Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0007349

Physical Location & Seq

Genomic Coordinates Reverse (-)

4835581 .. 4844606

Gene Structure 9026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00162230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2400 bp

ATGGTGGAGCGCGCCACGAGCGACATGCTCATCGGTCCTGATTGGGCCATGAACATCGAAATCTGCGACATATGCAACCACGACCCTGTGCAAGCAAAGGATGTTGTTAAAGGTATAAAGAAGCGCCTTGGAAGTAGGAATTCAAAAGTTCAACTTCTTGCCCTTACACTGTTGGAAACAATAATAAAGAATTGTGGAGATATTGTGCATATGCATGTAGCAGAGAAAGACCTCCTCCATGAGATGGTAAAAATAGTAAAGAAGAAGCCGGACTATCATGTCAAAGAGAAGATATTGATCCTGATAGATACCTGGCAAGAAGCTTTCGGTGGCCCAAGAGCAAGATACCCACAATACTATGCTGCATACCAGGAATTGTTGCGTGCTGGAGCAGTATTCCCCCACAGATCTGAGGCCGCTGCTCCTGTATTCACACCTCCCCAGACGCAACCATTGTCATCACTCCCTCCAAATCTGCACAATCCAGATCTTCCGAGAGACATACCTGAGCCTTCTGCAGAGCCCGAGTTCCCAACATTAAGCTTGACTGAAATTCAGAATGCACGGGGTATTATGGATGTCTTGGCAGAAATGCTAAGTGCTATCGATCCAGAGAACAAAGAGTCTGCTGCTACAAATGTTCAAAATAGTAGTCCTGGTACAGTAGAATATATTATATCTTTCCAGACTAACCCTACTTGGCTGAATCTATTTGGATCTATATTTCATCGGGGGCTTAGGCAGGAGGTTATTGTTGATTTGGTTGAACAGTGTCGGACATATAAGCAGAGGGTGGTACACCTTGTTAACTCGACTTCGGATGAATCACTGCTATGTCAAGGACTAGCACTGAATGATGACTTGCAACGTCTTCTAGCCAAACATGAAGCCATTGCTTCAGGCAATCCAGTTCAACCGGATAAACCCAAGGCTGGACCTCCTGGAGCACTTGTAGATGTTGGTGGTCCTCTTATTGACACTGGAAATGATAACAAACAGCTTGATGGGAGATCCACTTCGAGTGCTGGTGCAAGCTCTAATCCACTTAATCAGTTATTACTTACTGGACCTCCAACTACTAATGGTGCAGCTCCTGCGGCAAAGGTCGATCCCAAGATGGATCTTCTTAGCGGAGATGACTTCAACTCACCGAAGGCAGATTCACTGGCTCTTGTTCCTGTGGATCAACAGCCAAGTAGTACTCCTGTATCCAATGCCCTTGTTCTTATGGACATGTTTTCTGACGGTAACAGTGCCCCGAATCCTGTAAATACCAATTCTCCTCATGCAGCCAACCAAACCAGTCCTTTAAACCCACAATTTCAACAGCAGCGGAATTTTCAAGCTCCACAAGGGGGAGTTCTCCCAAATGGAAGTGTCCCAAACATGGGAGCACCTCAGTATGAGCAGTCACTGTACGCACAAGGGGTGGTCCCACTTGGAATGGTCAGATTATGCAGCAGCAGCAGCCGCCTTCACCAGGATATGGTGCACATTTTAATAGATTTTAGGCGTTTGGATCTCATTGTTGTGTGCTGTTCACCAACCAGTGGATCATTACCACCGCCTCCCTGGGAAGCTCAGTCAGCAGATGATGGAAGCCCAGTAACAGGTTCTCCATATGCACCACCAATGCAAGTCACTCAGGTGGTTGTCACACATGCACAGGGTGGTTTCCATCCACAGGGACCTCAACGGTCAACTAGTGACCCTGTAGTTGGTATGTACATTCAACCAATTACAAGTAACCATTTGTCCGCAATCAATCAGCAGGTTGCTCCAAGCAGTCAGTTGGGTTTGGCACTGTCTCAACCACTTCAAGGGCCATCTATGGAACTATCAGAACCTGTTCAGGATATTGGGATTTGCGGTGTAGTGCTGTATTCTAAGCTTCGCAATCAGAAATTAAGATGCAGCACTAGGTTTGTGCAGGCATCAAGAGCTAGGCTTTTCAAGGAATACAAAGAGGTTCAACGAGAGAAAGTTGCAGATCCAGATATTCAATTAGTTTGTGATGACTCCAACATATTTAAATGGACGGCTCTCATCAAGGGACCATCGGAGACTCCATTTGAGGGTGGCATATTCCAGCTTGCTTTTGCAGTTCCTGAGCAGTATCCACTGCAACCCCCACAAGTCAGGTTCTTGACAAAAATTTTCCATCCAAACGTGCATTTTAAGACAGGAGAGATATGCCTTGACATCTTGAAGAATGCATGGAGCCCTGCTTGGACACTTCAGTCTGTTTGTAGGGCTATAATTGCTTTAATGGCCCATCCAGAACCCGATAGCCCACTGAACTGTGATTCAGGCAATCTTCTGCGTGCTGGCGATATTAAGGGGTACCATTCCATGGCAAGAATGTACACTAGGCTTGCCGCCATGCCCAAGAAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006464 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0019899 GO:0030258 GO:0031625 GO:0032446 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042886 GO:0043170 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044389 GO:0044424 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0061630 GO:0061659 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0140096 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAT VHS

Protein Analysis

799

Amino Acids

87.03

Weight (kDa)

6.0

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VHS	PF00790	2 - 124	2.7e-31	VHS domain
GAT	PF03127	246 - 301	3.4e-12	GAT domain
UQ_con	PF00179	649 - 787	1.8e-41	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32760 AT4G32760 AT4G32760
fragaria_vesca	FvH4_2g35970 FvH4_2g35970 FvH4_2g35970 FvH4_2g35970 FvH4_2g35970
malus_domestica	MD08G1116900.v1.1 MD15G1096400.v1.1
prunus_persica	Prupe.1G451300_v2.0.a1 Prupe.1G451300_v2.0.a1
pyrus_communis	pycom08g09740 pycom15g08850
rosa_chinensis	RchiOBHm_Chr6g0305901
rosa_laevigata	RLG00000010848
rosa_multiflora	Rmu_sc0001809.1_g000047
rosa_roxburghii	Rroxscaffold_7G00162230
rosa_rugosa	Rorug06G0344900 Rorug06G0345000
rosa_samantha	Rh6AG456700 Rh6BG444600 Rh6CG470600 Rh6DG457300
rosa_wichuraiana	Rw6G039840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	278, 2239
Acc36I	ACCTGC	1 cut(s)	1762
Acc65I	GGTACC	1 cut(s)	2343
AccB1I	GGYRCC	1 cut(s)	2343
AccB7I	CCANNNNNTGG	4 cut(s)	244, 1486, 1550, 2353
AccII	CGCG	1 cut(s)	12
AciI	CCGC	9 cut(s)	417, 1097, 1131, 1333, 1471, 1565, 1758, 1869, 2379
AcsI	RAATTY	4 cut(s)	139, 552, 1336, 2154
AcuI	CTGAAG	2 cut(s)	882, 2222
AdeI	CACNNNGTG	1 cut(s)	1670
AfaI	GTAC	7 cut(s)	661, 798, 1201, 1418, 1727, 2345, 2366
AflIII	ACRYGT	1 cut(s)	1233
AhlI	ACTAGT	1 cut(s)	1703
AjnI	CCWGG	6 cut(s)	311, 369, 655, 940, 1479, 1571
AleI	CACNNNNGTG	1 cut(s)	1646
Alw21I	GWGCWC	3 cut(s)	949, 1396, 1494
Alw26I	GTCTC	3 cut(s)	492, 1812, 2057
Alw44I	GTGCAC	1 cut(s)	1490
AlwNI	CAGNNNCTG	4 cut(s)	1094, 1414, 1847, 2108
Ama87I	CYCGRG	1 cut(s)	524
AoxI	GGCC	5 cut(s)	45, 331, 414, 1823, 2271
ApaLI	GTGCAC	1 cut(s)	1490
ApoI	RAATTY	4 cut(s)	139, 552, 1336, 2154
ArsI	GACNNNNNNTTYG	2 cut(s)	637, 669
Asp700I	GAANNNNTTC	1 cut(s)	1848
Asp718I	GGTACC	1 cut(s)	2343
AspLEI	GCGC	3 cut(s)	12, 14, 126
AsuHPI	GGTGA	3 cut(s)	1140, 1469, 1533
AvaI	CYCGRG	1 cut(s)	524
AvaII	GGWCC	7 cut(s)	35, 935, 965, 1067, 1432, 1688, 2054
BaeGI	GKGCMC	2 cut(s)	1258, 1494
BaeI	ACNNNNGTAYC	2 cut(s)	1191, 1224
BanI	GGYRCC	1 cut(s)	2343
BanII	GRGCYC	2 cut(s)	525, 2225
BauI	CACGAG	1 cut(s)	16
BbsI	GAAGAC	1 cut(s)	863
Bbv12I	GWGCWC	3 cut(s)	949, 1396, 1494
BccI	CCATC	9 cut(s)	238, 998, 1111, 1589, 1686, 1834, 2065, 2169, 2283
BceAI	ACGGC	1 cut(s)	2055
BcgI	CGANNNNNNTGC	2 cut(s)	7, 41
BciT130I	CCWGG	6 cut(s)	313, 371, 657, 942, 1481, 1573
BciVI	GTATCC	2 cut(s)	1219, 2127
BcoDI	GTCTC	3 cut(s)	492, 1812, 2057
BcuI	ACTAGT	1 cut(s)	1703
BfaI	CTAG	6 cut(s)	845, 875, 1704, 1920, 1944, 2370
BfmI	CTRYAG	2 cut(s)	516, 1713
BfoI	RGCGCY	1 cut(s)	127
BfuAI	ACCTGC	1 cut(s)	1762
BfuI	GTATCC	2 cut(s)	1219, 2127
BglII	AGATCT	2 cut(s)	407, 487
BmcAI	AGTACT	1 cut(s)	1201
Bme1390I	CCNGG	6 cut(s)	313, 371, 657, 942, 1481, 1573
Bme18I	GGWCC	7 cut(s)	35, 935, 965, 1067, 1432, 1688, 2054
BmeT110I	CYCGRG	1 cut(s)	524
BmiI	GGNNCC	5 cut(s)	1434, 1689, 2055, 2222, 2345
BmrFI	CCNGG	6 cut(s)	313, 371, 657, 942, 1481, 1573
BmrI	ACTGGG	1 cut(s)	1598
BmsI	GCATC	2 cut(s)	1901, 1943
BmuI	ACTGGG	1 cut(s)	1598
BpiI	GAAGAC	1 cut(s)	863
BpmI	CTGGAG	2 cut(s)	408, 963
Bpu10I	CCTNAGC	3 cut(s)	507, 737, 2109
Bsa29I	ATCGAT	1 cut(s)	606
BsaBI	GATNNNNATC	1 cut(s)	296
BsaJI	CCNNGG	5 cut(s)	127, 927, 1571, 1572, 2352
BsaWI	WCCGGW	1 cut(s)	916
Bse1I	ACTGG	7 cut(s)	908, 985, 1069, 1170, 1302, 1548, 1604
Bse3DI	GCAATG	1 cut(s)	891
Bse8I	GATNNNNATC	1 cut(s)	296
BseBI	CCWGG	6 cut(s)	313, 371, 657, 942, 1481, 1573
BseCI	ATCGAT	1 cut(s)	606
BseDI	CCNNGG	5 cut(s)	127, 927, 1571, 1572, 2352
BseGI	GGATG	6 cut(s)	106, 583, 826, 1678, 2161, 2275
BseJI	GATNNNNATC	1 cut(s)	296
BseMI	GCAATG	1 cut(s)	891
BseMII	CTCAG	6 cut(s)	402, 498, 1412, 1595, 1658, 2100
BseNI	ACTGG	7 cut(s)	908, 985, 1069, 1170, 1302, 1548, 1604
BsePI	GCGCGC	1 cut(s)	10
BseRI	GAGGAG	2 cut(s)	224, 1272
BseSI	GKGCMC	2 cut(s)	1258, 1494
BsgI	GTGCAG	3 cut(s)	461, 1107, 1949
Bsh1236I	CGCG	1 cut(s)	12
BshFI	GGCC	5 cut(s)	47, 333, 416, 1825, 2273
BshNI	GGYRCC	1 cut(s)	2343
BshVI	ATCGAT	1 cut(s)	606
BsiHKAI	GWGCWC	3 cut(s)	949, 1396, 1494
BsiHKCI	CYCGRG	1 cut(s)	524
BsiSI	CCGG	2 cut(s)	269, 917
BslFI	GGGAC	4 cut(s)	1364, 1418, 1701, 2067
BsmAI	GTCTC	3 cut(s)	492, 1812, 2057
BsmFI	GGGAC	4 cut(s)	1364, 1418, 1701, 2067
BsmI	GAATGC	2 cut(s)	565, 2218
BsnI	GGCC	5 cut(s)	47, 333, 416, 1825, 2273
BsoBI	CYCGRG	1 cut(s)	524
Bsp1286I	GDGCHC	6 cut(s)	525, 949, 1258, 1396, 1494, 2225
Bsp1407I	TGTACA	2 cut(s)	1725, 2364
Bsp19I	CCATGG	1 cut(s)	2352
BspACI	CCGC	9 cut(s)	417, 1097, 1131, 1333, 1471, 1565, 1758, 1869, 2379
BspANI	GGCC	5 cut(s)	47, 333, 416, 1825, 2273
BspCNI	CTCAG	6 cut(s)	403, 499, 1411, 1594, 1657, 2101
BspDI	ATCGAT	1 cut(s)	606
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	5 cut(s)	1434, 1689, 2055, 2222, 2345
BspMAI	CTGCAG	1 cut(s)	520
BspMI	ACCTGC	1 cut(s)	1762
BspT107I	GGYRCC	1 cut(s)	2343
BsrDI	GCAATG	1 cut(s)	891
BsrGI	TGTACA	2 cut(s)	1725, 2364
BsrI	ACTGG	7 cut(s)	908, 985, 1069, 1170, 1302, 1548, 1604
BssECI	CCNNGG	5 cut(s)	127, 927, 1571, 1572, 2352
BssHII	GCGCGC	1 cut(s)	10
BssSI	CACGAG	1 cut(s)	16
BssT1I	CCWWGG	3 cut(s)	127, 927, 2352
Bst2BI	CACGAG	1 cut(s)	16
Bst2UI	CCWGG	6 cut(s)	313, 371, 657, 942, 1481, 1573
Bst4CI	ACNGT	9 cut(s)	171, 664, 771, 1247, 1253, 1416, 1698, 1806, 2303
BstAPI	GCANNNNNTGC	1 cut(s)	1094
BstAUI	TGTACA	2 cut(s)	1725, 2364
BstC8I	GCNNGC	9 cut(s)	12, 93, 384, 1033, 1932, 2094, 2325, 2329, 2376
BstDSI	CCRYGG	1 cut(s)	2352
BstENI	CCTNNNNNAGG	1 cut(s)	1478
BstF5I	GGATG	6 cut(s)	106, 583, 826, 1678, 2161, 2275
BstFNI	CGCG	1 cut(s)	12
BstH2I	RGCGCY	1 cut(s)	127
BstHHI	GCGC	3 cut(s)	12, 14, 126
BstMAI	GTCTC	3 cut(s)	492, 1812, 2057
BstNI	CCWGG	6 cut(s)	313, 371, 657, 942, 1481, 1573
BstNSI	RCATGY	4 cut(s)	28, 218, 1237, 1664
BstSCI	CCNGG	6 cut(s)	311, 369, 655, 940, 1479, 1571
BstSFI	CTRYAG	2 cut(s)	516, 1713
BstSLI	GKGCMC	2 cut(s)	1258, 1494
BstUI	CGCG	1 cut(s)	12
BstV2I	GAAGAC	1 cut(s)	863
BstX2I	RGATCY	7 cut(s)	407, 487, 716, 1010, 1120, 1519, 1990
BstYI	RGATCY	7 cut(s)	407, 487, 716, 1010, 1120, 1519, 1990
Bsu15I	ATCGAT	1 cut(s)	606
BsuI	GTATCC	2 cut(s)	1219, 2127
BsuRI	GGCC	5 cut(s)	47, 333, 416, 1825, 2273
BsuTUI	ATCGAT	1 cut(s)	606
BtgI	CCRYGG	1 cut(s)	2352
BtsCI	GGATG	6 cut(s)	106, 583, 826, 1678, 2161, 2275
BtsI	GCAGTG	2 cut(s)	827, 2120
BveI	ACCTGC	1 cut(s)	1762
Cac8I	GCNNGC	9 cut(s)	12, 93, 384, 1033, 1932, 2094, 2325, 2329, 2376
CaiI	CAGNNNCTG	4 cut(s)	1094, 1414, 1847, 2108
CfoI	GCGC	3 cut(s)	12, 14, 126
ClaI	ATCGAT	1 cut(s)	606
CseI	GACGC	1 cut(s)	454
Csp6I	GTAC	7 cut(s)	660, 797, 1200, 1417, 1726, 2344, 2365
CviQI	GTAC	7 cut(s)	660, 797, 1200, 1417, 1726, 2344, 2365
DraI	TTTAAA	2 cut(s)	1311, 2032
DraIII	CACNNNGTG	1 cut(s)	1670
DrdI	GACNNNNNNGTC	2 cut(s)	278, 2239
DseDI	GACNNNNNNGTC	2 cut(s)	278, 2239
Eco130I	CCWWGG	3 cut(s)	127, 927, 2352
Eco24I	GRGCYC	2 cut(s)	525, 2225
Eco47I	GGWCC	7 cut(s)	35, 935, 965, 1067, 1432, 1688, 2054
Eco57I	CTGAAG	2 cut(s)	882, 2222
Eco88I	CYCGRG	1 cut(s)	524
EcoNI	CCTNNNNNAGG	1 cut(s)	1478
EcoO109I	RGGNCCY	1 cut(s)	1688
EcoRI	GAATTC	1 cut(s)	139
EcoRII	CCWGG	6 cut(s)	311, 369, 655, 940, 1479, 1571
EcoT14I	CCWWGG	3 cut(s)	127, 927, 2352
EcoT22I	ATGCAT	2 cut(s)	216, 2218
EcoT38I	GRGCYC	2 cut(s)	525, 2225
ErhI	CCWWGG	3 cut(s)	127, 927, 2352
FalI	AAGNNNNNCTT	2 cut(s)	138, 170
FaqI	GGGAC	4 cut(s)	1364, 1418, 1701, 2067
FauNDI	CATATG	3 cut(s)	71, 210, 1621
FokI	GGATG	6 cut(s)	113, 590, 833, 1665, 2148, 2262
FriOI	GRGCYC	2 cut(s)	525, 2225
FspBI	CTAG	6 cut(s)	845, 875, 1704, 1920, 1944, 2370
GlaI	GCGC	3 cut(s)	11, 13, 125
GsuI	CTGGAG	2 cut(s)	408, 963
HaeII	RGCGCY	1 cut(s)	127
HaeIII	GGCC	5 cut(s)	47, 333, 416, 1825, 2273
HapII	CCGG	2 cut(s)	269, 917
HgaI	GACGC	1 cut(s)	454
HhaI	GCGC	3 cut(s)	12, 14, 126
Hin6I	GCGC	3 cut(s)	10, 12, 124
HinP1I	GCGC	3 cut(s)	10, 12, 124
HincII	GTYRAC	2 cut(s)	808, 1701
HindII	GTYRAC	2 cut(s)	808, 1701
HindIII	AAGCTT	3 cut(s)	321, 541, 1889
HinfI	GANTC	8 cut(s)	623, 706, 824, 1160, 1261, 2018, 2065, 2306
HpaI	GTTAAC	1 cut(s)	808
HpaII	CCGG	2 cut(s)	269, 917
HphI	GGTGA	3 cut(s)	1140, 1469, 1533
Hpy166II	GTNNAC	6 cut(s)	799, 808, 1492, 1541, 1701, 2367
Hpy8I	GTNNAC	6 cut(s)	799, 808, 1492, 1541, 1701, 2367
HpyAV	CCTTC	3 cut(s)	522, 1147, 1484
HpyCH4III	ACNGT	9 cut(s)	171, 664, 771, 1247, 1253, 1416, 1698, 1806, 2303
HpyCH4IV	ACGT	2 cut(s)	868, 2169
HpySE526I	ACGT	2 cut(s)	868, 2169
HspAI	GCGC	3 cut(s)	10, 12, 124
KpnI	GGTACC	1 cut(s)	2347
KspAI	GTTAAC	1 cut(s)	808
LmnI	GCTCC	9 cut(s)	7, 389, 427, 944, 1096, 1351, 1391, 1783, 2220
LweI	GCATC	2 cut(s)	1901, 1943
MaeI	CTAG	6 cut(s)	845, 875, 1704, 1920, 1944, 2370
MaeII	ACGT	2 cut(s)	868, 2169
MaeIII	GTNAC	7 cut(s)	1247, 1410, 1606, 1639, 1654, 1706, 1745
MboII	GAAGA	7 cut(s)	274, 301, 482, 863, 1115, 2221, 2309
MflI	RGATCY	7 cut(s)	407, 487, 716, 1010, 1120, 1519, 1990
MhlI	GDGCHC	6 cut(s)	525, 949, 1258, 1396, 1494, 2225
MlyI	GAGTC	3 cut(s)	632, 2012, 2059
MmeI	TCCRAC	4 cut(s)	153, 755, 1097, 2046
Mph1103I	ATGCAT	2 cut(s)	216, 2218
MroXI	GAANNNNTTC	1 cut(s)	1848
MslI	CAYNNNNRTG	4 cut(s)	213, 832, 1529, 1646
MspA1I	CMGCKG	2 cut(s)	419, 1333
MspI	CCGG	2 cut(s)	269, 917
MspR9I	CCNGG	6 cut(s)	313, 371, 657, 942, 1481, 1573
Mva1269I	GAATGC	2 cut(s)	565, 2218
MvaI	CCWGG	6 cut(s)	313, 371, 657, 942, 1481, 1573
MvnI	CGCG	1 cut(s)	12
NcoI	CCATGG	1 cut(s)	2352
NdeI	CATATG	3 cut(s)	71, 210, 1621
NlaIV	GGNNCC	5 cut(s)	1434, 1689, 2055, 2222, 2345
NmuCI	GTSAC	4 cut(s)	1410, 1639, 1654, 1706
NsiI	ATGCAT	2 cut(s)	216, 2218
NspI	RCATGY	4 cut(s)	28, 218, 1237, 1664
OliI	CACNNNNGTG	1 cut(s)	1646
PasI	CCCWGGG	1 cut(s)	1572
PauI	GCGCGC	1 cut(s)	10
PciI	ACATGT	1 cut(s)	1233
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PctI	GAATGC	2 cut(s)	565, 2218
PdmI	GAANNNNTTC	1 cut(s)	1848
PfeI	GAWTC	5 cut(s)	706, 824, 1160, 1261, 2306
PflMI	CCANNNNNTGG	4 cut(s)	244, 1486, 1550, 2353
PfoI	TCCNGGA	1 cut(s)	940
PleI	GAGTC	3 cut(s)	631, 2012, 2059
PpsI	GAGTC	3 cut(s)	631, 2012, 2059
PpuMI	RGGWCCY	1 cut(s)	1688
PscI	ACATGT	1 cut(s)	1233
Psp5II	RGGWCCY	1 cut(s)	1688
Psp6I	CCWGG	6 cut(s)	311, 369, 655, 940, 1479, 1571
PspGI	CCWGG	6 cut(s)	311, 369, 655, 940, 1479, 1571
PspN4I	GGNNCC	5 cut(s)	1434, 1689, 2055, 2222, 2345
PspPPI	RGGWCCY	1 cut(s)	1688
PstI	CTGCAG	1 cut(s)	520
PstNI	CAGNNNCTG	4 cut(s)	1094, 1414, 1847, 2108
PsuI	RGATCY	7 cut(s)	407, 487, 716, 1010, 1120, 1519, 1990
PteI	GCGCGC	1 cut(s)	10
RsaI	GTAC	7 cut(s)	661, 798, 1201, 1418, 1727, 2345, 2366
RsaNI	GTAC	7 cut(s)	660, 797, 1200, 1417, 1726, 2344, 2365
RseI	CAYNNNNRTG	4 cut(s)	213, 832, 1529, 1646
ScaI	AGTACT	1 cut(s)	1201
SchI	GAGTC	3 cut(s)	632, 2012, 2059
ScrFI	CCNGG	6 cut(s)	313, 371, 657, 942, 1481, 1573
SduI	GDGCHC	6 cut(s)	525, 949, 1258, 1396, 1494, 2225
SfaNI	GCATC	2 cut(s)	1901, 1943
SfcI	CTRYAG	2 cut(s)	516, 1713
SinI	GGWCC	7 cut(s)	35, 935, 965, 1067, 1432, 1688, 2054
SmiI	ATTTAAAT	1 cut(s)	2032
SmiMI	CAYNNNNRTG	4 cut(s)	213, 832, 1529, 1646
SpeI	ACTAGT	1 cut(s)	1703
SsiI	CCGC	9 cut(s)	417, 1097, 1131, 1333, 1471, 1565, 1758, 1869, 2379
SspMI	CTAG	6 cut(s)	845, 875, 1704, 1920, 1944, 2370
StyD4I	CCNGG	6 cut(s)	311, 369, 655, 940, 1479, 1571
StyI	CCWWGG	3 cut(s)	127, 927, 2352
SwaI	ATTTAAAT	1 cut(s)	2032
TaaI	ACNGT	9 cut(s)	171, 664, 771, 1247, 1253, 1416, 1698, 1806, 2303
TaiI	ACGT	2 cut(s)	871, 2172
TaqI	TCGA	5 cut(s)	57, 606, 812, 1019, 1107
TaqII	GACCGA	1 cut(s)	23
TatI	WGTACW	3 cut(s)	1199, 1725, 2364
TauI	GCSGC	4 cut(s)	419, 1100, 1473, 2381
TfiI	GAWTC	5 cut(s)	706, 824, 1160, 1261, 2306
TseFI	GTSAC	4 cut(s)	1410, 1639, 1654, 1706
Tsp45I	GTSAC	4 cut(s)	1410, 1639, 1654, 1706
TspDTI	ATGAA	4 cut(s)	65, 716, 837, 900
Van91I	CCANNNNNTGG	4 cut(s)	244, 1486, 1550, 2353
VneI	GTGCAC	1 cut(s)	1490
VpaK11BI	GGWCC	7 cut(s)	35, 935, 965, 1067, 1432, 1688, 2054
XagI	CCTNNNNNAGG	1 cut(s)	1478
XapI	RAATTY	4 cut(s)	139, 552, 1336, 2154
XceI	RCATGY	4 cut(s)	28, 218, 1237, 1664
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1569
XmnI	GAANNNNTTC	1 cut(s)	1848
XspI	CTAG	6 cut(s)	845, 875, 1704, 1920, 1944, 2370
ZrmI	AGTACT	1 cut(s)	1201
Zsp2I	ATGCAT	2 cut(s)	216, 2218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.