Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007349

Physical Location & Seq

Genomic Coordinates Reverse (-)

4772212 .. 4777683

Gene Structure 5472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010848

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2100 bp

ATGGTGAATTCTATGGTGGAGCGCGCCACGAGCGACATGCTTATCGGTCCTGATTGGGCCATGAACATCGAAATCTGCGACATATGCAACCACGACCCCGTGCAAGCAAAGGATGTTGTTAAAGGTATAAAGAAGCGCCTTGGAAGTAGGAATTCAAAAGTTCAACTTCTTGCCCTTACACTGTTGGAAACAATAATAAAGAATTGTGGAGATATTGTGCATATGCATGTAGCAGAGAAAGACCTCCTCCATGAGATGGTAAAAATAGTAAAGAAGAAGCCGGACTATCATGTCAAAGAGAAGATATTGATCCTGATAGATACCTGGCAAGAAGCTTTCGGTGGCCCAAGAGCAAGATATCCACAATACTATGCTGCATACCAGGAATTGTTGCGTGCTGGAGCAGTATTCCCCCACAGATCTGAGGCCGCTGCTCCTGTATTCACACCTCCCCAGACGCAACCATTGTCATCACTCCCTCAAAATCTGCACAATCCAGATCTTCCGAGAGACATACCTGAGCCTTCTGCAGAGCCCGAGTTCCCAACATTAAGCTTGACTGAAATTCAGAATGCACGGGGTATTATGGATGTCTTGGCGGAAATGCTAAGTGCTATCGATCCAGAGAACAAAGAGGGGCTTAGGCAGGAGGTTATTGTTGATTTGGTTGAACAGTGTCGTACATATAAGCAGAGGGTGGTACACCTTGTTAACTCGACTTCGGATGAATCACTTCTATGTCAAGGACTAGCACTGAATGATGACTTGCAACGTCTTCTAGCCAAACATGAAGCCATTGCTTCAGGCAATCCAGTTCAACCGGATAAACCCAAGGCTGGACCTCCTGGAGCACTAGTAGATGTTGGTGGTCCTCTTATTGACACTGGAAATGATAACAAACAGCTCGATGGGAGATCTACTTCGAGTGCTGGTGCAAGCTCTAATCCACTTAATCAGTTATTACTTACTGGACCTCCAACTACTAATGGTGCAGCTCCTACGACAAAGGTCGATCCCAAGATGGATCTTCTTAGCGGAGATGACTTCAACTCACCGAAGGCAGATTCACTGGCTCTTGTTCCAGTGGATCAACAGCCAAGTAGTACTCCTGTATCCAATGCTCTTGTTCTTATGGACATGTTTTCTGACGGTAACAGTGCCCCAAATCCTGTAAATACCAATTCTCCTCATACAGCCAACCAAACCAGTCCTTTAAACCCACAATTTCAACAGCAGCAGAATTTTCAAGCTCCACAAGGGGGAGTTCTCCCAAATGGAAGTGTCCCAAACATGGGAGCACCTCAGTATGAGCAGTCACTGTACGCGCAAGGAGGTGGTCCCACTTGGAATGGTCAGATTATGCAGCAGCAGCAGCCGCCTTCACCAGGATATGGTTCACCAACCAGCGGATCATTACCACCGCCTCCCTGGGAAGCTCAGTCAGCAGATGATGGAAGCCCAGTAACAGGTTCTCCATATGCACCACCAATGCAAGTCACTCAAGTGGTTGTCACACATGCACAGGGTGGTTTCCATCCACAGGGACCTCAACGGTCAACTAGTGACCCTGTAGTTGGTATGTACATTCAACCAATTACAAGTAACCATTTGTCCGCAATCAATCAGCAGGTTGCTCCAAGCAGTCAGTTGGGTTTGGCACCGTCTCAACCACTTCAAGGGCCATCTATGGGTATGCTTCCACAGCCACCTACTCAAGCTGCATACCCTCAACAAATGTATGGCAATCAAATGGTCCCCTATGGCTATGATCAGCAACAACAACAACAAGCGCAATACCTTCAGCAGCAACAGCAACATCAACAAGGGCAATACCTCCAGCAGCAACATCAACAAGCGCAATACCTCCAGCAGCAACAGCTACATGCGCAATACTATCAGCAACAGCAATATCTTCAGCAGCAGATGCATGGTCTTTCTGTTAATGATAATGGTACGAGAAACTCCTACCAGGCTCCCACATCATCGTATGCCCCACCTAGCAGGCCAGCCAAGCCAGAGGACAAGCTATTTGGAGACCTTGTTGACTTTGCAAAACTGAAACCAACAAAACCCACGGCCGGCAGAACTGGTAGCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006464 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0019899 GO:0030258 GO:0031625 GO:0032446 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042886 GO:0043170 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044389 GO:0044424 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0061630 GO:0061659 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0140096 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAT VHS

Protein Analysis

700

Amino Acids

76.02

Weight (kDa)

5.5

Isoelectric Point (pI)

51.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VHS	PF00790	3 - 128	5.2e-32	VHS domain
GAT	PF03127	196 - 269	3e-18	GAT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32760 AT4G32760 AT4G32760
fragaria_vesca	FvH4_2g35970 FvH4_2g35970 FvH4_2g35970 FvH4_2g35970 FvH4_2g35970
malus_domestica	MD08G1116900.v1.1 MD15G1096400.v1.1
prunus_persica	Prupe.1G451300_v2.0.a1 Prupe.1G451300_v2.0.a1
pyrus_communis	pycom08g09740 pycom15g08850
rosa_chinensis	RchiOBHm_Chr6g0305901
rosa_laevigata	RLG00000010848
rosa_multiflora	Rmu_sc0001809.1_g000047
rosa_roxburghii	Rroxscaffold_7G00162230
rosa_rugosa	Rorug06G0344900 Rorug06G0345000
rosa_samantha	Rh6AG456700 Rh6BG444600 Rh6CG470600 Rh6DG457300
rosa_wichuraiana	Rw6G039840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	290
Acc16I	TGCGCA	1 cut(s)	1887
Acc36I	ACCTGC	1 cut(s)	1618
AccB1I	GGYRCC	1 cut(s)	1657
AccB7I	CCANNNNNTGG	2 cut(s)	256, 1391
AccII	CGCG	2 cut(s)	24, 1325
AciI	CCGC	7 cut(s)	429, 599, 1035, 1376, 1407, 1421, 1614
AclWI	GGATC	6 cut(s)	304, 614, 1007, 1032, 1095, 1417
AcoI	YGGCCR	1 cut(s)	2076
AcsI	RAATTY	4 cut(s)	7, 151, 564, 1240
AcuI	CTGAAG	3 cut(s)	786, 1784, 1898
AdeI	CACNNNGTG	1 cut(s)	1526
AfaI	GTAC	6 cut(s)	682, 702, 1105, 1322, 1583, 1954
AflIII	ACRYGT	1 cut(s)	1137
AgsI	TTSAA	9 cut(s)	156, 164, 671, 818, 1048, 1229, 1247, 1589, 1676
AhlI	ACTAGT	2 cut(s)	853, 1559
AjnI	CCWGG	6 cut(s)	323, 381, 844, 1384, 1427, 1968
AleI	CACNNNNGTG	1 cut(s)	1502
Alw21I	GWGCWC	2 cut(s)	853, 1300
Alw26I	GTCTC	3 cut(s)	504, 1668, 2028
AlwI	GGATC	6 cut(s)	304, 614, 1007, 1032, 1095, 1417
AlwNI	CAGNNNCTG	1 cut(s)	1318
Ama87I	CYCGRG	1 cut(s)	536
AoxI	GGCC	6 cut(s)	57, 343, 426, 1679, 2003, 2076
ApoI	RAATTY	4 cut(s)	7, 151, 564, 1240
ArsI	GACNNNNNNTTYG	2 cut(s)	2012, 2044
Asp700I	GAANNNNTTC	1 cut(s)	732
AspLEI	GCGC	7 cut(s)	24, 26, 138, 1327, 1792, 1858, 1888
AsuHPI	GGTGA	4 cut(s)	16, 1044, 1374, 1389
AvaI	CYCGRG	1 cut(s)	536
AvaII	GGWCC	7 cut(s)	47, 839, 869, 971, 1337, 1544, 1753
BaeGI	GKGCMC	1 cut(s)	1162
BaeI	ACNNNNGTAYC	2 cut(s)	1095, 1128
BanI	GGYRCC	1 cut(s)	1657
BanII	GRGCYC	1 cut(s)	537
BauI	CACGAG	1 cut(s)	28
BbsI	GAAGAC	1 cut(s)	767
Bbv12I	GWGCWC	2 cut(s)	853, 1300
BccI	CCATC	6 cut(s)	250, 902, 1015, 1445, 1542, 1690
BceAI	ACGGC	1 cut(s)	2091
BcgI	CGANNNNNNTGC	2 cut(s)	19, 53
BciT130I	CCWGG	6 cut(s)	325, 383, 846, 1386, 1429, 1970
BciVI	GTATCC	1 cut(s)	1123
BclI	TGATCA	1 cut(s)	1768
BcoDI	GTCTC	3 cut(s)	504, 1668, 2028
BcuI	ACTAGT	2 cut(s)	853, 1559
BfaI	CTAG	5 cut(s)	749, 779, 854, 1560, 1998
BfmI	CTRYAG	2 cut(s)	528, 1569
BfoI	RGCGCY	1 cut(s)	139
BfuAI	ACCTGC	1 cut(s)	1618
BfuI	GTATCC	1 cut(s)	1123
BglII	AGATCT	3 cut(s)	419, 499, 914
BmcAI	AGTACT	1 cut(s)	1105
Bme1390I	CCNGG	6 cut(s)	325, 383, 846, 1386, 1429, 1970
Bme18I	GGWCC	7 cut(s)	47, 839, 869, 971, 1337, 1544, 1753
BmeT110I	CYCGRG	1 cut(s)	536
BmiI	GGNNCC	5 cut(s)	1339, 1545, 1659, 1755, 1974
BmrFI	CCNGG	6 cut(s)	325, 383, 846, 1386, 1429, 1970
BmrI	ACTGGG	1 cut(s)	1454
BmsI	GCATC	1 cut(s)	1914
BmuI	ACTGGG	1 cut(s)	1454
BoxI	GACNNNNGTC	1 cut(s)	1007
BpiI	GAAGAC	1 cut(s)	767
BpmI	CTGGAG	4 cut(s)	420, 867, 1820, 1850
Bpu10I	CCTNAGC	2 cut(s)	519, 641
BpuEI	CTTGAG	2 cut(s)	1485, 1698
Bsa29I	ATCGAT	1 cut(s)	618
BsaBI	GATNNNNATC	1 cut(s)	308
BsaI	GGTCTC	1 cut(s)	2028
BsaJI	CCNNGG	5 cut(s)	139, 831, 1427, 1428, 2073
BsaWI	WCCGGW	1 cut(s)	820
Bse118I	RCCGGY	1 cut(s)	2078
Bse1I	ACTGG	8 cut(s)	812, 889, 973, 1074, 1082, 1206, 1460, 2092
Bse3DI	GCAATG	1 cut(s)	795
Bse8I	GATNNNNATC	1 cut(s)	308
BseBI	CCWGG	6 cut(s)	325, 383, 846, 1386, 1429, 1970
BseCI	ATCGAT	1 cut(s)	618
BseDI	CCNNGG	5 cut(s)	139, 831, 1427, 1428, 2073
BseGI	GGATG	4 cut(s)	118, 595, 730, 1534
BseJI	GATNNNNATC	1 cut(s)	308
BseMI	GCAATG	1 cut(s)	795
BseMII	CTCAG	4 cut(s)	414, 510, 1316, 1451
BseNI	ACTGG	8 cut(s)	812, 889, 973, 1074, 1082, 1206, 1460, 2092
BsePI	GCGCGC	1 cut(s)	22
BseRI	GAGGAG	2 cut(s)	236, 1176
BseSI	GKGCMC	1 cut(s)	1162
BseX3I	CGGCCG	1 cut(s)	2076
BsgI	GTGCAG	2 cut(s)	473, 1011
Bsh1236I	CGCG	2 cut(s)	24, 1325
Bsh1285I	CGRYCG	1 cut(s)	2079
BshFI	GGCC	6 cut(s)	59, 345, 428, 1681, 2005, 2078
BshNI	GGYRCC	1 cut(s)	1657
BshVI	ATCGAT	1 cut(s)	618
BsiEI	CGRYCG	1 cut(s)	2079
BsiHKAI	GWGCWC	2 cut(s)	853, 1300
BsiHKCI	CYCGRG	1 cut(s)	536
BsiSI	CCGG	3 cut(s)	281, 821, 2079
BslFI	GGGAC	4 cut(s)	1268, 1323, 1557, 1739
BsmAI	GTCTC	3 cut(s)	504, 1668, 2028
BsmBI	CGTCTC	1 cut(s)	1668
BsmFI	GGGAC	4 cut(s)	1268, 1323, 1557, 1739
BsmI	GAATGC	1 cut(s)	577
BsnI	GGCC	6 cut(s)	59, 345, 428, 1681, 2005, 2078
Bso31I	GGTCTC	1 cut(s)	2028
BsoBI	CYCGRG	1 cut(s)	536
Bsp1286I	GDGCHC	4 cut(s)	537, 853, 1162, 1300
Bsp1407I	TGTACA	1 cut(s)	1581
BspACI	CCGC	7 cut(s)	429, 599, 1035, 1376, 1407, 1421, 1614
BspANI	GGCC	6 cut(s)	59, 345, 428, 1681, 2005, 2078
BspCNI	CTCAG	4 cut(s)	415, 511, 1315, 1450
BspDI	ATCGAT	1 cut(s)	618
BspFNI	CGCG	2 cut(s)	24, 1325
BspLI	GGNNCC	5 cut(s)	1339, 1545, 1659, 1755, 1974
BspMAI	CTGCAG	1 cut(s)	532
BspMI	ACCTGC	1 cut(s)	1618
BspPI	GGATC	6 cut(s)	304, 614, 1007, 1032, 1095, 1417
BspT107I	GGYRCC	1 cut(s)	1657
BspTNI	GGTCTC	1 cut(s)	2028
BsrDI	GCAATG	1 cut(s)	795
BsrFI	RCCGGY	1 cut(s)	2078
BsrGI	TGTACA	1 cut(s)	1581
BsrI	ACTGG	8 cut(s)	812, 889, 973, 1074, 1082, 1206, 1460, 2092
BssAI	RCCGGY	1 cut(s)	2078
BssECI	CCNNGG	5 cut(s)	139, 831, 1427, 1428, 2073
BssHII	GCGCGC	1 cut(s)	22
BssSI	CACGAG	1 cut(s)	28
BssT1I	CCWWGG	2 cut(s)	139, 831
Bst2BI	CACGAG	1 cut(s)	28
Bst2UI	CCWGG	6 cut(s)	325, 383, 846, 1386, 1429, 1970
Bst4CI	ACNGT	7 cut(s)	183, 675, 1151, 1157, 1320, 1554, 1662
BstAPI	GCANNNNNTGC	1 cut(s)	1924
BstAUI	TGTACA	1 cut(s)	1581
BstC8I	GCNNGC	7 cut(s)	24, 105, 396, 937, 2003, 2007, 2080
BstDEI	CTNAG	7 cut(s)	423, 519, 608, 641, 1031, 1302, 1437
BstDSI	CCRYGG	1 cut(s)	2073
BstENI	CCTNNNNNAGG	1 cut(s)	1383
BstF5I	GGATG	4 cut(s)	118, 595, 730, 1534
BstFNI	CGCG	2 cut(s)	24, 1325
BstH2I	RGCGCY	1 cut(s)	139
BstHHI	GCGC	7 cut(s)	24, 26, 138, 1327, 1792, 1858, 1888
BstMAI	GTCTC	3 cut(s)	504, 1668, 2028
BstMCI	CGRYCG	1 cut(s)	2079
BstNI	CCWGG	6 cut(s)	325, 383, 846, 1386, 1429, 1970
BstNSI	RCATGY	6 cut(s)	40, 230, 1141, 1520, 1886, 2098
BstPAI	GACNNNNGTC	1 cut(s)	1007
BstSCI	CCNGG	6 cut(s)	323, 381, 844, 1384, 1427, 1968
BstSFI	CTRYAG	2 cut(s)	528, 1569
BstSLI	GKGCMC	1 cut(s)	1162
BstUI	CGCG	2 cut(s)	24, 1325
BstV2I	GAAGAC	1 cut(s)	767
BstX2I	RGATCY	4 cut(s)	419, 499, 914, 1024
BstYI	RGATCY	4 cut(s)	419, 499, 914, 1024
BstZI	CGGCCG	1 cut(s)	2076
Bsu15I	ATCGAT	1 cut(s)	618
BsuI	GTATCC	1 cut(s)	1123
BsuRI	GGCC	6 cut(s)	59, 345, 428, 1681, 2005, 2078
BsuTUI	ATCGAT	1 cut(s)	618
BtgI	CCRYGG	1 cut(s)	2073
BtsCI	GGATG	4 cut(s)	118, 595, 730, 1534
BtsIMutI	CAGTG	8 cut(s)	179, 680, 752, 882, 1067, 1089, 1162, 1316
BveI	ACCTGC	1 cut(s)	1618
Cac8I	GCNNGC	7 cut(s)	24, 105, 396, 937, 2003, 2007, 2080
CaiI	CAGNNNCTG	1 cut(s)	1318
CfoI	GCGC	7 cut(s)	24, 26, 138, 1327, 1792, 1858, 1888
Cfr10I	RCCGGY	1 cut(s)	2078
ClaI	ATCGAT	1 cut(s)	618
CseI	GACGC	1 cut(s)	466
Csp6I	GTAC	6 cut(s)	681, 701, 1104, 1321, 1582, 1953
CviQI	GTAC	6 cut(s)	681, 701, 1104, 1321, 1582, 1953
DdeI	CTNAG	7 cut(s)	423, 519, 608, 641, 1031, 1302, 1437
DraI	TTTAAA	1 cut(s)	1215
DraIII	CACNNNGTG	1 cut(s)	1526
DrdI	GACNNNNNNGTC	1 cut(s)	290
DseDI	GACNNNNNNGTC	1 cut(s)	290
EaeI	YGGCCR	1 cut(s)	2076
EagI	CGGCCG	1 cut(s)	2076
EciI	GGCGGA	1 cut(s)	614
EclXI	CGGCCG	1 cut(s)	2076
Eco130I	CCWWGG	2 cut(s)	139, 831
Eco24I	GRGCYC	1 cut(s)	537
Eco31I	GGTCTC	1 cut(s)	2028
Eco32I	GATATC	1 cut(s)	359
Eco47I	GGWCC	7 cut(s)	47, 839, 869, 971, 1337, 1544, 1753
Eco52I	CGGCCG	1 cut(s)	2076
Eco57I	CTGAAG	3 cut(s)	786, 1784, 1898
Eco88I	CYCGRG	1 cut(s)	536
EcoNI	CCTNNNNNAGG	1 cut(s)	1383
EcoO109I	RGGNCCY	1 cut(s)	1544
EcoRI	GAATTC	2 cut(s)	7, 151
EcoRII	CCWGG	6 cut(s)	323, 381, 844, 1384, 1427, 1968
EcoRV	GATATC	1 cut(s)	359
EcoT14I	CCWWGG	2 cut(s)	139, 831
EcoT22I	ATGCAT	2 cut(s)	228, 1929
EcoT38I	GRGCYC	1 cut(s)	537
ErhI	CCWWGG	2 cut(s)	139, 831
Esp3I	CGTCTC	1 cut(s)	1668
FalI	AAGNNNNNCTT	4 cut(s)	150, 182, 624, 656
FaqI	GGGAC	4 cut(s)	1268, 1323, 1557, 1739
FauNDI	CATATG	3 cut(s)	83, 222, 1477
FbaI	TGATCA	1 cut(s)	1768
FokI	GGATG	4 cut(s)	125, 602, 737, 1521
FriOI	GRGCYC	1 cut(s)	537
FspBI	CTAG	5 cut(s)	749, 779, 854, 1560, 1998
FspI	TGCGCA	1 cut(s)	1887
GlaI	GCGC	7 cut(s)	23, 25, 137, 1326, 1791, 1857, 1887
GsuI	CTGGAG	4 cut(s)	420, 867, 1820, 1850
HaeII	RGCGCY	1 cut(s)	139
HaeIII	GGCC	6 cut(s)	59, 345, 428, 1681, 2005, 2078
HapII	CCGG	3 cut(s)	281, 821, 2079
HgaI	GACGC	1 cut(s)	466
HhaI	GCGC	7 cut(s)	24, 26, 138, 1327, 1792, 1858, 1888
Hin6I	GCGC	7 cut(s)	22, 24, 136, 1325, 1790, 1856, 1886
HinP1I	GCGC	7 cut(s)	22, 24, 136, 1325, 1790, 1856, 1886
HincII	GTYRAC	3 cut(s)	712, 1557, 2044
HindII	GTYRAC	3 cut(s)	712, 1557, 2044
HindIII	AAGCTT	2 cut(s)	333, 553
HinfI	GANTC	2 cut(s)	728, 1064
HpaI	GTTAAC	1 cut(s)	712
HpaII	CCGG	3 cut(s)	281, 821, 2079
HphI	GGTGA	4 cut(s)	16, 1044, 1374, 1389
Hpy166II	GTNNAC	5 cut(s)	703, 712, 1397, 1557, 2044
Hpy188I	TCNGA	6 cut(s)	424, 507, 570, 724, 1147, 1356
Hpy188III	TCNNGA	4 cut(s)	50, 313, 497, 623
Hpy8I	GTNNAC	5 cut(s)	703, 712, 1397, 1557, 2044
HpyAV	CCTTC	4 cut(s)	534, 1051, 1389, 1808
HpyCH4III	ACNGT	7 cut(s)	183, 675, 1151, 1157, 1320, 1554, 1662
HpyCH4IV	ACGT	1 cut(s)	772
HpyF3I	CTNAG	7 cut(s)	423, 519, 608, 641, 1031, 1302, 1437
HpySE526I	ACGT	1 cut(s)	772
HspAI	GCGC	7 cut(s)	22, 24, 136, 1325, 1790, 1856, 1886
KroI	GCCGGC	1 cut(s)	2078
KroNI	GCCGGC	1 cut(s)	2080
Ksp22I	TGATCA	1 cut(s)	1768
KspAI	GTTAAC	1 cut(s)	712
LmnI	GCTCC	9 cut(s)	19, 401, 439, 848, 1000, 1255, 1295, 1639, 1978
LweI	GCATC	1 cut(s)	1914
MaeI	CTAG	5 cut(s)	749, 779, 854, 1560, 1998
MaeII	ACGT	1 cut(s)	772
MaeIII	GTNAC	7 cut(s)	1151, 1314, 1462, 1495, 1510, 1562, 1601
MboII	GAAGA	6 cut(s)	286, 313, 494, 767, 1019, 1904
MflI	RGATCY	4 cut(s)	419, 499, 914, 1024
MhlI	GDGCHC	4 cut(s)	537, 853, 1162, 1300
MluCI	AATT	9 cut(s)	7, 151, 202, 386, 564, 1180, 1223, 1240, 1593
MmeI	TCCRAC	2 cut(s)	165, 1001
Mph1103I	ATGCAT	2 cut(s)	228, 1929
MroNI	GCCGGC	1 cut(s)	2078
MroXI	GAANNNNTTC	1 cut(s)	732
MseI	TTAA	6 cut(s)	120, 551, 711, 951, 1214, 1941
MslI	CAYNNNNRTG	3 cut(s)	225, 736, 1502
MspA1I	CMGCKG	2 cut(s)	431, 1407
MspI	CCGG	3 cut(s)	281, 821, 2079
MspR9I	CCNGG	6 cut(s)	325, 383, 846, 1386, 1429, 1970
Mva1269I	GAATGC	1 cut(s)	577
MvaI	CCWGG	6 cut(s)	325, 383, 846, 1386, 1429, 1970
MvnI	CGCG	2 cut(s)	24, 1325
NaeI	GCCGGC	1 cut(s)	2080
NdeI	CATATG	3 cut(s)	83, 222, 1477
NgoMIV	GCCGGC	1 cut(s)	2078
NlaIV	GGNNCC	5 cut(s)	1339, 1545, 1659, 1755, 1974
NmuCI	GTSAC	4 cut(s)	1314, 1495, 1510, 1562
NsbI	TGCGCA	1 cut(s)	1887
NsiI	ATGCAT	2 cut(s)	228, 1929
NspI	RCATGY	6 cut(s)	40, 230, 1141, 1520, 1886, 2098
OliI	CACNNNNGTG	1 cut(s)	1502
PasI	CCCWGGG	1 cut(s)	1428
PauI	GCGCGC	1 cut(s)	22
PciI	ACATGT	1 cut(s)	1137
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PctI	GAATGC	1 cut(s)	577
PdiI	GCCGGC	1 cut(s)	2080
PdmI	GAANNNNTTC	1 cut(s)	732
PfeI	GAWTC	2 cut(s)	728, 1064
PflMI	CCANNNNNTGG	2 cut(s)	256, 1391
PfoI	TCCNGGA	1 cut(s)	844
PpuMI	RGGWCCY	1 cut(s)	1544
PscI	ACATGT	1 cut(s)	1137
PshAI	GACNNNNGTC	1 cut(s)	1007
Psp5II	RGGWCCY	1 cut(s)	1544
Psp6I	CCWGG	6 cut(s)	323, 381, 844, 1384, 1427, 1968
PspGI	CCWGG	6 cut(s)	323, 381, 844, 1384, 1427, 1968
PspN4I	GGNNCC	5 cut(s)	1339, 1545, 1659, 1755, 1974
PspPPI	RGGWCCY	1 cut(s)	1544
PstI	CTGCAG	1 cut(s)	532
PstNI	CAGNNNCTG	1 cut(s)	1318
PsuI	RGATCY	4 cut(s)	419, 499, 914, 1024
PteI	GCGCGC	1 cut(s)	22
RsaI	GTAC	6 cut(s)	682, 702, 1105, 1322, 1583, 1954
RsaNI	GTAC	6 cut(s)	681, 701, 1104, 1321, 1582, 1953
RseI	CAYNNNNRTG	3 cut(s)	225, 736, 1502
SaqAI	TTAA	6 cut(s)	120, 551, 711, 951, 1214, 1941
ScaI	AGTACT	1 cut(s)	1105
ScrFI	CCNGG	6 cut(s)	325, 383, 846, 1386, 1429, 1970
SduI	GDGCHC	4 cut(s)	537, 853, 1162, 1300
SfaNI	GCATC	1 cut(s)	1914
SfcI	CTRYAG	2 cut(s)	528, 1569
SinI	GGWCC	7 cut(s)	47, 839, 869, 971, 1337, 1544, 1753
SmiMI	CAYNNNNRTG	3 cut(s)	225, 736, 1502
SmlI	CTYRAG	2 cut(s)	1500, 1713
SmoI	CTYRAG	2 cut(s)	1500, 1713
SpeI	ACTAGT	2 cut(s)	853, 1559
Sse9I	AATT	9 cut(s)	7, 151, 202, 386, 564, 1180, 1223, 1240, 1593
SsiI	CCGC	7 cut(s)	429, 599, 1035, 1376, 1407, 1421, 1614
SspMI	CTAG	5 cut(s)	749, 779, 854, 1560, 1998
StyD4I	CCNGG	6 cut(s)	323, 381, 844, 1384, 1427, 1968
StyI	CCWWGG	2 cut(s)	139, 831
TaaI	ACNGT	7 cut(s)	183, 675, 1151, 1157, 1320, 1554, 1662
TaiI	ACGT	1 cut(s)	775
TaqI	TCGA	6 cut(s)	69, 618, 716, 906, 923, 1011
TaqII	GACCGA	1 cut(s)	35
TasI	AATT	9 cut(s)	7, 151, 202, 386, 564, 1180, 1223, 1240, 1593
TatI	WGTACW	2 cut(s)	1103, 1581
TauI	GCSGC	2 cut(s)	431, 1378
TfiI	GAWTC	2 cut(s)	728, 1064
Tru1I	TTAA	6 cut(s)	120, 551, 711, 951, 1214, 1941
Tru9I	TTAA	6 cut(s)	120, 551, 711, 951, 1214, 1941
TscAI	CASTG	8 cut(s)	186, 680, 759, 889, 1074, 1089, 1162, 1323
TseFI	GTSAC	4 cut(s)	1314, 1495, 1510, 1562
Tsp45I	GTSAC	4 cut(s)	1314, 1495, 1510, 1562
TspDTI	ATGAA	3 cut(s)	77, 741, 804
TspRI	CASTG	8 cut(s)	186, 680, 759, 889, 1074, 1089, 1162, 1323
Van91I	CCANNNNNTGG	2 cut(s)	256, 1391
VpaK11BI	GGWCC	7 cut(s)	47, 839, 869, 971, 1337, 1544, 1753
XagI	CCTNNNNNAGG	1 cut(s)	1383
XapI	RAATTY	4 cut(s)	7, 151, 564, 1240
XceI	RCATGY	6 cut(s)	40, 230, 1141, 1520, 1886, 2098
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1425
XmnI	GAANNNNTTC	1 cut(s)	732
XspI	CTAG	5 cut(s)	749, 779, 854, 1560, 1998
ZrmI	AGTACT	1 cut(s)	1105
Zsp2I	ATGCAT	2 cut(s)	228, 1929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.