Rh6AG456700
MYB Family

Target of Myb protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
64078153 .. 64084335
6183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG456700.1

Sequence Viewer

Length: 1536 bp
ATGGATGTCTTGGCGGAAATGCTAAGTGCTATCGATCCAGAGAACAAAGAGGGGCTTAGGCAGGAGGTTATTGTTGATTTGGTTGAACAGTGTCGTACATATAAGCAGAGGGTGGTACACCTTGTTAACTCGACTTCGGATGAATCACTTCTATGTCAAGGACTAGCACTGAATGATGACTTACAACGTCTTCTAGCCAAACATGAAGCCATTGCTTCAGGCAATCCAGTTCAACCGGATAAACCCAAGGCTGGACCTCCTGGAGCACTTGTAGATGTTGGTGGTCCTCTTATTGACACTGGAAATGATAACAAACAACTTGATGGGAGATCCACTTCGAGTGCTGGTGCAAGCTCTAATCCACTAAATCAGTTATTACTTACTGGACCTCCAACTACTAATGGTGCAGCTCCTACGACAAAGGTCGATCCCAAGATGGATCTTCTTAGCGGAGATGACTTCAACTCACCGAAGGCAGATTCACTGGCTCTTGTTCCTGTGGATCAACAGCCAAGTAGTACTCCTGTATCCAATGCTCTTGTTCTTATGGACATGTTTTCTGACGGTAACAGTGCCCCAAATCCTGTAAATACCAATTCTCCTCATGCAGCCAACCAAACCAGTCCTTTAAACCCACAATTTCAACAGCAGCGGAATTTTCAAGCTCCACAAGGGGGAGTTCTCCCAAATGGAAGTGTCCAAAACATGGGAGCACCTCAGTATGAGCAGTCACTGTACGCACAAGGAGGTGGTCCCACTTGGAATGGTCAGATTATGCAGCAGCAGCAGCCGCCTTCACCAGGATATGGTTCACCAACCAGCGGATCATTACCACCGCCTCCCTGGGAAGCTCAGTCAGTAGATGATGGAAGCCCGGTAACAGGTTCTCCATATGCACCACCAATGCAAGTTACTCAAGTGGTTGTCACACATGCACAGGGTGGTTTCCATCCACAGGGACCTCAACGGTCAACTAGTGACCCTGTAGTTGGTATGTACATTCAACCAATTACAAGTAACCATTTGTCCGCAATCAATCAGCAGGTTGCTCCAAGCAGTCAGTTGGGTTTGGCACCGTCTCAACCACTTCAAGGGCCATCTATGGGTATGCTTCCACAGCCACCTACTCAAGCTGCATACCCTCAACAAATGTATGGCAATCAAATGGTCCCCTATGGCTATGATCAGCAACAGCAACAACAACAACAACAAGCGCAATACCTTCAGCAGCAACAGCAACATCAACAAGGGCAATATCTCCAGCAGCAACATCAACAAGCGCAATACCTCCAGCAGCAACAGCTACATGCGCAATACTATCAGCAACAGCAGCAGCAGCAGCAATATCTTCAGCAGCAGATGCACGGTCTTTCTGTTAATGATAATGGTACGAGAAACTCCTACCAGGCTCCCACATCATCGTATGTCCCACCTAGCAGGCCAGCCAAGCCAGAGGACAAGCTATTTGGAGACCTTGTTGACTTTGCAAAACTGAAACCAACAAAACCCACGGCCGGCAGAACTGGTAGCATGTGA

Protein Analysis

511

Amino Acids

55.11

Weight (kDa)

5.09

Isoelectric Point (pI)

56.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GAT PF03127 1 - 74 4.7e-18 GAT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1311
Acc36I ACCTGC 1 cut(s) 1033
AccB1I GGYRCC 1 cut(s) 1072
AccB7I CCANNNNNTGG 2 cut(s) 706, 806
AciI CCGC 7 cut(s) 14, 450, 652, 791, 822, 836, 1029
AclWI GGATC 6 cut(s) 29, 324, 422, 447, 510, 832
AcoI YGGCCR 1 cut(s) 1512
AcsI RAATTY 1 cut(s) 655
AcuI CTGAAG 3 cut(s) 201, 1208, 1334
AdeI CACNNNGTG 1 cut(s) 941
AfaI GTAC 6 cut(s) 97, 117, 520, 737, 998, 1390
AflIII ACRYGT 1 cut(s) 552
AgsI TTSAA 7 cut(s) 86, 233, 463, 644, 662, 1004, 1091
AhlI ACTAGT 1 cut(s) 974
AjnI CCWGG 4 cut(s) 259, 799, 842, 1404
AluBI AGCT 7 cut(s) 354, 410, 665, 851, 1133, 1303, 1462
AluI AGCT 7 cut(s) 354, 410, 665, 851, 1133, 1303, 1462
Alw21I GWGCWC 2 cut(s) 268, 715
Alw26I GTCTC 2 cut(s) 1083, 1464
AlwI GGATC 6 cut(s) 29, 324, 422, 447, 510, 832
AlwNI CAGNNNCTG 1 cut(s) 733
AoxI GGCC 3 cut(s) 1094, 1439, 1512
ApoI RAATTY 1 cut(s) 655
ArsI GACNNNNNNTTYG 2 cut(s) 1448, 1480
Asp700I GAANNNNTTC 1 cut(s) 147
AspLEI GCGC 3 cut(s) 1216, 1282, 1312
AspS9I GGNCC 7 cut(s) 254, 284, 386, 752, 959, 1094, 1168
AsuC2I CCSGG 1 cut(s) 875
AsuHPI GGTGA 3 cut(s) 459, 789, 804
AvaII GGWCC 6 cut(s) 254, 284, 386, 752, 959, 1168
BaeGI GKGCMC 1 cut(s) 577
BaeI ACNNNNGTAYC 2 cut(s) 510, 543
BanI GGYRCC 1 cut(s) 1072
BbsI GAAGAC 1 cut(s) 182
Bbv12I GWGCWC 2 cut(s) 268, 715
BccI CCATC 5 cut(s) 317, 430, 860, 957, 1105
BceAI ACGGC 1 cut(s) 1527
BciT130I CCWGG 4 cut(s) 261, 801, 844, 1406
BciVI GTATCC 1 cut(s) 538
BclI TGATCA 1 cut(s) 1183
BcnI CCSGG 1 cut(s) 875
BcoDI GTCTC 2 cut(s) 1083, 1464
BcuI ACTAGT 1 cut(s) 974
BfaI CTAG 4 cut(s) 164, 194, 975, 1434
BfmI CTRYAG 1 cut(s) 984
BfuAI ACCTGC 1 cut(s) 1033
BfuI GTATCC 1 cut(s) 538
BmcAI AGTACT 1 cut(s) 520
Bme1390I CCNGG 5 cut(s) 261, 801, 844, 875, 1406
Bme18I GGWCC 6 cut(s) 254, 284, 386, 752, 959, 1168
BmgT120I GGNCC 7 cut(s) 254, 284, 386, 752, 959, 1094, 1168
BmiI GGNNCC 5 cut(s) 754, 960, 1074, 1170, 1410
BmrFI CCNGG 5 cut(s) 261, 801, 844, 875, 1406
BmsI GCATC 1 cut(s) 1350
BoxI GACNNNNGTC 1 cut(s) 422
BpiI GAAGAC 1 cut(s) 182
BpmI CTGGAG 3 cut(s) 282, 1244, 1274
Bpu10I CCTNAGC 1 cut(s) 56
BpuEI CTTGAG 2 cut(s) 900, 1113
BpuMI CCSGG 1 cut(s) 875
Bsa29I ATCGAT 1 cut(s) 33
BsaI GGTCTC 1 cut(s) 1464
BsaJI CCNNGG 4 cut(s) 246, 842, 843, 1509
BsaWI WCCGGW 1 cut(s) 235
Bse118I RCCGGY 1 cut(s) 1514
Bse1I ACTGG 6 cut(s) 227, 304, 388, 489, 621, 1528
Bse3DI GCAATG 1 cut(s) 210
BseBI CCWGG 4 cut(s) 261, 801, 844, 1406
BseCI ATCGAT 1 cut(s) 33
BseDI CCNNGG 4 cut(s) 246, 842, 843, 1509
BseGI GGATG 3 cut(s) 10, 145, 949
BseMI GCAATG 1 cut(s) 210
BseMII CTCAG 2 cut(s) 731, 866
BseNI ACTGG 6 cut(s) 227, 304, 388, 489, 621, 1528
BseRI GAGGAG 1 cut(s) 591
BseSI GKGCMC 1 cut(s) 577
BseX3I CGGCCG 1 cut(s) 1512
BsgI GTGCAG 1 cut(s) 426
Bsh1285I CGRYCG 1 cut(s) 1515
BshFI GGCC 3 cut(s) 1096, 1441, 1514
BshNI GGYRCC 1 cut(s) 1072
BshVI ATCGAT 1 cut(s) 33
BsiEI CGRYCG 1 cut(s) 1515
BsiHKAI GWGCWC 2 cut(s) 268, 715
BsiSI CCGG 3 cut(s) 236, 875, 1515
BslFI GGGAC 4 cut(s) 738, 972, 1154, 1412
BsmAI GTCTC 2 cut(s) 1083, 1464
BsmBI CGTCTC 1 cut(s) 1083
BsmFI GGGAC 4 cut(s) 738, 972, 1154, 1412
BsnI GGCC 3 cut(s) 1096, 1441, 1514
Bso31I GGTCTC 1 cut(s) 1464
Bsp1286I GDGCHC 3 cut(s) 268, 577, 715
Bsp1407I TGTACA 1 cut(s) 996
Bsp143I GATC 7 cut(s) 34, 329, 427, 439, 502, 824, 1183
BspACI CCGC 7 cut(s) 14, 450, 652, 791, 822, 836, 1029
BspANI GGCC 3 cut(s) 1096, 1441, 1514
BspCNI CTCAG 2 cut(s) 730, 865
BspDI ATCGAT 1 cut(s) 33
BspLI GGNNCC 5 cut(s) 754, 960, 1074, 1170, 1410
BspMI ACCTGC 1 cut(s) 1033
BspPI GGATC 6 cut(s) 29, 324, 422, 447, 510, 832
BspT107I GGYRCC 1 cut(s) 1072
BspTNI GGTCTC 1 cut(s) 1464
BsrDI GCAATG 1 cut(s) 210
BsrFI RCCGGY 1 cut(s) 1514
BsrGI TGTACA 1 cut(s) 996
BsrI ACTGG 6 cut(s) 227, 304, 388, 489, 621, 1528
BssAI RCCGGY 1 cut(s) 1514
BssECI CCNNGG 4 cut(s) 246, 842, 843, 1509
BssMI GATC 7 cut(s) 34, 329, 427, 439, 502, 824, 1183
BssT1I CCWWGG 1 cut(s) 246
Bst2UI CCWGG 4 cut(s) 261, 801, 844, 1406
Bst4CI ACNGT 7 cut(s) 90, 566, 572, 735, 969, 1077, 1367
BstAPI GCANNNNNTGC 1 cut(s) 1360
BstAUI TGTACA 1 cut(s) 996
BstC8I GCNNGC 4 cut(s) 352, 1439, 1443, 1516
BstDEI CTNAG 5 cut(s) 23, 56, 446, 717, 852
BstDSI CCRYGG 1 cut(s) 1509
BstENI CCTNNNNNAGG 1 cut(s) 798
BstF5I GGATG 3 cut(s) 10, 145, 949
BstHHI GCGC 3 cut(s) 1216, 1282, 1312
BstKTI GATC 7 cut(s) 37, 332, 430, 442, 505, 827, 1186
BstMAI GTCTC 2 cut(s) 1083, 1464
BstMBI GATC 7 cut(s) 34, 329, 427, 439, 502, 824, 1183
BstMCI CGRYCG 1 cut(s) 1515
BstNI CCWGG 4 cut(s) 261, 801, 844, 1406
BstNSI RCATGY 4 cut(s) 556, 935, 1310, 1534
BstPAI GACNNNNGTC 1 cut(s) 422
BstSCI CCNGG 5 cut(s) 259, 799, 842, 873, 1404
BstSFI CTRYAG 1 cut(s) 984
BstSLI GKGCMC 1 cut(s) 577
BstV2I GAAGAC 1 cut(s) 182
BstX2I RGATCY 2 cut(s) 329, 439
BstYI RGATCY 2 cut(s) 329, 439
BstZI CGGCCG 1 cut(s) 1512
Bsu15I ATCGAT 1 cut(s) 33
BsuI GTATCC 1 cut(s) 538
BsuRI GGCC 3 cut(s) 1096, 1441, 1514
BsuTUI ATCGAT 1 cut(s) 33
BtgI CCRYGG 1 cut(s) 1509
BtsCI GGATG 3 cut(s) 10, 145, 949
BtsIMutI CAGTG 6 cut(s) 95, 167, 297, 482, 577, 731
BveI ACCTGC 1 cut(s) 1033
Cac8I GCNNGC 4 cut(s) 352, 1439, 1443, 1516
CaiI CAGNNNCTG 1 cut(s) 733
CfoI GCGC 3 cut(s) 1216, 1282, 1312
Cfr10I RCCGGY 1 cut(s) 1514
Cfr13I GGNCC 7 cut(s) 254, 284, 386, 752, 959, 1094, 1168
ClaI ATCGAT 1 cut(s) 33
Csp6I GTAC 6 cut(s) 96, 116, 519, 736, 997, 1389
CviAII CATG 7 cut(s) 203, 553, 605, 706, 932, 1307, 1531
CviQI GTAC 6 cut(s) 96, 116, 519, 736, 997, 1389
DdeI CTNAG 5 cut(s) 23, 56, 446, 717, 852
DpnI GATC 7 cut(s) 36, 331, 429, 441, 504, 826, 1185
DpnII GATC 7 cut(s) 34, 329, 427, 439, 502, 824, 1183
DraI TTTAAA 1 cut(s) 630
DraIII CACNNNGTG 1 cut(s) 941
EaeI YGGCCR 1 cut(s) 1512
EagI CGGCCG 1 cut(s) 1512
EciI GGCGGA 1 cut(s) 29
EclXI CGGCCG 1 cut(s) 1512
Eco130I CCWWGG 1 cut(s) 246
Eco31I GGTCTC 1 cut(s) 1464
Eco47I GGWCC 6 cut(s) 254, 284, 386, 752, 959, 1168
Eco52I CGGCCG 1 cut(s) 1512
Eco57I CTGAAG 3 cut(s) 201, 1208, 1334
EcoNI CCTNNNNNAGG 1 cut(s) 798
EcoO109I RGGNCCY 1 cut(s) 959
EcoRII CCWGG 4 cut(s) 259, 799, 842, 1404
EcoT14I CCWWGG 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 246
Esp3I CGTCTC 1 cut(s) 1083
FaeI CATG 7 cut(s) 206, 556, 608, 709, 935, 1310, 1534
FalI AAGNNNNNCTT 2 cut(s) 39, 71
FaqI GGGAC 4 cut(s) 738, 972, 1154, 1412
FatI CATG 7 cut(s) 202, 552, 604, 705, 931, 1306, 1530
FauNDI CATATG 1 cut(s) 892
FbaI TGATCA 1 cut(s) 1183
FokI GGATG 3 cut(s) 17, 152, 936
FspBI CTAG 4 cut(s) 164, 194, 975, 1434
FspI TGCGCA 1 cut(s) 1311
GlaI GCGC 3 cut(s) 1215, 1281, 1311
GsuI CTGGAG 3 cut(s) 282, 1244, 1274
HaeIII GGCC 3 cut(s) 1096, 1441, 1514
HapII CCGG 3 cut(s) 236, 875, 1515
HhaI GCGC 3 cut(s) 1216, 1282, 1312
Hin1II CATG 7 cut(s) 206, 556, 608, 709, 935, 1310, 1534
Hin6I GCGC 3 cut(s) 1214, 1280, 1310
HinP1I GCGC 3 cut(s) 1214, 1280, 1310
HincII GTYRAC 3 cut(s) 127, 972, 1480
HindII GTYRAC 3 cut(s) 127, 972, 1480
HinfI GANTC 2 cut(s) 143, 479
HpaI GTTAAC 1 cut(s) 127
HpaII CCGG 3 cut(s) 236, 875, 1515
HphI GGTGA 3 cut(s) 459, 789, 804
Hpy166II GTNNAC 5 cut(s) 118, 127, 812, 972, 1480
Hpy188I TCNGA 3 cut(s) 139, 562, 771
Hpy188III TCNNGA 1 cut(s) 38
Hpy8I GTNNAC 5 cut(s) 118, 127, 812, 972, 1480
HpyAV CCTTC 3 cut(s) 466, 804, 1232
HpyCH4III ACNGT 7 cut(s) 90, 566, 572, 735, 969, 1077, 1367
HpyCH4IV ACGT 1 cut(s) 187
HpyF3I CTNAG 5 cut(s) 23, 56, 446, 717, 852
HpySE526I ACGT 1 cut(s) 187
Hsp92II CATG 7 cut(s) 206, 556, 608, 709, 935, 1310, 1534
HspAI GCGC 3 cut(s) 1214, 1280, 1310
KroI GCCGGC 1 cut(s) 1514
KroNI GCCGGC 1 cut(s) 1516
Ksp22I TGATCA 1 cut(s) 1183
KspAI GTTAAC 1 cut(s) 127
Kzo9I GATC 7 cut(s) 34, 329, 427, 439, 502, 824, 1183
LmnI GCTCC 6 cut(s) 263, 415, 670, 710, 1054, 1414
LweI GCATC 1 cut(s) 1350
MaeI CTAG 4 cut(s) 164, 194, 975, 1434
MaeII ACGT 1 cut(s) 187
MaeIII GTNAC 7 cut(s) 566, 729, 877, 910, 925, 977, 1016
MalI GATC 7 cut(s) 36, 331, 429, 441, 504, 826, 1185
MboI GATC 7 cut(s) 34, 329, 427, 439, 502, 824, 1183
MboII GAAGA 3 cut(s) 182, 434, 1340
MflI RGATCY 2 cut(s) 329, 439
MhlI GDGCHC 3 cut(s) 268, 577, 715
MluCI AATT 4 cut(s) 595, 638, 655, 1008
MmeI TCCRAC 1 cut(s) 416
MroNI GCCGGC 1 cut(s) 1514
MroXI GAANNNNTTC 1 cut(s) 147
MseI TTAA 3 cut(s) 126, 629, 1377
MslI CAYNNNNRTG 1 cut(s) 151
MspA1I CMGCKG 2 cut(s) 652, 822
MspI CCGG 3 cut(s) 236, 875, 1515
MspR9I CCNGG 5 cut(s) 261, 801, 844, 875, 1406
MvaI CCWGG 4 cut(s) 261, 801, 844, 1406
NaeI GCCGGC 1 cut(s) 1516
NciI CCSGG 1 cut(s) 875
NdeI CATATG 1 cut(s) 892
NdeII GATC 7 cut(s) 34, 329, 427, 439, 502, 824, 1183
NgoMIV GCCGGC 1 cut(s) 1514
NlaIII CATG 7 cut(s) 206, 556, 608, 709, 935, 1310, 1534
NlaIV GGNNCC 5 cut(s) 754, 960, 1074, 1170, 1410
NmuCI GTSAC 3 cut(s) 729, 925, 977
NsbI TGCGCA 1 cut(s) 1311
NspI RCATGY 4 cut(s) 556, 935, 1310, 1534
PasI CCCWGGG 1 cut(s) 843
PciI ACATGT 1 cut(s) 552
PdiI GCCGGC 1 cut(s) 1516
PdmI GAANNNNTTC 1 cut(s) 147
PfeI GAWTC 2 cut(s) 143, 479
PflMI CCANNNNNTGG 2 cut(s) 706, 806
PfoI TCCNGGA 1 cut(s) 259
PpuMI RGGWCCY 1 cut(s) 959
PscI ACATGT 1 cut(s) 552
PshAI GACNNNNGTC 1 cut(s) 422
Psp5II RGGWCCY 1 cut(s) 959
Psp6I CCWGG 4 cut(s) 259, 799, 842, 1404
PspGI CCWGG 4 cut(s) 259, 799, 842, 1404
PspN4I GGNNCC 5 cut(s) 754, 960, 1074, 1170, 1410
PspPI GGNCC 7 cut(s) 254, 284, 386, 752, 959, 1094, 1168
PspPPI RGGWCCY 1 cut(s) 959
PstNI CAGNNNCTG 1 cut(s) 733
PsuI RGATCY 2 cut(s) 329, 439
RsaI GTAC 6 cut(s) 97, 117, 520, 737, 998, 1390
RsaNI GTAC 6 cut(s) 96, 116, 519, 736, 997, 1389
RseI CAYNNNNRTG 1 cut(s) 151
SaqAI TTAA 3 cut(s) 126, 629, 1377
Sau3AI GATC 7 cut(s) 34, 329, 427, 439, 502, 824, 1183
Sau96I GGNCC 7 cut(s) 254, 284, 386, 752, 959, 1094, 1168
ScaI AGTACT 1 cut(s) 520
ScrFI CCNGG 5 cut(s) 261, 801, 844, 875, 1406
SduI GDGCHC 3 cut(s) 268, 577, 715
SfaNI GCATC 1 cut(s) 1350
SfcI CTRYAG 1 cut(s) 984
SinI GGWCC 6 cut(s) 254, 284, 386, 752, 959, 1168
SmiMI CAYNNNNRTG 1 cut(s) 151
SmlI CTYRAG 2 cut(s) 915, 1128
SmoI CTYRAG 2 cut(s) 915, 1128
SpeI ACTAGT 1 cut(s) 974
Sse9I AATT 4 cut(s) 595, 638, 655, 1008
SsiI CCGC 7 cut(s) 14, 450, 652, 791, 822, 836, 1029
SspMI CTAG 4 cut(s) 164, 194, 975, 1434
StyD4I CCNGG 5 cut(s) 259, 799, 842, 873, 1404
StyI CCWWGG 1 cut(s) 246
TaaI ACNGT 7 cut(s) 90, 566, 572, 735, 969, 1077, 1367
TaiI ACGT 1 cut(s) 190
TaqI TCGA 4 cut(s) 33, 131, 338, 426
TasI AATT 4 cut(s) 595, 638, 655, 1008
TatI WGTACW 2 cut(s) 518, 996
TauI GCSGC 1 cut(s) 793
TfiI GAWTC 2 cut(s) 143, 479
Tru1I TTAA 3 cut(s) 126, 629, 1377
Tru9I TTAA 3 cut(s) 126, 629, 1377
TscAI CASTG 6 cut(s) 95, 174, 304, 489, 577, 738
TseFI GTSAC 3 cut(s) 729, 925, 977
Tsp45I GTSAC 3 cut(s) 729, 925, 977
TspDTI ATGAA 2 cut(s) 156, 219
TspRI CASTG 6 cut(s) 95, 174, 304, 489, 577, 738
Van91I CCANNNNNTGG 2 cut(s) 706, 806
VpaK11BI GGWCC 6 cut(s) 254, 284, 386, 752, 959, 1168
XagI CCTNNNNNAGG 1 cut(s) 798
XapI RAATTY 1 cut(s) 655
XceI RCATGY 4 cut(s) 556, 935, 1310, 1534
XcmI CCANNNNNNNNNTGG 1 cut(s) 840
XmnI GAANNNNTTC 1 cut(s) 147
XspI CTAG 4 cut(s) 164, 194, 975, 1434
ZrmI AGTACT 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.