Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007349

Physical Location & Seq

Genomic Coordinates Forward (+)

49590070 .. 49591682

Gene Structure 1613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0345000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGCACCCCACTCAATTTTCAGCAAGAGCCTCAGATTTTGTCGTATGTTTTACAGAAATGGGCATCCAGTCGGGGGAATGGCTTCGCATTTTGGTCCTCAAAAGCAGTTGTTTTGTACAAGAGTCACCGGCAGGTCCGAAATCCCAGCTGGCCAAGATGATTCTACAGTCTCCTACCTGGTTAACTCGTGTGGGTTGTCCCCAGAATCCGCTACCCTAGTATCCCACGAGGTGAAGCTTCATTCTTTAGAGAAACCAGACTCCGTTTTAGCGCTTTTGAAACACTATGAATTCTCGGAGGCCCAGATTTCAAAGGTTGTGCGGAGACTCCCACATATTCTTTTGGCCGATGTGGAGCAAACCCTTTTGCCAAACCTCGAGTTTTACTGCTCCATAGGAATGTCAAGGCTCCACCTTGCAAGAACACTGAGCTACAACCCATGGCTCATGAGTCTAAGCTTGAAAAACCATATTGTACCTACTTATAGCTTCTTCAAGAGCGTGGTGCTCTCTGATGTCAAAGTGATCCATATTTTGAAGCACAAGTCCTGGATTTTCAGGGAAAATTTATCCAAGAATTTGATACCCAATATTGAGCTTGTGAGAGAATTGGGCATTCCCCATTCCTGTATTGCACTCTTGCTAACTAGTTATACTGATGTAGTGATGAAAAAGCCTGAATTGTTCAGTCAACTTGTGCATCAAGTCACAGAAATGGGATTTGACCCTCAAAATTTGAGCTTTGTGCAGGCCATACACGCATTATATGGGAAAGAGACGACATGGAAACGATGTCAAGAGGTTTATAGGAGGTGGGGTTGGTCTGAGAATCATATACGTTCTGCTTTCAGGGTGTCTCCACTGTGTATGGTTATGTCAGAGAAGAAACTAATGGGAACAATGGATTTCTTAGTGAACAAGATGGGGTGGCAGTCACAAACAATTGCGAAATATCCCCATGTTTTGAGTTACAGCTTGCAGAAGAGATTCATCCCGAGGTTTTCAGTTGTTCGAGTTTTGTTTTTGAAAGGATTGATAGAAGAGGAGAACTTGAGTTTGGCTACTGGGATTTCGAGGTCAGATAAGTACTTCTTGGATAGGTTTGTGAACAGATATCTCAGCCAAGTACCTCAATTGTTGGATGTGTACCGTGGAAAAGTAGATATCCAGGATGTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006464 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0019899 GO:0030258 GO:0031625 GO:0032446 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042886 GO:0043170 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044389 GO:0044424 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0061630 GO:0061659 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0140096 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAT VHS

Protein Analysis

393

Amino Acids

45.23

Weight (kDa)

9.42

Isoelectric Point (pI)

52.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	90 - 246	2.6e-22	mTERF
mTERF	PF02536	259 - 364	5.2e-15	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32760 AT4G32760 AT4G32760
fragaria_vesca	FvH4_2g35970 FvH4_2g35970 FvH4_2g35970 FvH4_2g35970 FvH4_2g35970
malus_domestica	MD08G1116900.v1.1 MD15G1096400.v1.1
prunus_persica	Prupe.1G451300_v2.0.a1 Prupe.1G451300_v2.0.a1
pyrus_communis	pycom08g09740 pycom15g08850
rosa_chinensis	RchiOBHm_Chr6g0305901
rosa_laevigata	RLG00000010848
rosa_multiflora	Rmu_sc0001809.1_g000047
rosa_roxburghii	Rroxscaffold_7G00162230
rosa_rugosa	Rorug06G0344900 Rorug06G0345000
rosa_samantha	Rh6AG456700 Rh6BG444600 Rh6CG470600 Rh6DG457300
rosa_wichuraiana	Rw6G039840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	123
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	2 cut(s)	210, 322
AclWI	GGATC	1 cut(s)	520
AcoI	YGGCCR	2 cut(s)	151, 345
AcsI	RAATTY	4 cut(s)	290, 565, 577, 733
AdeI	CACNNNGTG	1 cut(s)	232
AfaI	GTAC	5 cut(s)	118, 477, 1088, 1128, 1148
AfeI	AGCGCT	1 cut(s)	273
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	6 cut(s)	280, 312, 463, 496, 538, 1027
AhlI	ACTAGT	1 cut(s)	647
AjnI	CCWGG	3 cut(s)	177, 548, 1167
AjuI	GAANNNNNNNTTGG	2 cut(s)	1040, 1072
AluBI	AGCT	8 cut(s)	149, 238, 432, 459, 489, 598, 741, 975
AluI	AGCT	8 cut(s)	149, 238, 432, 459, 489, 598, 741, 975
Alw21I	GWGCWC	1 cut(s)	510
Alw26I	GTCTC	4 cut(s)	175, 319, 770, 861
AlwI	GGATC	1 cut(s)	520
Ama87I	CYCGRG	2 cut(s)	377, 994
Aor51HI	AGCGCT	1 cut(s)	273
AoxI	GGCC	4 cut(s)	151, 300, 345, 750
ApoI	RAATTY	4 cut(s)	290, 565, 577, 733
Asp700I	GAANNNNTTC	2 cut(s)	82, 986
AspLEI	GCGC	1 cut(s)	274
AspS9I	GGNCC	3 cut(s)	95, 135, 301
AsuHPI	GGTGA	2 cut(s)	118, 244
AvaI	CYCGRG	2 cut(s)	377, 994
AvaII	GGWCC	2 cut(s)	95, 135
BaeI	ACNNNNGTAYC	2 cut(s)	204, 237
BalI	TGGCCA	1 cut(s)	153
BanI	GGYRCC	1 cut(s)	4
BauI	CACGAG	2 cut(s)	187, 227
Bbv12I	GWGCWC	1 cut(s)	510
BccI	CCATC	1 cut(s)	916
BciT130I	CCWGG	3 cut(s)	179, 550, 1169
BciVI	GTATCC	1 cut(s)	232
BcoDI	GTCTC	4 cut(s)	175, 319, 770, 861
BcuI	ACTAGT	1 cut(s)	647
BfaI	CTAG	2 cut(s)	218, 648
BfmI	CTRYAG	1 cut(s)	165
BfoI	RGCGCY	1 cut(s)	275
BfuAI	ACCTGC	1 cut(s)	123
BfuI	GTATCC	1 cut(s)	232
BmcAI	AGTACT	1 cut(s)	1088
Bme1390I	CCNGG	3 cut(s)	179, 550, 1169
Bme18I	GGWCC	2 cut(s)	95, 135
BmeT110I	CYCGRG	2 cut(s)	377, 994
BmgT120I	GGNCC	3 cut(s)	95, 135, 301
BmiI	GGNNCC	2 cut(s)	6, 410
BmrFI	CCNGG	3 cut(s)	179, 550, 1169
BmrI	ACTGGG	1 cut(s)	1074
BmsI	GCATC	2 cut(s)	73, 709
BmuI	ACTGGG	1 cut(s)	1074
BpuEI	CTTGAG	1 cut(s)	1072
BsaJI	CCNNGG	3 cut(s)	440, 995, 1150
BsaXI	ACNNNNNCTCC	2 cut(s)	802, 832
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse118I	RCCGGY	1 cut(s)	128
Bse1I	ACTGG	2 cut(s)	68, 1069
BseBI	CCWGG	3 cut(s)	179, 550, 1169
BseDI	CCNNGG	3 cut(s)	440, 995, 1150
BseGI	GGATG	4 cut(s)	64, 990, 1147, 1177
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMII	CTCAG	4 cut(s)	46, 419, 816, 1132
BseNI	ACTGG	2 cut(s)	68, 1069
BseRI	GAGGAG	1 cut(s)	1058
BseYI	CCCAGC	1 cut(s)	145
BsgI	GTGCAG	1 cut(s)	767
BshFI	GGCC	4 cut(s)	153, 302, 347, 752
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	510
BsiHKCI	CYCGRG	2 cut(s)	377, 994
BsiSI	CCGG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	184
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	4 cut(s)	175, 319, 770, 861
BsmBI	CGTCTC	1 cut(s)	770
BsmFI	GGGAC	1 cut(s)	184
BsmI	GAATGC	1 cut(s)	615
BsnI	GGCC	4 cut(s)	153, 302, 347, 752
BsoBI	CYCGRG	2 cut(s)	377, 994
Bsp1286I	GDGCHC	1 cut(s)	510
Bsp1407I	TGTACA	1 cut(s)	116
Bsp143I	GATC	1 cut(s)	525
Bsp19I	CCATGG	1 cut(s)	440
BspACI	CCGC	2 cut(s)	210, 322
BspANI	GGCC	4 cut(s)	153, 302, 347, 752
BspCNI	CTCAG	4 cut(s)	45, 420, 817, 1131
BspHI	TCATGA	1 cut(s)	447
BspLI	GGNNCC	2 cut(s)	6, 410
BspMI	ACCTGC	1 cut(s)	123
BspPI	GGATC	1 cut(s)	520
BspT107I	GGYRCC	1 cut(s)	4
BsrFI	RCCGGY	1 cut(s)	128
BsrGI	TGTACA	1 cut(s)	116
BsrI	ACTGG	2 cut(s)	68, 1069
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	3 cut(s)	440, 995, 1150
BssMI	GATC	1 cut(s)	525
BssSI	CACGAG	2 cut(s)	187, 227
BssT1I	CCWWGG	1 cut(s)	440
Bst2BI	CACGAG	2 cut(s)	187, 227
Bst2UI	CCWGG	3 cut(s)	179, 550, 1169
Bst4CI	ACNGT	3 cut(s)	169, 864, 1151
Bst6I	CTCTTC	2 cut(s)	977, 1035
BstAUI	TGTACA	1 cut(s)	116
BstC8I	GCNNGC	3 cut(s)	151, 750, 977
BstDEI	CTNAG	6 cut(s)	32, 428, 455, 825, 910, 1118
BstDSI	CCRYGG	2 cut(s)	440, 1150
BstF5I	GGATG	4 cut(s)	64, 990, 1147, 1177
BstH2I	RGCGCY	1 cut(s)	275
BstHHI	GCGC	1 cut(s)	274
BstKTI	GATC	1 cut(s)	528
BstMAI	GTCTC	4 cut(s)	175, 319, 770, 861
BstMBI	GATC	1 cut(s)	525
BstMWI	GCNNNNNNNGC	1 cut(s)	758
BstNI	CCWGG	3 cut(s)	179, 550, 1169
BstSCI	CCNGG	3 cut(s)	177, 548, 1167
BstSFI	CTRYAG	1 cut(s)	165
BsuI	GTATCC	1 cut(s)	232
BsuRI	GGCC	4 cut(s)	153, 302, 347, 752
BtgI	CCRYGG	2 cut(s)	440, 1150
BtsCI	GGATG	4 cut(s)	64, 990, 1147, 1177
BtsIMutI	CAGTG	2 cut(s)	425, 860
BveI	ACCTGC	1 cut(s)	123
Cac8I	GCNNGC	3 cut(s)	151, 750, 977
CciI	TCATGA	1 cut(s)	447
CfoI	GCGC	1 cut(s)	274
Cfr10I	RCCGGY	1 cut(s)	128
Cfr13I	GGNCC	3 cut(s)	95, 135, 301
CsiI	ACCWGGT	1 cut(s)	177
Csp6I	GTAC	5 cut(s)	117, 476, 1087, 1127, 1147
CviAII	CATG	4 cut(s)	441, 448, 783, 959
CviQI	GTAC	5 cut(s)	117, 476, 1087, 1127, 1147
DdeI	CTNAG	6 cut(s)	32, 428, 455, 825, 910, 1118
DpnI	GATC	1 cut(s)	527
DpnII	GATC	1 cut(s)	525
DraIII	CACNNNGTG	1 cut(s)	232
EaeI	YGGCCR	2 cut(s)	151, 345
Eam1104I	CTCTTC	2 cut(s)	977, 1035
EarI	CTCTTC	2 cut(s)	977, 1035
Eco130I	CCWWGG	1 cut(s)	440
Eco32I	GATATC	2 cut(s)	1115, 1165
Eco47I	GGWCC	2 cut(s)	95, 135
Eco47III	AGCGCT	1 cut(s)	273
Eco88I	CYCGRG	2 cut(s)	377, 994
EcoRI	GAATTC	1 cut(s)	290
EcoRII	CCWGG	3 cut(s)	177, 548, 1167
EcoRV	GATATC	2 cut(s)	1115, 1165
EcoT14I	CCWWGG	1 cut(s)	440
ErhI	CCWWGG	1 cut(s)	440
Esp3I	CGTCTC	1 cut(s)	770
FaeI	CATG	4 cut(s)	444, 451, 786, 962
FalI	AAGNNNNNCTT	2 cut(s)	1076, 1108
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	4 cut(s)	440, 447, 782, 958
FokI	GGATG	3 cut(s)	51, 977, 1154
FspBI	CTAG	2 cut(s)	218, 648
GlaI	GCGC	1 cut(s)	273
GsaI	CCCAGC	1 cut(s)	149
HaeII	RGCGCY	1 cut(s)	275
HaeIII	GGCC	4 cut(s)	153, 302, 347, 752
HapII	CCGG	1 cut(s)	129
HhaI	GCGC	1 cut(s)	274
Hin1II	CATG	4 cut(s)	444, 451, 786, 962
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HincII	GTYRAC	2 cut(s)	184, 692
HindII	GTYRAC	2 cut(s)	184, 692
HindIII	AAGCTT	2 cut(s)	236, 457
HinfI	GANTC	8 cut(s)	123, 161, 206, 260, 327, 451, 829, 987
HpaI	GTTAAC	1 cut(s)	184
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	2 cut(s)	118, 244
Hpy166II	GTNNAC	5 cut(s)	184, 692, 916, 1108, 1147
Hpy188I	TCNGA	7 cut(s)	35, 139, 298, 514, 826, 880, 1081
Hpy188III	TCNNGA	4 cut(s)	448, 496, 797, 994
Hpy8I	GTNNAC	5 cut(s)	184, 692, 916, 1108, 1147
HpyCH4III	ACNGT	3 cut(s)	169, 864, 1151
HpyCH4IV	ACGT	1 cut(s)	838
HpyCH4V	TGCA	5 cut(s)	419, 635, 700, 748, 979
HpyF10VI	GCNNNNNNNGC	1 cut(s)	758
HpyF3I	CTNAG	6 cut(s)	32, 428, 455, 825, 910, 1118
HpySE526I	ACGT	1 cut(s)	838
Hsp92II	CATG	4 cut(s)	444, 451, 786, 962
HspAI	GCGC	1 cut(s)	272
KspAI	GTTAAC	1 cut(s)	184
Kzo9I	GATC	1 cut(s)	525
LmnI	GCTCC	3 cut(s)	355, 395, 414
LweI	GCATC	2 cut(s)	73, 709
MabI	ACCWGGT	1 cut(s)	177
MaeI	CTAG	2 cut(s)	218, 648
MaeII	ACGT	1 cut(s)	838
MaeIII	GTNAC	4 cut(s)	124, 706, 933, 968
MalI	GATC	1 cut(s)	527
MboI	GATC	1 cut(s)	525
MboII	GAAGA	4 cut(s)	484, 895, 994, 1052
MfeI	CAATTG	2 cut(s)	942, 1133
MhlI	GDGCHC	1 cut(s)	510
MlsI	TGGCCA	1 cut(s)	153
MluCI	AATT	9 cut(s)	15, 290, 565, 577, 608, 680, 733, 942, 1133
MluNI	TGGCCA	1 cut(s)	153
MlyI	GAGTC	4 cut(s)	132, 254, 321, 460
MmeI	TCCRAC	1 cut(s)	1119
Mox20I	TGGCCA	1 cut(s)	153
MroXI	GAANNNNTTC	2 cut(s)	82, 986
MscI	TGGCCA	1 cut(s)	153
MseI	TTAA	1 cut(s)	183
MslI	CAYNNNNRTG	2 cut(s)	398, 713
Msp20I	TGGCCA	1 cut(s)	153
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	3 cut(s)	179, 550, 1169
MunI	CAATTG	2 cut(s)	942, 1133
Mva1269I	GAATGC	1 cut(s)	615
MvaI	CCWGG	3 cut(s)	179, 550, 1169
MwoI	GCNNNNNNNGC	1 cut(s)	758
NcoI	CCATGG	1 cut(s)	440
NdeII	GATC	1 cut(s)	525
NlaIII	CATG	4 cut(s)	444, 451, 786, 962
NlaIV	GGNNCC	2 cut(s)	6, 410
NmuCI	GTSAC	3 cut(s)	124, 706, 933
PaeR7I	CTCGAG	1 cut(s)	377
PagI	TCATGA	1 cut(s)	447
PctI	GAATGC	1 cut(s)	615
PdmI	GAANNNNTTC	2 cut(s)	82, 986
PfeI	GAWTC	4 cut(s)	161, 206, 829, 987
PfoI	TCCNGGA	2 cut(s)	548, 1167
PleI	GAGTC	4 cut(s)	131, 254, 321, 459
PpsI	GAGTC	4 cut(s)	131, 254, 321, 459
Psp6I	CCWGG	3 cut(s)	177, 548, 1167
PspFI	CCCAGC	1 cut(s)	145
PspGI	CCWGG	3 cut(s)	177, 548, 1167
PspN4I	GGNNCC	2 cut(s)	6, 410
PspPI	GGNCC	3 cut(s)	95, 135, 301
PspXI	VCTCGAGB	1 cut(s)	377
PvuII	CAGCTG	1 cut(s)	149
RsaI	GTAC	5 cut(s)	118, 477, 1088, 1128, 1148
RsaNI	GTAC	5 cut(s)	117, 476, 1087, 1127, 1147
RseI	CAYNNNNRTG	2 cut(s)	398, 713
SaqAI	TTAA	1 cut(s)	183
Sau3AI	GATC	1 cut(s)	525
Sau96I	GGNCC	3 cut(s)	95, 135, 301
ScaI	AGTACT	1 cut(s)	1088
SchI	GAGTC	4 cut(s)	132, 254, 321, 460
ScrFI	CCNGG	3 cut(s)	179, 550, 1169
SduI	GDGCHC	1 cut(s)	510
SexAI	ACCWGGT	1 cut(s)	177
SfaNI	GCATC	2 cut(s)	73, 709
SfcI	CTRYAG	1 cut(s)	165
Sfr274I	CTCGAG	1 cut(s)	377
SinI	GGWCC	2 cut(s)	95, 135
SlaI	CTCGAG	1 cut(s)	377
SmiMI	CAYNNNNRTG	2 cut(s)	398, 713
SmlI	CTYRAG	2 cut(s)	377, 1051
SmoI	CTYRAG	2 cut(s)	377, 1051
SpeI	ACTAGT	1 cut(s)	647
Sse9I	AATT	9 cut(s)	15, 290, 565, 577, 608, 680, 733, 942, 1133
SsiI	CCGC	2 cut(s)	210, 322
SspI	AATATT	1 cut(s)	592
SspMI	CTAG	2 cut(s)	218, 648
StyD4I	CCNGG	3 cut(s)	177, 548, 1167
StyI	CCWWGG	1 cut(s)	440
TaaI	ACNGT	3 cut(s)	169, 864, 1151
TaiI	ACGT	1 cut(s)	841
TaqI	TCGA	3 cut(s)	378, 1012, 1073
TasI	AATT	9 cut(s)	15, 290, 565, 577, 608, 680, 733, 942, 1133
TatI	WGTACW	2 cut(s)	116, 1086
TfiI	GAWTC	4 cut(s)	161, 206, 829, 987
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TscAI	CASTG	2 cut(s)	432, 867
TseFI	GTSAC	3 cut(s)	124, 706, 933
Tsp45I	GTSAC	3 cut(s)	124, 706, 933
TspDTI	ATGAA	4 cut(s)	230, 303, 683, 979
TspGWI	ACGGA	1 cut(s)	253
TspRI	CASTG	2 cut(s)	432, 867
VpaK11BI	GGWCC	2 cut(s)	95, 135
XapI	RAATTY	4 cut(s)	290, 565, 577, 733
XhoI	CTCGAG	1 cut(s)	377
XmnI	GAANNNNTTC	2 cut(s)	82, 986
XspI	CTAG	2 cut(s)	218, 648
ZrmI	AGTACT	1 cut(s)	1088

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.