Rh6CG463700

cyclic nucleotide-gated ion channel

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Forward (+)
63659643 .. 63661887
2245 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG463700.1

Sequence Viewer

Length: 1509 bp
ATGAAGGCTGCCAGAACAAGCATGGAGTTGAAGAAAGATAAGCTAGTGAGGTTTTATAATGATGAGAAACAAGATGGTAATTTTTCCTGGGAAAAGAGTGACATTACCCAAAAACACTTAAAAGAGCCACTGTCTGGTGATAGAGCCAAGAAGACTACTAGATTTAGGGGGTTTAAGGTTTTCCCAGAGAACCATGAGCCACATCAGAAGAAAGTTCTTGATCCTGGGAGTGATATTTTCTTGAAATGGAACAGGATTTTTCTCATATCTTGCTTAGTAGCATTGTTCGTTGATCCACTGTTTTTCTACCTTCCTTCGGTACATAATGATGACAGTTCATCTTGTATGGCAACAGATTTGAACTTGGGAATTGTTGTGACATGTTTTCGTACTCTTGCCGACATGCTCTATCTGCTTCATATTTTCATCAAGTTGAGGACAGCTTATATATCACCAAAAACTAGAGTTTTTGGGAGGGGTGAACTTGTTATGGATCCCAAAAAGATTGCTAGAAGGTATCTGAGATCAGATTTCTTCGTAGATCTTATAGCTACACTGCCTCTCCCTCAGATTGTCATATGGTTCATCATACCTGCAGTTAAAAGCTCCAGTTCTGGCCATACCCATAATGCCCTTGTACTGATTGTTCTGCTCCAATATGTTCCTAGATTGTATCTCATTTTCCCACTAAGTTCTCAGATCATCAAAGCCACTGGTGTGGTCACAAAGACAGCTTGGGCCGGGGCTGCGTATAATCTCATACTCTACATGTTAGCTAGTCATGTCTTAGGTGCTTCATGGTACCTATTATCAATCGAACGGTATGCAACTTGCTGGAAGTCTCAATGCAGAAAAGAAGTTGACCCCATCAAGTGTTTTCTCAGCTACTTGGATTGTGGTTCTTTGAACAATGATGGACGCCTGCAGTGGATAAACAGTACTCATGTGTTTAGTAACTGCAACCCGGAGAACTCCATTGGTTTCAATTATGGCATATTTGAGAATGCACTGACCAACAATGTAGTCTCCTCCTCGTTTCTAGAGAAGTACTTGTATTGTCTTTGGTGGGGATTACAGAACTTGAGCTCCTATGGTCAGACTTTGACTACAAGCACATATATCGGTGAAACTTCTTTTGCTATACTCATTGCTATTTTGGGTCTGGTTCTGTTTGCACACTTAATTGGAAATATGCAGACCTACTTGCAATCTCTCACCGTGAGACTTGAGGAATGGAGGCTCAGGCGGCGAGACACAGAGGAGTGGATGAGACATAGGCAACTCCCTCAAGATCTGCAAGAACGTGTTAGGAGATTTGTGCAGTACAAGTGGCTTGCAACTCGAGGAGTTGATGAAGAATCCATCTTATGCGCCTTGCCTACAGATCTCCGTCGAGACATCCAACGTCATCTATGTTTAGACCTTGTTCGACGTGTAAGTGACTTCCTTGGTATTCTAATCCAGTGCTATAAGTCTTCCCCAAACCATGTTCTGATGACATATATGTAG

Protein Analysis

502

Amino Acids

58.12

Weight (kDa)

9.2

Isoelectric Point (pI)

43.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 83 - 408 5.3e-21 Ion transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 57
Acc36I ACCTGC 1 cut(s) 601
Acc65I GGTACC 1 cut(s) 801
AccB1I GGYRCC 1 cut(s) 801
AccB7I CCANNNNNTGG 1 cut(s) 134
AciI CCGC 1 cut(s) 1246
AclWI GGATC 4 cut(s) 215, 287, 488, 501
AcoI YGGCCR 1 cut(s) 616
AcyI GRCGYC 1 cut(s) 919
AfaI GTAC 7 cut(s) 321, 391, 639, 803, 940, 1049, 1325
AfiI CCNNNNNNNGG 2 cut(s) 134, 316
AflIII ACRYGT 4 cut(s) 380, 768, 1303, 1432
AgsI TTSAA 5 cut(s) 31, 244, 361, 907, 985
AjiI CACGTC 1 cut(s) 1433
AjnI CCWGG 2 cut(s) 86, 223
AleI CACNNNNGTG 1 cut(s) 716
AloI GAACNNNNNNTCC 2 cut(s) 1070, 1102
AluBI AGCT 8 cut(s) 43, 443, 551, 606, 734, 776, 885, 1086
AluI AGCT 8 cut(s) 43, 443, 551, 606, 734, 776, 885, 1086
Alw21I GWGCWC 1 cut(s) 1088
Alw26I GTCTC 6 cut(s) 846, 1030, 1216, 1245, 1264, 1389
AlwI GGATC 4 cut(s) 215, 287, 488, 501
Ama87I CYCGRG 1 cut(s) 1341
AoxI GGCC 2 cut(s) 616, 738
ApeKI GCWGC 2 cut(s) 8, 746
Asp718I GGTACC 1 cut(s) 801
AspLEI GCGC 1 cut(s) 1373
AspS9I GGNCC 1 cut(s) 738
AsuC2I CCSGG 2 cut(s) 742, 965
AsuHPI GGTGA 5 cut(s) 149, 444, 491, 1136, 1207
AvaI CYCGRG 1 cut(s) 1341
BalI TGGCCA 1 cut(s) 618
BamHI GGATCC 1 cut(s) 493
BanI GGYRCC 1 cut(s) 801
BanII GRGCYC 1 cut(s) 1088
BbsI GAAGAC 2 cut(s) 158, 1467
Bbv12I GWGCWC 1 cut(s) 1088
BbvI GCAGC 1 cut(s) 733
BccI CCATC 4 cut(s) 68, 875, 908, 1370
BcgI CGANNNNNNTGC 4 cut(s) 806, 840, 1102, 1136
BciT130I CCWGG 2 cut(s) 88, 225
BcnI CCSGG 2 cut(s) 742, 965
BcoDI GTCTC 6 cut(s) 846, 1030, 1216, 1245, 1264, 1389
BfaI CTAG 7 cut(s) 44, 159, 462, 510, 666, 777, 1040
BfmI CTRYAG 3 cut(s) 594, 923, 1380
BfuAI ACCTGC 1 cut(s) 601
BglII AGATCT 3 cut(s) 541, 1291, 1384
BisI GCNGC 3 cut(s) 9, 747, 1247
BlsI GCNGC 3 cut(s) 10, 748, 1248
BmcAI AGTACT 2 cut(s) 940, 1049
Bme1390I CCNGG 4 cut(s) 88, 225, 742, 965
BmeT110I CYCGRG 1 cut(s) 1341
BmgBI CACGTC 1 cut(s) 1433
BmgT120I GGNCC 1 cut(s) 738
BmiI GGNNCC 2 cut(s) 495, 803
BmrFI CCNGG 4 cut(s) 88, 225, 742, 965
BpiI GAAGAC 2 cut(s) 158, 1467
BpmI CTGGAG 1 cut(s) 592
Bpu10I CCTNAGC 1 cut(s) 1241
BpuEI CTTGAG 3 cut(s) 1102, 1247, 1272
BpuMI CCSGG 2 cut(s) 742, 965
BsaHI GRCGYC 1 cut(s) 919
BsaJI CCNNGG 4 cut(s) 87, 224, 741, 1447
BsaXI ACNNNNNCTCC 4 cut(s) 546, 576, 1070, 1100
Bsc4I CCNNNNNNNGG 2 cut(s) 134, 316
Bse1I ACTGG 3 cut(s) 609, 718, 1462
Bse3DI GCAATG 1 cut(s) 1146
BseBI CCWGG 2 cut(s) 88, 225
BseDI CCNNGG 4 cut(s) 87, 224, 741, 1447
BseGI GGATG 2 cut(s) 1272, 1398
BseLI CCNNNNNNNGG 2 cut(s) 134, 316
BseMI GCAATG 1 cut(s) 1146
BseMII CTCAG 5 cut(s) 512, 581, 710, 895, 1255
BseNI ACTGG 3 cut(s) 609, 718, 1462
BseRI GAGGAG 4 cut(s) 1018, 1021, 1274, 1359
BseXI GCAGC 1 cut(s) 733
BsgI GTGCAG 1 cut(s) 1340
BshFI GGCC 2 cut(s) 618, 740
BshNI GGYRCC 1 cut(s) 801
BsiHKAI GWGCWC 1 cut(s) 1088
BsiHKCI CYCGRG 1 cut(s) 1341
BsiSI CCGG 2 cut(s) 741, 965
BslI CCNNNNNNNGG 2 cut(s) 134, 316
BsmAI GTCTC 6 cut(s) 846, 1030, 1216, 1245, 1264, 1389
BsmI GAATGC 1 cut(s) 1009
BsnI GGCC 2 cut(s) 618, 740
BsoBI CYCGRG 1 cut(s) 1341
Bsp1286I GDGCHC 1 cut(s) 1088
Bsp143I GATC 8 cut(s) 220, 292, 493, 524, 541, 699, 1291, 1384
BspACI CCGC 1 cut(s) 1246
BspANI GGCC 2 cut(s) 618, 740
BspCNI CTCAG 5 cut(s) 513, 580, 709, 894, 1254
BspLI GGNNCC 2 cut(s) 495, 803
BspMAI CTGCAG 2 cut(s) 598, 927
BspMI ACCTGC 1 cut(s) 601
BspPI GGATC 4 cut(s) 215, 287, 488, 501
BspT107I GGYRCC 1 cut(s) 801
BsrDI GCAATG 1 cut(s) 1146
BsrI ACTGG 3 cut(s) 609, 718, 1462
BssECI CCNNGG 4 cut(s) 87, 224, 741, 1447
BssMI GATC 8 cut(s) 220, 292, 493, 524, 541, 699, 1291, 1384
BssNI GRCGYC 1 cut(s) 919
BssT1I CCWWGG 1 cut(s) 1447
Bst2UI CCWGG 2 cut(s) 88, 225
Bst4CI ACNGT 6 cut(s) 132, 300, 335, 822, 938, 1219
BstACI GRCGYC 1 cut(s) 919
BstC8I GCNNGC 2 cut(s) 923, 1335
BstDEI CTNAG 8 cut(s) 274, 521, 567, 689, 696, 787, 881, 1241
BstF5I GGATG 2 cut(s) 1272, 1398
BstHHI GCGC 1 cut(s) 1373
BstKTI GATC 8 cut(s) 223, 295, 496, 527, 544, 702, 1294, 1387
BstMAI GTCTC 6 cut(s) 846, 1030, 1216, 1245, 1264, 1389
BstMBI GATC 8 cut(s) 220, 292, 493, 524, 541, 699, 1291, 1384
BstMWI GCNNNNNNNGC 3 cut(s) 412, 746, 1246
BstNI CCWGG 2 cut(s) 88, 225
BstNSI RCATGY 3 cut(s) 384, 406, 772
BstSCI CCNGG 4 cut(s) 86, 223, 740, 963
BstSFI CTRYAG 3 cut(s) 594, 923, 1380
BstV1I GCAGC 1 cut(s) 733
BstV2I GAAGAC 2 cut(s) 158, 1467
BstX2I RGATCY 4 cut(s) 493, 541, 1291, 1384
BstXI CCANNNNNNTGG 1 cut(s) 718
BstYI RGATCY 4 cut(s) 493, 541, 1291, 1384
BsuRI GGCC 2 cut(s) 618, 740
BtrI CACGTC 1 cut(s) 1433
BtsCI GGATG 2 cut(s) 1272, 1398
BtsI GCAGTG 2 cut(s) 554, 932
BtsIMutI CAGTG 7 cut(s) 128, 296, 554, 711, 932, 1007, 1469
BveI ACCTGC 1 cut(s) 601
Cac8I GCNNGC 2 cut(s) 923, 1335
CfoI GCGC 1 cut(s) 1373
Cfr13I GGNCC 1 cut(s) 738
CseI GACGC 1 cut(s) 927
Csp6I GTAC 7 cut(s) 320, 390, 638, 802, 939, 1048, 1324
CviAII CATG 9 cut(s) 22, 194, 381, 403, 769, 782, 798, 944, 1487
CviQI GTAC 7 cut(s) 320, 390, 638, 802, 939, 1048, 1324
DdeI CTNAG 8 cut(s) 274, 521, 567, 689, 696, 787, 881, 1241
DpnI GATC 8 cut(s) 222, 294, 495, 526, 543, 701, 1293, 1386
DpnII GATC 8 cut(s) 220, 292, 493, 524, 541, 699, 1291, 1384
EaeI YGGCCR 1 cut(s) 616
Ecl136II GAGCTC 1 cut(s) 1086
Eco130I CCWWGG 1 cut(s) 1447
Eco24I GRGCYC 1 cut(s) 1088
Eco53kI GAGCTC 1 cut(s) 1086
Eco88I CYCGRG 1 cut(s) 1341
EcoICRI GAGCTC 1 cut(s) 1086
EcoRII CCWGG 2 cut(s) 86, 223
EcoT14I CCWWGG 1 cut(s) 1447
EcoT38I GRGCYC 1 cut(s) 1088
ErhI CCWWGG 1 cut(s) 1447
FaeI CATG 9 cut(s) 25, 197, 384, 406, 772, 785, 801, 947, 1490
FatI CATG 9 cut(s) 21, 193, 380, 402, 768, 781, 797, 943, 1486
FauNDI CATATG 1 cut(s) 578
Fnu4HI GCNGC 3 cut(s) 9, 747, 1247
FokI GGATG 2 cut(s) 1279, 1385
FriOI GRGCYC 1 cut(s) 1088
Fsp4HI GCNGC 3 cut(s) 9, 747, 1247
FspBI CTAG 7 cut(s) 44, 159, 462, 510, 666, 777, 1040
GlaI GCGC 1 cut(s) 1372
GluI GCNGC 3 cut(s) 9, 747, 1247
GsuI CTGGAG 1 cut(s) 592
HaeIII GGCC 2 cut(s) 618, 740
HapII CCGG 2 cut(s) 741, 965
HgaI GACGC 1 cut(s) 927
HhaI GCGC 1 cut(s) 1373
Hin1I GRCGYC 1 cut(s) 919
Hin1II CATG 9 cut(s) 25, 197, 384, 406, 772, 785, 801, 947, 1490
Hin6I GCGC 1 cut(s) 1371
HinP1I GCGC 1 cut(s) 1371
HincII GTYRAC 1 cut(s) 862
HindII GTYRAC 1 cut(s) 862
HinfI GANTC 1 cut(s) 1358
HpaII CCGG 2 cut(s) 741, 965
HphI GGTGA 5 cut(s) 149, 444, 491, 1136, 1207
Hpy166II GTNNAC 2 cut(s) 482, 862
Hpy188I TCNGA 7 cut(s) 207, 522, 529, 570, 699, 1098, 1494
Hpy188III TCNNGA 5 cut(s) 218, 241, 1040, 1289, 1394
Hpy8I GTNNAC 2 cut(s) 482, 862
Hpy99I CGWCG 2 cut(s) 1395, 1434
HpyAV CCTTC 3 cut(s) 320, 324, 507
HpyCH4III ACNGT 6 cut(s) 132, 300, 335, 822, 938, 1219
HpyCH4IV ACGT 3 cut(s) 1303, 1405, 1432
HpyF10VI GCNNNNNNNGC 3 cut(s) 412, 746, 1246
HpyF3I CTNAG 8 cut(s) 274, 521, 567, 689, 696, 787, 881, 1241
HpySE526I ACGT 3 cut(s) 1303, 1405, 1432
Hsp92I GRCGYC 1 cut(s) 919
Hsp92II CATG 9 cut(s) 25, 197, 384, 406, 772, 785, 801, 947, 1490
HspAI GCGC 1 cut(s) 1371
KpnI GGTACC 1 cut(s) 805
Kzo9I GATC 8 cut(s) 220, 292, 493, 524, 541, 699, 1291, 1384
LmnI GCTCC 3 cut(s) 611, 657, 1091
Lsp1109I GCAGC 1 cut(s) 733
MaeI CTAG 7 cut(s) 44, 159, 462, 510, 666, 777, 1040
MaeII ACGT 3 cut(s) 1303, 1405, 1432
MaeIII GTNAC 5 cut(s) 98, 376, 721, 953, 1439
MalI GATC 8 cut(s) 222, 294, 495, 526, 543, 701, 1293, 1386
MboI GATC 8 cut(s) 220, 292, 493, 524, 541, 699, 1291, 1384
MboII GAAGA 6 cut(s) 43, 163, 220, 526, 1367, 1467
MflI RGATCY 4 cut(s) 493, 541, 1291, 1384
MhlI GDGCHC 1 cut(s) 1088
MlsI TGGCCA 1 cut(s) 618
MluCI AATT 4 cut(s) 79, 369, 985, 1182
MluNI TGGCCA 1 cut(s) 618
MmeI TCCRAC 1 cut(s) 1426
Mox20I TGGCCA 1 cut(s) 618
MscI TGGCCA 1 cut(s) 618
MseI TTAA 4 cut(s) 119, 174, 600, 1181
MslI CAYNNNNRTG 2 cut(s) 327, 716
Msp20I TGGCCA 1 cut(s) 618
MspI CCGG 2 cut(s) 741, 965
MspR9I CCNGG 4 cut(s) 88, 225, 742, 965
Mva1269I GAATGC 1 cut(s) 1009
MvaI CCWGG 2 cut(s) 88, 225
MwoI GCNNNNNNNGC 3 cut(s) 412, 746, 1246
NciI CCSGG 2 cut(s) 742, 965
NdeI CATATG 1 cut(s) 578
NdeII GATC 8 cut(s) 220, 292, 493, 524, 541, 699, 1291, 1384
NlaIII CATG 9 cut(s) 25, 197, 384, 406, 772, 785, 801, 947, 1490
NlaIV GGNNCC 2 cut(s) 495, 803
NmuCI GTSAC 4 cut(s) 98, 376, 721, 1439
NspI RCATGY 3 cut(s) 384, 406, 772
OliI CACNNNNGTG 1 cut(s) 716
PaeR7I CTCGAG 1 cut(s) 1341
PciI ACATGT 2 cut(s) 380, 768
PctI GAATGC 1 cut(s) 1009
PfeI GAWTC 1 cut(s) 1358
PflMI CCANNNNNTGG 1 cut(s) 134
PkrI GCNGC 3 cut(s) 10, 748, 1248
PscI ACATGT 2 cut(s) 380, 768
PsiI TTATAA 1 cut(s) 57
Psp124BI GAGCTC 1 cut(s) 1088
Psp6I CCWGG 2 cut(s) 86, 223
PspGI CCWGG 2 cut(s) 86, 223
PspN4I GGNNCC 2 cut(s) 495, 803
PspPI GGNCC 1 cut(s) 738
PspXI VCTCGAGB 1 cut(s) 1341
PsrI GAACNNNNNNTAC 2 cut(s) 630, 662
PstI CTGCAG 2 cut(s) 598, 927
PsuI RGATCY 4 cut(s) 493, 541, 1291, 1384
RsaI GTAC 7 cut(s) 321, 391, 639, 803, 940, 1049, 1325
RsaNI GTAC 7 cut(s) 320, 390, 638, 802, 939, 1048, 1324
RseI CAYNNNNRTG 2 cut(s) 327, 716
SacI GAGCTC 1 cut(s) 1088
SaqAI TTAA 4 cut(s) 119, 174, 600, 1181
SatI GCNGC 3 cut(s) 9, 747, 1247
Sau3AI GATC 8 cut(s) 220, 292, 493, 524, 541, 699, 1291, 1384
Sau96I GGNCC 1 cut(s) 738
ScaI AGTACT 2 cut(s) 940, 1049
ScrFI CCNGG 4 cut(s) 88, 225, 742, 965
SduI GDGCHC 1 cut(s) 1088
SfcI CTRYAG 3 cut(s) 594, 923, 1380
Sfr274I CTCGAG 1 cut(s) 1341
SlaI CTCGAG 1 cut(s) 1341
SmiMI CAYNNNNRTG 2 cut(s) 327, 716
SmlI CTYRAG 4 cut(s) 1081, 1226, 1287, 1341
SmoI CTYRAG 4 cut(s) 1081, 1226, 1287, 1341
Sse9I AATT 4 cut(s) 79, 369, 985, 1182
SsiI CCGC 1 cut(s) 1246
SspMI CTAG 7 cut(s) 44, 159, 462, 510, 666, 777, 1040
SstI GAGCTC 1 cut(s) 1088
StyD4I CCNGG 4 cut(s) 86, 223, 740, 963
StyI CCWWGG 1 cut(s) 1447
TaaI ACNGT 6 cut(s) 132, 300, 335, 822, 938, 1219
TaiI ACGT 3 cut(s) 1306, 1408, 1435
TaqI TCGA 4 cut(s) 816, 1342, 1393, 1429
TasI AATT 4 cut(s) 79, 369, 985, 1182
TatI WGTACW 4 cut(s) 637, 938, 1047, 1323
TauI GCSGC 1 cut(s) 1249
TfiI GAWTC 1 cut(s) 1358
Tru1I TTAA 4 cut(s) 119, 174, 600, 1181
Tru9I TTAA 4 cut(s) 119, 174, 600, 1181
TscAI CASTG 7 cut(s) 135, 303, 561, 718, 932, 1014, 1469
TseFI GTSAC 4 cut(s) 98, 376, 721, 1439
TseI GCWGC 2 cut(s) 8, 746
Tsp45I GTSAC 4 cut(s) 98, 376, 721, 1439
TspDTI ATGAA 7 cut(s) 17, 327, 407, 415, 574, 786, 1368
TspGWI ACGGA 1 cut(s) 1379
TspRI CASTG 7 cut(s) 135, 303, 561, 718, 932, 1014, 1469
Van91I CCANNNNNTGG 1 cut(s) 134
XbaI TCTAGA 1 cut(s) 1039
XceI RCATGY 3 cut(s) 384, 406, 772
XcmI CCANNNNNNNNNTGG 1 cut(s) 19
XhoI CTCGAG 1 cut(s) 1341
XspI CTAG 7 cut(s) 44, 159, 462, 510, 666, 777, 1040
ZrmI AGTACT 2 cut(s) 940, 1049
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.