Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0012684

Physical Location & Seq

Genomic Coordinates Reverse (-)

46814113 .. 46814770

Gene Structure 658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025577

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGCCTGCACGTGGTCGCCGCTAGCAGTCGATGGTAATTCGTTTGCAGCCCAGAAGCCGGCGATCCTCTTTCTCTATCTTCGTGAAGGTGCTGCCGGCGATCTTTTGCAGCCCAGAAGCCGGCGATCTCGACTCCGGTGCCGGGTCCAGGTCTGCAACGATTGCGACGACCGGAGTTCCGCCGAGGTCGAGGAGGAAGGCCAGGGGATTCATGGGGTTGTTATGAGGTCTGGGCATGGCGGATTTATCACTGTAAAGAATACCCTTCTGCATTGTTACTGTGTTTGTGGGAAAATTGAGGATGCCCACCACTTGTTCGATGAATTTCCTCAGAGAAATGATTTGATTTCATGGAATACTTTGATGGGTGATTACCTTCATGTTTCGCAGCCTCGTGTGATTGTGGACTTGCTTAAGGAAATGTGCATTGGTGGTTTTGAAGCTAGTGTAACCACTGTTCTGTATCTTTTATCAGCCATTGGTGAGTTGGAAGTTACCTTGGAGGAGAGAGTGTTCATGGCTACTGCATTAAGATGGGATTTTCCTATAATTTACATGTGGTCACTGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

191

Amino Acids

21.4

Weight (kDa)

5.32

Isoelectric Point (pI)

51.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012684)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0120821 RchiOBHm_Chr3g0468231 RchiOBHm_Chr3g0481101 RchiOBHm_Chr5g0015941 RchiOBHm_Chr5g0049911 RchiOBHm_Chr6g0272371 RchiOBHm_Chr6g0285951 RchiOBHm_Chr7g0229731 RchiOBHm_Chr7g0242881
rosa_laevigata	RLG00000010346 RLG00000025577
rosa_multiflora	Rmu_sc0000181.1_g000006 Rmu_sc0006492.1_g000024
rosa_roxburghii	Rroxscaffold_3G00275980 Rroxscaffold_5G00376450 Rroxscaffold_7G00178630
rosa_samantha	Rh5AG266800 Rh6CG292600 Rh6DG284700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	138
AciI	CCGC	3 cut(s)	20, 180, 240
AclWI	GGATC	1 cut(s)	58
AcsI	RAATTY	1 cut(s)	323
AcvI	CACGTG	1 cut(s)	12
AfiI	CCNNNNNNNGG	5 cut(s)	12, 58, 120, 142, 148
AflII	CTTAAG	1 cut(s)	413
AflIII	ACRYGT	1 cut(s)	555
AgsI	TTSAA	1 cut(s)	440
AjnI	CCWGG	2 cut(s)	147, 201
AjuI	GAANNNNNNNTTGG	2 cut(s)	411, 443
AloI	GAACNNNNNNTCC	2 cut(s)	497, 529
AluBI	AGCT	1 cut(s)	443
AluI	AGCT	1 cut(s)	443
AlwI	GGATC	1 cut(s)	58
AoxI	GGCC	2 cut(s)	3, 199
ApeKI	GCWGC	4 cut(s)	47, 92, 109, 388
ApoI	RAATTY	1 cut(s)	323
AspS9I	GGNCC	1 cut(s)	145
AsuC2I	CCSGG	1 cut(s)	143
AsuHPI	GGTGA	2 cut(s)	380, 494
AsuNHI	GCTAGC	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	145
BanI	GGYRCC	1 cut(s)	138
BauI	CACGAG	1 cut(s)	393
BbrPI	CACGTG	1 cut(s)	12
BbvI	GCAGC	4 cut(s)	59, 79, 121, 400
BccI	CCATC	3 cut(s)	26, 358, 528
BcgI	CGANNNNNNTGC	2 cut(s)	120, 154
BciT130I	CCWGG	2 cut(s)	149, 203
BcnI	CCSGG	1 cut(s)	143
BfaI	CTAG	2 cut(s)	23, 444
BfrI	CTTAAG	1 cut(s)	413
BisI	GCNGC	5 cut(s)	20, 48, 93, 110, 389
BlsI	GCNGC	5 cut(s)	21, 49, 94, 111, 390
Bme1390I	CCNGG	3 cut(s)	143, 149, 203
Bme18I	GGWCC	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	145
BmiI	GGNNCC	2 cut(s)	140, 146
BmrFI	CCNGG	3 cut(s)	143, 149, 203
BmsI	GCATC	1 cut(s)	292
BmtI	GCTAGC	1 cut(s)	26
BpuMI	CCSGG	1 cut(s)	143
BsaAI	YACGTR	1 cut(s)	12
BsaJI	CCNNGG	3 cut(s)	183, 202, 498
BsaWI	WCCGGW	2 cut(s)	135, 171
BsaXI	ACNNNNNCTCC	2 cut(s)	497, 527
Bsc4I	CCNNNNNNNGG	5 cut(s)	12, 58, 120, 142, 148
Bse118I	RCCGGY	3 cut(s)	58, 95, 120
BseBI	CCWGG	2 cut(s)	149, 203
BseDI	CCNNGG	3 cut(s)	183, 202, 498
BseGI	GGATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	5 cut(s)	12, 58, 120, 142, 148
BseMII	CTCAG	1 cut(s)	344
BseRI	GAGGAG	2 cut(s)	206, 518
BseXI	GCAGC	4 cut(s)	59, 79, 121, 400
Bsh1285I	CGRYCG	1 cut(s)	172
BshFI	GGCC	2 cut(s)	5, 201
BshNI	GGYRCC	1 cut(s)	138
BsiEI	CGRYCG	1 cut(s)	172
BsiSI	CCGG	6 cut(s)	59, 96, 121, 136, 142, 172
BslI	CCNNNNNNNGG	5 cut(s)	12, 58, 120, 142, 148
BsnI	GGCC	2 cut(s)	5, 201
Bsp143I	GATC	3 cut(s)	63, 100, 125
BspACI	CCGC	3 cut(s)	20, 180, 240
BspANI	GGCC	2 cut(s)	5, 201
BspCNI	CTCAG	1 cut(s)	343
BspLI	GGNNCC	2 cut(s)	140, 146
BspOI	GCTAGC	1 cut(s)	26
BspPI	GGATC	1 cut(s)	58
BspT107I	GGYRCC	1 cut(s)	138
BspTI	CTTAAG	1 cut(s)	413
BsrFI	RCCGGY	3 cut(s)	58, 95, 120
BssAI	RCCGGY	3 cut(s)	58, 95, 120
BssECI	CCNNGG	3 cut(s)	183, 202, 498
BssMI	GATC	3 cut(s)	63, 100, 125
BssSI	CACGAG	1 cut(s)	393
BssT1I	CCWWGG	1 cut(s)	498
Bst2BI	CACGAG	1 cut(s)	393
Bst2UI	CCWGG	2 cut(s)	149, 203
Bst4CI	ACNGT	3 cut(s)	253, 281, 457
BstAFI	CTTAAG	1 cut(s)	413
BstAPI	GCANNNNNTGC	1 cut(s)	162
BstBAI	YACGTR	1 cut(s)	12
BstC8I	GCNNGC	5 cut(s)	7, 24, 60, 97, 122
BstDEI	CTNAG	1 cut(s)	330
BstF5I	GGATG	1 cut(s)	307
BstKTI	GATC	3 cut(s)	66, 103, 128
BstMBI	GATC	3 cut(s)	63, 100, 125
BstMCI	CGRYCG	1 cut(s)	172
BstMWI	GCNNNNNNNGC	1 cut(s)	162
BstNI	CCWGG	2 cut(s)	149, 203
BstNSI	RCATGY	1 cut(s)	559
BstSCI	CCNGG	3 cut(s)	141, 147, 201
BstV1I	GCAGC	4 cut(s)	59, 79, 121, 400
BsuRI	GGCC	2 cut(s)	5, 201
BtsCI	GGATG	1 cut(s)	307
BtsI	GCAGTG	1 cut(s)	563
BtsIMutI	CAGTG	3 cut(s)	249, 453, 563
Cac8I	GCNNGC	5 cut(s)	7, 24, 60, 97, 122
Cfr10I	RCCGGY	3 cut(s)	58, 95, 120
Cfr13I	GGNCC	1 cut(s)	145
CviAII	CATG	6 cut(s)	212, 236, 351, 380, 517, 556
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	3 cut(s)	65, 102, 127
DpnII	GATC	3 cut(s)	63, 100, 125
EciI	GGCGGA	2 cut(s)	169, 255
Eco130I	CCWWGG	1 cut(s)	498
Eco47I	GGWCC	1 cut(s)	145
Eco72I	CACGTG	1 cut(s)	12
EcoRII	CCWGG	2 cut(s)	147, 201
EcoT14I	CCWWGG	1 cut(s)	498
ErhI	CCWWGG	1 cut(s)	498
FaeI	CATG	6 cut(s)	215, 239, 354, 383, 520, 559
FaiI	YATR	8 cut(s)	213, 224, 237, 352, 381, 518, 548, 557
FatI	CATG	6 cut(s)	211, 235, 350, 379, 516, 555
Fnu4HI	GCNGC	5 cut(s)	20, 48, 93, 110, 389
FokI	GGATG	1 cut(s)	314
Fsp4HI	GCNGC	5 cut(s)	20, 48, 93, 110, 389
FspBI	CTAG	2 cut(s)	23, 444
GluI	GCNGC	5 cut(s)	20, 48, 93, 110, 389
HaeIII	GGCC	2 cut(s)	5, 201
HapII	CCGG	6 cut(s)	59, 96, 121, 136, 142, 172
Hin1II	CATG	6 cut(s)	215, 239, 354, 383, 520, 559
HinfI	GANTC	2 cut(s)	132, 208
HpaII	CCGG	6 cut(s)	59, 96, 121, 136, 142, 172
HphI	GGTGA	2 cut(s)	380, 494
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	1 cut(s)	333
Hpy188III	TCNNGA	2 cut(s)	83, 129
Hpy8I	GTNNAC	1 cut(s)	406
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	4 cut(s)	80, 191, 275, 386
HpyCH4III	ACNGT	3 cut(s)	253, 281, 457
HpyCH4IV	ACGT	1 cut(s)	11
HpyCH4V	TGCA	7 cut(s)	9, 47, 109, 156, 271, 426, 527
HpyF10VI	GCNNNNNNNGC	1 cut(s)	162
HpyF3I	CTNAG	1 cut(s)	330
HpySE526I	ACGT	1 cut(s)	11
Hsp92II	CATG	6 cut(s)	215, 239, 354, 383, 520, 559
KroI	GCCGGC	3 cut(s)	58, 95, 120
KroNI	GCCGGC	3 cut(s)	60, 97, 122
Kzo9I	GATC	3 cut(s)	63, 100, 125
Lsp1109I	GCAGC	4 cut(s)	59, 79, 121, 400
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	2 cut(s)	23, 444
MaeII	ACGT	1 cut(s)	11
MaeIII	GTNAC	4 cut(s)	275, 448, 493, 561
MalI	GATC	3 cut(s)	65, 102, 127
MboI	GATC	3 cut(s)	63, 100, 125
MboII	GAAGA	1 cut(s)	71
MluCI	AATT	4 cut(s)	37, 294, 323, 549
MlyI	GAGTC	1 cut(s)	126
MmeI	TCCRAC	1 cut(s)	468
MnlI	CCTC	9 cut(s)	77, 178, 184, 187, 219, 292, 339, 402, 496
MroNI	GCCGGC	3 cut(s)	58, 95, 120
MseI	TTAA	2 cut(s)	414, 530
MslI	CAYNNNNRTG	1 cut(s)	532
MspCI	CTTAAG	1 cut(s)	413
MspI	CCGG	6 cut(s)	59, 96, 121, 136, 142, 172
MspR9I	CCNGG	3 cut(s)	143, 149, 203
MvaI	CCWGG	2 cut(s)	149, 203
MwoI	GCNNNNNNNGC	1 cut(s)	162
NaeI	GCCGGC	3 cut(s)	60, 97, 122
NciI	CCSGG	1 cut(s)	143
NdeII	GATC	3 cut(s)	63, 100, 125
NgoMIV	GCCGGC	3 cut(s)	58, 95, 120
NheI	GCTAGC	1 cut(s)	22
NlaIII	CATG	6 cut(s)	215, 239, 354, 383, 520, 559
NlaIV	GGNNCC	2 cut(s)	140, 146
NmeAIII	GCCGAG	1 cut(s)	208
NmuCI	GTSAC	1 cut(s)	561
NspI	RCATGY	1 cut(s)	559
PciI	ACATGT	1 cut(s)	555
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PdiI	GCCGGC	3 cut(s)	60, 97, 122
PfeI	GAWTC	1 cut(s)	208
PkrI	GCNGC	5 cut(s)	21, 49, 94, 111, 390
PleI	GAGTC	1 cut(s)	126
PmaCI	CACGTG	1 cut(s)	12
PmlI	CACGTG	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	126
Ppu21I	YACGTR	1 cut(s)	12
PscI	ACATGT	1 cut(s)	555
Psp6I	CCWGG	2 cut(s)	147, 201
PspCI	CACGTG	1 cut(s)	12
PspGI	CCWGG	2 cut(s)	147, 201
PspN4I	GGNNCC	2 cut(s)	140, 146
PspPI	GGNCC	1 cut(s)	145
PsrI	GAACNNNNNNTAC	2 cut(s)	441, 473
RseI	CAYNNNNRTG	1 cut(s)	532
SaqAI	TTAA	2 cut(s)	414, 530
SatI	GCNGC	5 cut(s)	20, 48, 93, 110, 389
Sau3AI	GATC	3 cut(s)	63, 100, 125
Sau96I	GGNCC	1 cut(s)	145
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	3 cut(s)	143, 149, 203
SetI	ASST	8 cut(s)	14, 91, 153, 189, 230, 378, 445, 500
SfaNI	GCATC	1 cut(s)	292
SinI	GGWCC	1 cut(s)	145
SmiMI	CAYNNNNRTG	1 cut(s)	532
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
Sse9I	AATT	4 cut(s)	37, 294, 323, 549
SsiI	CCGC	3 cut(s)	20, 180, 240
SspMI	CTAG	2 cut(s)	23, 444
StyD4I	CCNGG	3 cut(s)	141, 147, 201
StyI	CCWWGG	1 cut(s)	498
TaaI	ACNGT	3 cut(s)	253, 281, 457
TaiI	ACGT	1 cut(s)	14
TaqI	TCGA	4 cut(s)	30, 130, 189, 318
TasI	AATT	4 cut(s)	37, 294, 323, 549
TauI	GCSGC	1 cut(s)	22
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	2 cut(s)	414, 530
Tru9I	TTAA	2 cut(s)	414, 530
TscAI	CASTG	3 cut(s)	256, 460, 570
TseFI	GTSAC	1 cut(s)	561
TseI	GCWGC	4 cut(s)	47, 92, 109, 388
Tsp45I	GTSAC	1 cut(s)	561
TspDTI	ATGAA	5 cut(s)	200, 336, 339, 368, 505
TspRI	CASTG	3 cut(s)	256, 460, 570
Vha464I	CTTAAG	1 cut(s)	413
VpaK11BI	GGWCC	1 cut(s)	145
XapI	RAATTY	1 cut(s)	323
XceI	RCATGY	1 cut(s)	559
XcmI	CCANNNNNNNNNTGG	2 cut(s)	209, 484
XspI	CTAG	2 cut(s)	23, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.