 299
SspMI	CTAG	1 cut(s)	222
TaaI	ACNGT	3 cut(s)	31, 59, 235
TaqI	TCGA	1 cut(s)	96
TasI	AATT	2 cut(s)	72, 101
TauI	GCSGC	1 cut(s)	302
TfiI	GAWTC	2 cut(s)	271, 292
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	2 cut(s)	34, 238
TseFI	GTSAC	3 cut(s)	263, 284, 305
TseI	GCWGC	1 cut(s)	166
Tsp45I	GTSAC	3 cut(s)	263, 284, 305
TspDTI	ATGAA	3 cut(s)	114, 117, 146
TspRI	CASTG	2 cut(s)	34, 238
XapI	RAATTY	1 cut(s)	101
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.