Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007349

Physical Location & Seq

Genomic Coordinates Forward (+)

49588290 .. 49588989

Gene Structure 700 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0344900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGAAAAAGCCTGAATTCTTCAGTCAACTTGTGGGTGAGGTCAAAGAAATGGGATTTGACCCTCAAAGGTCGAGCTTTGTGCAGGCCATGCATGCATTATCTGGAAAAGAGACGACATGGAAACTCTGTCAAGAGGCTTATAGGAGGTGGGGTTGGTCTGACGAGGATATTCTTGATGCCTTCAGGTCGCATCCGCTGTGTATGATGAAGTCAGGGAAGAAAATAATGGAAACAATGGATTTCTTAGTGAACAAGATGGGGTGGCAGTCACATAAGATTGCAAGGTCTTCCAGGGTTTTGGGTTACAGCTTGGAGAAGAGAATCATCCCAAGGTGTTCCGTTGTTAGAATTTTGTTGTTGAAAGGATTGATGAAAGAGGAAGAGTTGAATATGAATACTATTACTACTCCTTCAGAGAAATACTTCTTGACTAAGTTTGTGAGCAGATATCTCAACCAAGTACCTCAATTGTTGAATGTGTACCAAGGGAAAGTGGATTTTCAGGATGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006464 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0019899 GO:0030258 GO:0031625 GO:0032446 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042886 GO:0043170 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044389 GO:0044424 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0061630 GO:0061659 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0140096 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAT VHS

Protein Analysis

170

Amino Acids

19.91

Weight (kDa)

9.36

Isoelectric Point (pI)

48.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	37 - 142	5.8e-14	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32760 AT4G32760 AT4G32760
fragaria_vesca	FvH4_2g35970 FvH4_2g35970 FvH4_2g35970 FvH4_2g35970 FvH4_2g35970
malus_domestica	MD08G1116900.v1.1 MD15G1096400.v1.1
prunus_persica	Prupe.1G451300_v2.0.a1 Prupe.1G451300_v2.0.a1
pyrus_communis	pycom08g09740 pycom15g08850
rosa_chinensis	RchiOBHm_Chr6g0305901
rosa_laevigata	RLG00000010848
rosa_multiflora	Rmu_sc0001809.1_g000047
rosa_roxburghii	Rroxscaffold_7G00162230
rosa_rugosa	Rorug06G0344900 Rorug06G0345000
rosa_samantha	Rh6AG456700 Rh6BG444600 Rh6CG470600 Rh6DG457300
rosa_wichuraiana	Rw6G039840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	194
AcsI	RAATTY	2 cut(s)	14, 348
AcuI	CTGAAG	3 cut(s)	4, 166, 396
AfaI	GTAC	2 cut(s)	462, 482
AgsI	TTSAA	3 cut(s)	361, 388, 475
AjnI	CCWGG	1 cut(s)	290
AluBI	AGCT	2 cut(s)	75, 309
AluI	AGCT	2 cut(s)	75, 309
Alw26I	GTCTC	1 cut(s)	104
AoxI	GGCC	1 cut(s)	84
ApoI	RAATTY	2 cut(s)	14, 348
Asp700I	GAANNNNTTC	1 cut(s)	422
AsuHPI	GGTGA	1 cut(s)	47
BbsI	GAAGAC	1 cut(s)	279
BccI	CCATC	1 cut(s)	250
BcgI	CGANNNNNNTGC	2 cut(s)	61, 95
BciT130I	CCWGG	1 cut(s)	292
BcoDI	GTCTC	1 cut(s)	104
Bme1390I	CCNGG	1 cut(s)	292
BmrFI	CCNGG	1 cut(s)	292
BmsI	GCATC	2 cut(s)	166, 199
BpiI	GAAGAC	1 cut(s)	279
BsaJI	CCNNGG	3 cut(s)	291, 329, 484
BsaXI	ACNNNNNCTCC	2 cut(s)	136, 166
BseBI	CCWGG	1 cut(s)	292
BseDI	CCNNGG	3 cut(s)	291, 329, 484
BseGI	GGATG	3 cut(s)	190, 324, 511
BsgI	GTGCAG	1 cut(s)	101
BshFI	GGCC	1 cut(s)	86
BsmAI	GTCTC	1 cut(s)	104
BsmBI	CGTCTC	1 cut(s)	104
BsnI	GGCC	1 cut(s)	86
BspACI	CCGC	1 cut(s)	194
BspANI	GGCC	1 cut(s)	86
BssECI	CCNNGG	3 cut(s)	291, 329, 484
BssT1I	CCWWGG	2 cut(s)	329, 484
Bst2UI	CCWGG	1 cut(s)	292
Bst6I	CTCTTC	2 cut(s)	311, 375
BstAPI	GCANNNNNTGC	1 cut(s)	88
BstC8I	GCNNGC	2 cut(s)	84, 93
BstDEI	CTNAG	2 cut(s)	244, 432
BstF5I	GGATG	3 cut(s)	190, 324, 511
BstMAI	GTCTC	1 cut(s)	104
BstMWI	GCNNNNNNNGC	2 cut(s)	88, 92
BstNI	CCWGG	1 cut(s)	292
BstNSI	RCATGY	1 cut(s)	95
BstSCI	CCNGG	1 cut(s)	290
BstV2I	GAAGAC	1 cut(s)	279
BstXI	CCANNNNNNTGG	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	86
BtsCI	GGATG	3 cut(s)	190, 324, 511
Cac8I	GCNNGC	2 cut(s)	84, 93
Csp6I	GTAC	2 cut(s)	461, 481
CviAII	CATG	3 cut(s)	88, 92, 117
CviJI	RGCY	5 cut(s)	10, 75, 86, 137, 309
CviKI_1	RGCY	5 cut(s)	10, 75, 86, 137, 309
CviQI	GTAC	2 cut(s)	461, 481
DdeI	CTNAG	2 cut(s)	244, 432
Eam1104I	CTCTTC	2 cut(s)	311, 375
EarI	CTCTTC	2 cut(s)	311, 375
Eco130I	CCWWGG	2 cut(s)	329, 484
Eco32I	GATATC	1 cut(s)	449
Eco57I	CTGAAG	3 cut(s)	4, 166, 396
EcoRI	GAATTC	1 cut(s)	14
EcoRII	CCWGG	1 cut(s)	290
EcoRV	GATATC	1 cut(s)	449
EcoT14I	CCWWGG	2 cut(s)	329, 484
EcoT22I	ATGCAT	2 cut(s)	93, 97
ErhI	CCWWGG	2 cut(s)	329, 484
Esp3I	CGTCTC	1 cut(s)	104
FaeI	CATG	3 cut(s)	91, 95, 120
FaiI	YATR	8 cut(s)	89, 93, 118, 141, 203, 273, 392, 511
FatI	CATG	3 cut(s)	87, 91, 116
FokI	GGATG	2 cut(s)	177, 311
HaeIII	GGCC	1 cut(s)	86
Hin1II	CATG	3 cut(s)	91, 95, 120
HincII	GTYRAC	1 cut(s)	26
HindII	GTYRAC	1 cut(s)	26
HinfI	GANTC	1 cut(s)	321
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	3 cut(s)	26, 250, 481
Hpy188I	TCNGA	2 cut(s)	160, 415
Hpy188III	TCNNGA	5 cut(s)	102, 131, 173, 427, 503
Hpy8I	GTNNAC	3 cut(s)	26, 250, 481
HpyAV	CCTTC	2 cut(s)	190, 420
HpyCH4V	TGCA	4 cut(s)	82, 91, 95, 281
HpyF10VI	GCNNNNNNNGC	2 cut(s)	88, 92
HpyF3I	CTNAG	2 cut(s)	244, 432
Hsp92II	CATG	3 cut(s)	91, 95, 120
LpnPI	CCDG	8 cut(s)	24, 68, 87, 169, 198, 277, 304, 488
LweI	GCATC	2 cut(s)	166, 199
MaeIII	GTNAC	2 cut(s)	267, 302
MboII	GAAGA	5 cut(s)	10, 229, 279, 328, 392
MfeI	CAATTG	1 cut(s)	467
MluCI	AATT	3 cut(s)	14, 348, 467
MnlI	CCTC	7 cut(s)	31, 72, 127, 138, 157, 370, 474
Mph1103I	ATGCAT	2 cut(s)	93, 97
MroXI	GAANNNNTTC	1 cut(s)	422
MspA1I	CMGCKG	1 cut(s)	196
MspR9I	CCNGG	1 cut(s)	292
MunI	CAATTG	1 cut(s)	467
MvaI	CCWGG	1 cut(s)	292
MwoI	GCNNNNNNNGC	2 cut(s)	88, 92
NlaIII	CATG	3 cut(s)	91, 95, 120
NmuCI	GTSAC	1 cut(s)	267
NsiI	ATGCAT	2 cut(s)	93, 97
NspI	RCATGY	1 cut(s)	95
PaeI	GCATGC	1 cut(s)	95
PdmI	GAANNNNTTC	1 cut(s)	422
PfeI	GAWTC	1 cut(s)	321
Psp6I	CCWGG	1 cut(s)	290
PspGI	CCWGG	1 cut(s)	290
RsaI	GTAC	2 cut(s)	462, 482
RsaNI	GTAC	2 cut(s)	461, 481
ScrFI	CCNGG	1 cut(s)	292
SetI	ASST	9 cut(s)	42, 71, 77, 149, 188, 287, 311, 335, 466
SfaNI	GCATC	2 cut(s)	166, 199
SphI	GCATGC	1 cut(s)	95
Sse9I	AATT	3 cut(s)	14, 348, 467
SsiI	CCGC	1 cut(s)	194
StyD4I	CCNGG	1 cut(s)	290
StyI	CCWWGG	2 cut(s)	329, 484
TaqI	TCGA	1 cut(s)	71
TasI	AATT	3 cut(s)	14, 348, 467
TfiI	GAWTC	1 cut(s)	321
TseFI	GTSAC	1 cut(s)	267
Tsp45I	GTSAC	1 cut(s)	267
TspDTI	ATGAA	4 cut(s)	17, 221, 386, 407
TspGWI	ACGGA	1 cut(s)	328
XapI	RAATTY	2 cut(s)	14, 348
XceI	RCATGY	1 cut(s)	95
XmnI	GAANNNNTTC	1 cut(s)	422
Zsp2I	ATGCAT	2 cut(s)	93, 97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.