Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0011660

Physical Location & Seq

Genomic Coordinates Reverse (-)

5287054 .. 5290162

Gene Structure 3109 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010910

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGAAGGCTGCCAGAATAAGCATGGAGTTGAAGAAAGATAAGCTAGTGAGTCTCCTCCTCGTTTCTGGAGAAGTACTTGTATTGTCTTTGGTGGGGATTACAGAACTTGAGACCTACTTGCAATCTCTCACCGTGAGACTTGAGGAATGGAGGCTCAGGCGGCGAGACACAGAGGAGTGGATGAGACATAGGCAACTCCCTCAAGATCTGCAAGAACGTGTTAGGCGATTTGTGCAGTACAAGTGGCTTGCAACTCGAGGAGTTGATGAAGAATCAATCTTATACGCCTTGCCTACAGATCTTCGTCGAGACATCCAACGTCATCTATGTTTAGACCTTGTTCGACGCGTCCCATTTTTCTCACAGATGGATGGTCAGCTACTTGATGCCATATGCGAGCGTTTGGTATCCTCCTTGAGTACTCAAGGCACCTACATTGTTCGTGAAGGTGACCCCGTCACCGAGATGTTATTCATTATCCGAGGAAAGCTAGAGAGCTCGACAACAAATGGAGGTCGGACAGGTTTCTTCAACTCAATTACTTTGAGACCTGGTGATTTTTGTGGTGAAGAATTGCTTGCTTGGGCATTGCTTCCCAAATCTACTCTCAACTTGCCTTCTTCTACAAGAACTGTTAGATCACTTGATGAAGTAGAGGCCTTTGCACTTAGAGCAGAAGATCTCAAGTTTGTTGCCAATCAATTTCGACGACTTCATAGCAAGAAGTTGCAACACACATTCCGATTCTACTCTTACCACTGGAGAACTTGGGCTGCATGTTTCATTCAGGTTGCGTGGCGTCGATTCAAGAAGAGATTGTTGGCAAAAAACCTTAGCATGGTTGAGTCATTTTCATATAACTGTGACAACCAAGAGGATGATGAGGCCGAACAAGAAAAGGAGGAGTACTCTAGGACTAATGCAGCTTCAAATGCTTCACAAGCGAGACAGAATTTGGGGGTCACCATTCTGGCTTCGAGGTTTGCTGCAAACACGAGAAAAGGAGCTCAGAAAATGAAGGATGTTCAGTTGCCCAAGCTGCAAAAGCCTGAAGAGCCAGACTTCTCAGTAGAGCCAGAAGATGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

363

Amino Acids

42.09

Weight (kDa)

8.71

Isoelectric Point (pI)

52.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
cNMP_binding	PF00027	142 - 231	3e-08	Cyclic nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011660)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g36620
malus_domestica	MD15G1106000.v1.1
prunus_persica	Prupe.1G457900_v2.0.a1
pyrus_communis	pycom15g09630 pycom15g09650
rosa_chinensis	RchiOBHm_Chr6g0305181
rosa_laevigata	RLG00000010910
rosa_multiflora	Rmu_sc0000061.1_g000007 Rmu_sc0000061.1_g000010
rosa_roxburghii	Rroxscaffold_7G00163060 Rroxscaffold_7G00163070
rosa_rugosa	Rorug06G0338300
rosa_samantha	Rh6AG450000 Rh6BG451400 Rh6CG463700 Rh6CG463800 Rh6DG450600
rosa_wichuraiana	Rw6G039200 Rw6G039220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	428
AccII	CGCG	1 cut(s)	348
AciI	CCGC	1 cut(s)	160
AcsI	RAATTY	1 cut(s)	952
AcuI	CTGAAG	1 cut(s)	1071
AcyI	GRCGYC	1 cut(s)	799
AfaI	GTAC	4 cut(s)	75, 239, 421, 908
AfiI	CCNNNNNNNGG	1 cut(s)	838
AflIII	ACRYGT	2 cut(s)	217, 346
AgsI	TTSAA	4 cut(s)	31, 532, 808, 930
AjnI	CCWGG	1 cut(s)	550
AjuI	GAANNNNNNNTTGG	2 cut(s)	803, 835
AluBI	AGCT	7 cut(s)	43, 379, 490, 498, 926, 1007, 1039
AluI	AGCT	7 cut(s)	43, 379, 490, 498, 926, 1007, 1039
Alw21I	GWGCWC	2 cut(s)	500, 1009
Alw26I	GTCTC	8 cut(s)	56, 104, 130, 159, 178, 303, 541, 940
Ama87I	CYCGRG	1 cut(s)	255
AoxI	GGCC	2 cut(s)	657, 885
ApeKI	GCWGC	5 cut(s)	8, 773, 923, 986, 1039
ApoI	RAATTY	1 cut(s)	952
AsuHPI	GGTGA	6 cut(s)	121, 451, 461, 566, 578, 955
AvaI	CYCGRG	1 cut(s)	255
BanI	GGYRCC	1 cut(s)	428
BanII	GRGCYC	2 cut(s)	500, 1009
BauI	CACGAG	1 cut(s)	994
Bbv12I	GWGCWC	2 cut(s)	500, 1009
BbvI	GCAGC	4 cut(s)	760, 935, 973, 1026
BccI	CCATC	2 cut(s)	361, 365
BciT130I	CCWGG	1 cut(s)	552
BciVI	GTATCC	1 cut(s)	418
BcoDI	GTCTC	8 cut(s)	56, 104, 130, 159, 178, 303, 541, 940
BfaI	CTAG	4 cut(s)	44, 491, 912, 1087
BfmI	CTRYAG	1 cut(s)	294
BfuI	GTATCC	1 cut(s)	418
BglII	AGATCT	3 cut(s)	205, 298, 679
BisI	GCNGC	6 cut(s)	9, 161, 774, 924, 987, 1040
BlsI	GCNGC	6 cut(s)	10, 162, 775, 925, 988, 1041
BmcAI	AGTACT	3 cut(s)	75, 421, 908
Bme1390I	CCNGG	1 cut(s)	552
BmeT110I	CYCGRG	1 cut(s)	255
BmiI	GGNNCC	1 cut(s)	430
BmrFI	CCNGG	1 cut(s)	552
BmsI	GCATC	1 cut(s)	376
BplI	GAGNNNNNCTC	2 cut(s)	893, 925
BpmI	CTGGAG	2 cut(s)	87, 781
Bpu10I	CCTNAGC	2 cut(s)	155, 833
BpuEI	CTTGAG	6 cut(s)	128, 161, 186, 408, 436, 668
BsaHI	GRCGYC	1 cut(s)	799
BsaI	GGTCTC	2 cut(s)	104, 541
BsaJI	CCNNGG	1 cut(s)	481
Bsc4I	CCNNNNNNNGG	1 cut(s)	838
Bse1I	ACTGG	1 cut(s)	764
Bse3DI	GCAATG	1 cut(s)	587
BseBI	CCWGG	1 cut(s)	552
BseDI	CCNNGG	1 cut(s)	481
BseGI	GGATG	5 cut(s)	186, 312, 376, 883, 1027
BseLI	CCNNNNNNNGG	1 cut(s)	838
BseMI	GCAATG	1 cut(s)	587
BseMII	CTCAG	3 cut(s)	169, 1022, 1080
BseNI	ACTGG	1 cut(s)	764
BseRI	GAGGAG	5 cut(s)	44, 47, 188, 273, 917
BseXI	GCAGC	4 cut(s)	760, 935, 973, 1026
BsgI	GTGCAG	1 cut(s)	254
Bsh1236I	CGCG	1 cut(s)	348
BshFI	GGCC	2 cut(s)	659, 887
BshNI	GGYRCC	1 cut(s)	428
BsiHKAI	GWGCWC	2 cut(s)	500, 1009
BsiHKCI	CYCGRG	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	335
BslI	CCNNNNNNNGG	1 cut(s)	838
BsmAI	GTCTC	8 cut(s)	56, 104, 130, 159, 178, 303, 541, 940
BsmFI	GGGAC	1 cut(s)	335
BsnI	GGCC	2 cut(s)	659, 887
Bso31I	GGTCTC	2 cut(s)	104, 541
BsoBI	CYCGRG	1 cut(s)	255
Bsp1286I	GDGCHC	2 cut(s)	500, 1009
Bsp143I	GATC	4 cut(s)	205, 298, 638, 679
BspACI	CCGC	1 cut(s)	160
BspANI	GGCC	2 cut(s)	659, 887
BspCNI	CTCAG	3 cut(s)	168, 1021, 1079
BspFNI	CGCG	1 cut(s)	348
BspLI	GGNNCC	1 cut(s)	430
BspQI	GCTCTTC	1 cut(s)	1047
BspT107I	GGYRCC	1 cut(s)	428
BspTNI	GGTCTC	2 cut(s)	104, 541
BsrDI	GCAATG	1 cut(s)	587
BsrI	ACTGG	1 cut(s)	764
BssECI	CCNNGG	1 cut(s)	481
BssMI	GATC	4 cut(s)	205, 298, 638, 679
BssNI	GRCGYC	1 cut(s)	799
BssSI	CACGAG	1 cut(s)	994
Bst2BI	CACGAG	1 cut(s)	994
Bst2UI	CCWGG	1 cut(s)	552
Bst4CI	ACNGT	3 cut(s)	133, 634, 863
Bst6I	CTCTTC	2 cut(s)	806, 1047
BstACI	GRCGYC	1 cut(s)	799
BstC8I	GCNNGC	3 cut(s)	249, 398, 579
BstDEI	CTNAG	5 cut(s)	155, 668, 833, 1008, 1066
BstEII	GGTNACC	2 cut(s)	449, 961
BstF5I	GGATG	5 cut(s)	186, 312, 376, 883, 1027
BstFNI	CGCG	1 cut(s)	348
BstKTI	GATC	4 cut(s)	208, 301, 641, 682
BstMAI	GTCTC	8 cut(s)	56, 104, 130, 159, 178, 303, 541, 940
BstMBI	GATC	4 cut(s)	205, 298, 638, 679
BstMWI	GCNNNNNNNGC	8 cut(s)	160, 232, 671, 932, 941, 1039, 1045, 1054
BstNI	CCWGG	1 cut(s)	552
BstNSI	RCATGY	1 cut(s)	780
BstPI	GGTNACC	2 cut(s)	449, 961
BstSCI	CCNGG	1 cut(s)	550
BstSFI	CTRYAG	1 cut(s)	294
BstUI	CGCG	1 cut(s)	348
BstV1I	GCAGC	4 cut(s)	760, 935, 973, 1026
BstX2I	RGATCY	3 cut(s)	205, 298, 679
BstYI	RGATCY	3 cut(s)	205, 298, 679
BsuI	GTATCC	1 cut(s)	418
BsuRI	GGCC	2 cut(s)	659, 887
BtsCI	GGATG	5 cut(s)	186, 312, 376, 883, 1027
BtsIMutI	CAGTG	1 cut(s)	757
Cac8I	GCNNGC	3 cut(s)	249, 398, 579
CseI	GACGC	3 cut(s)	337, 354, 788
CsiI	ACCWGGT	1 cut(s)	550
Csp6I	GTAC	4 cut(s)	74, 238, 420, 907
CviAII	CATG	3 cut(s)	22, 777, 838
CviQI	GTAC	4 cut(s)	74, 238, 420, 907
DdeI	CTNAG	5 cut(s)	155, 668, 833, 1008, 1066
DpnI	GATC	4 cut(s)	207, 300, 640, 681
DpnII	GATC	4 cut(s)	205, 298, 638, 679
Eam1104I	CTCTTC	2 cut(s)	806, 1047
EarI	CTCTTC	2 cut(s)	806, 1047
Ecl136II	GAGCTC	2 cut(s)	498, 1007
Eco147I	AGGCCT	1 cut(s)	659
Eco24I	GRGCYC	2 cut(s)	500, 1009
Eco31I	GGTCTC	2 cut(s)	104, 541
Eco53kI	GAGCTC	2 cut(s)	498, 1007
Eco57I	CTGAAG	1 cut(s)	1071
Eco88I	CYCGRG	1 cut(s)	255
Eco91I	GGTNACC	2 cut(s)	449, 961
EcoICRI	GAGCTC	2 cut(s)	498, 1007
EcoO65I	GGTNACC	2 cut(s)	449, 961
EcoRII	CCWGG	1 cut(s)	550
EcoT38I	GRGCYC	2 cut(s)	500, 1009
FaeI	CATG	3 cut(s)	25, 780, 841
FalI	AAGNNNNNCTT	2 cut(s)	561, 593
FaqI	GGGAC	1 cut(s)	335
FatI	CATG	3 cut(s)	21, 776, 837
FauNDI	CATATG	1 cut(s)	392
Fnu4HI	GCNGC	6 cut(s)	9, 161, 774, 924, 987, 1040
FokI	GGATG	5 cut(s)	193, 299, 383, 890, 1034
FriOI	GRGCYC	2 cut(s)	500, 1009
Fsp4HI	GCNGC	6 cut(s)	9, 161, 774, 924, 987, 1040
FspBI	CTAG	4 cut(s)	44, 491, 912, 1087
GluI	GCNGC	6 cut(s)	9, 161, 774, 924, 987, 1040
GsuI	CTGGAG	2 cut(s)	87, 781
HaeIII	GGCC	2 cut(s)	659, 887
HgaI	GACGC	3 cut(s)	337, 354, 788
Hin1I	GRCGYC	1 cut(s)	799
Hin1II	CATG	3 cut(s)	25, 780, 841
HinfI	GANTC	5 cut(s)	49, 272, 744, 804, 845
HphI	GGTGA	6 cut(s)	121, 451, 461, 566, 578, 955
Hpy188I	TCNGA	4 cut(s)	482, 519, 743, 1011
Hpy188III	TCNNGA	5 cut(s)	66, 203, 308, 443, 808
Hpy99I	CGWCG	4 cut(s)	309, 348, 711, 804
HpyAV	CCTTC	3 cut(s)	440, 627, 1012
HpyCH4III	ACNGT	3 cut(s)	133, 634, 863
HpyCH4IV	ACGT	2 cut(s)	217, 319
HpyF10VI	GCNNNNNNNGC	8 cut(s)	160, 232, 671, 932, 941, 1039, 1045, 1054
HpyF3I	CTNAG	5 cut(s)	155, 668, 833, 1008, 1066
HpySE526I	ACGT	2 cut(s)	217, 319
Hsp92I	GRCGYC	1 cut(s)	799
Hsp92II	CATG	3 cut(s)	25, 780, 841
Kzo9I	GATC	4 cut(s)	205, 298, 638, 679
LguI	GCTCTTC	1 cut(s)	1047
LmnI	GCTCC	1 cut(s)	1004
Lsp1109I	GCAGC	4 cut(s)	760, 935, 973, 1026
LweI	GCATC	1 cut(s)	376
MabI	ACCWGGT	1 cut(s)	550
MaeI	CTAG	4 cut(s)	44, 491, 912, 1087
MaeII	ACGT	2 cut(s)	217, 319
MaeIII	GTNAC	4 cut(s)	449, 457, 863, 961
MalI	GATC	4 cut(s)	207, 300, 640, 681
MboI	GATC	4 cut(s)	205, 298, 638, 679
MboII	GAAGA	9 cut(s)	43, 281, 293, 520, 581, 612, 689, 823, 1064
MflI	RGATCY	3 cut(s)	205, 298, 679
MhlI	GDGCHC	2 cut(s)	500, 1009
MluCI	AATT	4 cut(s)	537, 572, 701, 952
MluI	ACGCGT	1 cut(s)	346
MlyI	GAGTC	2 cut(s)	58, 854
MmeI	TCCRAC	2 cut(s)	340, 497
MslI	CAYNNNNRTG	1 cut(s)	464
MspR9I	CCNGG	1 cut(s)	552
MvaI	CCWGG	1 cut(s)	552
MvnI	CGCG	1 cut(s)	348
MwoI	GCNNNNNNNGC	8 cut(s)	160, 232, 671, 932, 941, 1039, 1045, 1054
NdeI	CATATG	1 cut(s)	392
NdeII	GATC	4 cut(s)	205, 298, 638, 679
NlaIII	CATG	3 cut(s)	25, 780, 841
NlaIV	GGNNCC	1 cut(s)	430
NmuCI	GTSAC	4 cut(s)	449, 457, 863, 961
NspI	RCATGY	1 cut(s)	780
PaeR7I	CTCGAG	1 cut(s)	255
PceI	AGGCCT	1 cut(s)	659
PciSI	GCTCTTC	1 cut(s)	1047
PcsI	WCGNNNNNNNCGW	1 cut(s)	223
PfeI	GAWTC	3 cut(s)	272, 744, 804
PflFI	GACNNNGTC	1 cut(s)	455
PkrI	GCNGC	6 cut(s)	10, 162, 775, 925, 988, 1041
PleI	GAGTC	2 cut(s)	57, 853
PpsI	GAGTC	2 cut(s)	57, 853
Psp124BI	GAGCTC	2 cut(s)	500, 1009
Psp6I	CCWGG	1 cut(s)	550
PspEI	GGTNACC	2 cut(s)	449, 961
PspGI	CCWGG	1 cut(s)	550
PspN4I	GGNNCC	1 cut(s)	430
PspXI	VCTCGAGB	1 cut(s)	255
PsuI	RGATCY	3 cut(s)	205, 298, 679
PsyI	GACNNNGTC	1 cut(s)	455
RsaI	GTAC	4 cut(s)	75, 239, 421, 908
RsaNI	GTAC	4 cut(s)	74, 238, 420, 907
RseI	CAYNNNNRTG	1 cut(s)	464
SacI	GAGCTC	2 cut(s)	500, 1009
SapI	GCTCTTC	1 cut(s)	1047
SatI	GCNGC	6 cut(s)	9, 161, 774, 924, 987, 1040
Sau3AI	GATC	4 cut(s)	205, 298, 638, 679
ScaI	AGTACT	3 cut(s)	75, 421, 908
SchI	GAGTC	2 cut(s)	58, 854
ScrFI	CCNGG	1 cut(s)	552
SduI	GDGCHC	2 cut(s)	500, 1009
SexAI	ACCWGGT	1 cut(s)	550
SfaNI	GCATC	1 cut(s)	376
SfcI	CTRYAG	1 cut(s)	294
Sfr274I	CTCGAG	1 cut(s)	255
SlaI	CTCGAG	1 cut(s)	255
SmiMI	CAYNNNNRTG	1 cut(s)	464
SmlI	CTYRAG	7 cut(s)	107, 140, 201, 255, 415, 423, 683
SmoI	CTYRAG	7 cut(s)	107, 140, 201, 255, 415, 423, 683
Sse9I	AATT	4 cut(s)	537, 572, 701, 952
SseBI	AGGCCT	1 cut(s)	659
SsiI	CCGC	1 cut(s)	160
SspMI	CTAG	4 cut(s)	44, 491, 912, 1087
SstI	GAGCTC	2 cut(s)	500, 1009
StuI	AGGCCT	1 cut(s)	659
StyD4I	CCNGG	1 cut(s)	550
TaaI	ACNGT	3 cut(s)	133, 634, 863
TaiI	ACGT	2 cut(s)	220, 322
TaqI	TCGA	7 cut(s)	256, 307, 343, 500, 706, 802, 977
TasI	AATT	4 cut(s)	537, 572, 701, 952
TatI	WGTACW	4 cut(s)	73, 237, 419, 906
TauI	GCSGC	1 cut(s)	163
TfiI	GAWTC	3 cut(s)	272, 744, 804
TscAI	CASTG	1 cut(s)	764
TseFI	GTSAC	4 cut(s)	449, 457, 863, 961
TseI	GCWGC	5 cut(s)	8, 773, 923, 986, 1039
Tsp45I	GTSAC	4 cut(s)	449, 457, 863, 961
TspDTI	ATGAA	8 cut(s)	17, 282, 463, 663, 704, 772, 843, 1031
TspRI	CASTG	1 cut(s)	764
Tth111I	GACNNNGTC	1 cut(s)	455
XapI	RAATTY	1 cut(s)	952
XceI	RCATGY	1 cut(s)	780
XcmI	CCANNNNNNNNNTGG	1 cut(s)	19
XhoI	CTCGAG	1 cut(s)	255
XspI	CTAG	4 cut(s)	44, 491, 912, 1087
ZrmI	AGTACT	3 cut(s)	75, 421, 908

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.