Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0011660

Physical Location & Seq

Genomic Coordinates Forward (+)

63662037 .. 63662759

Gene Structure 723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG463800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGATGGTCAGCTACTTGATGCCATATGCGAGCGTTTGGTATCCTCCTTGAGTACTCAAGGCACCTACATTGTTCGTGAAGGTGACCCCGTCACCGAGATGTTATTCATTATCCGAGGAAAGTTAGAGAGCTCGACAACAAATGGAGGTCGGACAGGTTTCTTCAACTCAATTACTTTGAGACCTGGTGATTTTTGTGGCGAAGAATTGCTTGCTTGGGCATTGCTTCCCAAATCTACTCTCAACTTGCCTTCTTCTACAAGAACTGTTAGATCACTTGATGAAGTAGAGGCCTTTGCACTTAGAGCAGAAGATCTCAAGTTTGTTGCTAATCAGTTCCGACGACTTCATAGCAAGAAGTTGCAACACACATTCCGATTCTACTCTTACCACTGGAGAACTTGGGCTGCATGTTTCATTCAGGTTGCGTGGCGTCGATTCAAGAAGAGATTGTTGGCAAAGAACCTTAGCATGGTTGAGTCATTTTCATATAACTGTGACAACCAAGAGGATGATGAGACCGAACAAGAAAAGGAGGAGTACTCTAGGAGTAATGCAGCTTCAAATGCTTCACAAGCGAGACAGAATTTGGGGGTCACCATTCTGGCTTCGAGGTTTGCTGCAAACACGAGAAGAGGAGCTCAGAAAATGAAGGATGTTCAGTTGCCCAAGCTGCAAAAGCCTGAAGAGCCAGACTTCTCAGTAGAGCCAGAAGATGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

240

Amino Acids

27.46

Weight (kDa)

6.85

Isoelectric Point (pI)

47.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
cNMP_binding	PF00027	20 - 109	1.3e-08	Cyclic nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011660)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g36620
malus_domestica	MD15G1106000.v1.1
prunus_persica	Prupe.1G457900_v2.0.a1
pyrus_communis	pycom15g09630 pycom15g09650
rosa_chinensis	RchiOBHm_Chr6g0305181
rosa_laevigata	RLG00000010910
rosa_multiflora	Rmu_sc0000061.1_g000007 Rmu_sc0000061.1_g000010
rosa_roxburghii	Rroxscaffold_7G00163060 Rroxscaffold_7G00163070
rosa_rugosa	Rorug06G0338300
rosa_samantha	Rh6AG450000 Rh6BG451400 Rh6CG463700 Rh6CG463800 Rh6DG450600
rosa_wichuraiana	Rw6G039200 Rw6G039220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	62
AcsI	RAATTY	1 cut(s)	586
AcuI	CTGAAG	1 cut(s)	705
AcyI	GRCGYC	1 cut(s)	433
AfaI	GTAC	2 cut(s)	55, 542
AfiI	CCNNNNNNNGG	1 cut(s)	472
AgsI	TTSAA	3 cut(s)	166, 442, 564
AjnI	CCWGG	1 cut(s)	184
AjuI	GAANNNNNNNTTGG	2 cut(s)	437, 469
AluBI	AGCT	5 cut(s)	13, 132, 560, 641, 673
AluI	AGCT	5 cut(s)	13, 132, 560, 641, 673
Alw21I	GWGCWC	2 cut(s)	134, 643
Alw26I	GTCTC	3 cut(s)	175, 512, 574
AoxI	GGCC	1 cut(s)	291
ApeKI	GCWGC	4 cut(s)	407, 557, 620, 673
ApoI	RAATTY	1 cut(s)	586
AsuHPI	GGTGA	4 cut(s)	85, 95, 200, 589
BanI	GGYRCC	1 cut(s)	62
BanII	GRGCYC	2 cut(s)	134, 643
BarI	GAAGNNNNNNTAC	2 cut(s)	544, 576
BauI	CACGAG	1 cut(s)	628
Bbv12I	GWGCWC	2 cut(s)	134, 643
BbvI	GCAGC	4 cut(s)	394, 569, 607, 660
BciT130I	CCWGG	1 cut(s)	186
BciVI	GTATCC	1 cut(s)	52
BcoDI	GTCTC	3 cut(s)	175, 512, 574
BfaI	CTAG	2 cut(s)	546, 721
BfuI	GTATCC	1 cut(s)	52
BglII	AGATCT	1 cut(s)	313
BisI	GCNGC	4 cut(s)	408, 558, 621, 674
BlsI	GCNGC	4 cut(s)	409, 559, 622, 675
BmcAI	AGTACT	2 cut(s)	55, 542
Bme1390I	CCNGG	1 cut(s)	186
BmiI	GGNNCC	1 cut(s)	64
BmrFI	CCNGG	1 cut(s)	186
BmsI	GCATC	1 cut(s)	10
BplI	GAGNNNNNCTC	2 cut(s)	527, 559
BpmI	CTGGAG	1 cut(s)	415
Bpu10I	CCTNAGC	1 cut(s)	467
BpuEI	CTTGAG	3 cut(s)	42, 70, 302
BsaHI	GRCGYC	1 cut(s)	433
BsaI	GGTCTC	2 cut(s)	175, 512
BsaJI	CCNNGG	1 cut(s)	115
Bsc4I	CCNNNNNNNGG	1 cut(s)	472
Bse1I	ACTGG	1 cut(s)	398
Bse3DI	GCAATG	1 cut(s)	221
BseBI	CCWGG	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	115
BseGI	GGATG	3 cut(s)	10, 517, 661
BseLI	CCNNNNNNNGG	1 cut(s)	472
BseMI	GCAATG	1 cut(s)	221
BseMII	CTCAG	2 cut(s)	656, 714
BseNI	ACTGG	1 cut(s)	398
BseRI	GAGGAG	2 cut(s)	551, 651
BseXI	GCAGC	4 cut(s)	394, 569, 607, 660
BshFI	GGCC	1 cut(s)	293
BshNI	GGYRCC	1 cut(s)	62
BsiHKAI	GWGCWC	2 cut(s)	134, 643
BslI	CCNNNNNNNGG	1 cut(s)	472
BsmAI	GTCTC	3 cut(s)	175, 512, 574
BsnI	GGCC	1 cut(s)	293
Bso31I	GGTCTC	2 cut(s)	175, 512
Bsp1286I	GDGCHC	2 cut(s)	134, 643
Bsp143I	GATC	2 cut(s)	272, 313
BspANI	GGCC	1 cut(s)	293
BspCNI	CTCAG	2 cut(s)	655, 713
BspLI	GGNNCC	1 cut(s)	64
BspQI	GCTCTTC	1 cut(s)	681
BspT107I	GGYRCC	1 cut(s)	62
BspTNI	GGTCTC	2 cut(s)	175, 512
BsrDI	GCAATG	1 cut(s)	221
BsrI	ACTGG	1 cut(s)	398
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	2 cut(s)	272, 313
BssNI	GRCGYC	1 cut(s)	433
BssSI	CACGAG	1 cut(s)	628
Bst2BI	CACGAG	1 cut(s)	628
Bst2UI	CCWGG	1 cut(s)	186
Bst4CI	ACNGT	2 cut(s)	268, 497
Bst6I	CTCTTC	3 cut(s)	440, 628, 681
BstACI	GRCGYC	1 cut(s)	433
BstC8I	GCNNGC	2 cut(s)	32, 213
BstDEI	CTNAG	4 cut(s)	302, 467, 642, 700
BstEII	GGTNACC	2 cut(s)	83, 595
BstF5I	GGATG	3 cut(s)	10, 517, 661
BstKTI	GATC	2 cut(s)	275, 316
BstMAI	GTCTC	3 cut(s)	175, 512, 574
BstMBI	GATC	2 cut(s)	272, 313
BstMWI	GCNNNNNNNGC	6 cut(s)	305, 566, 575, 673, 679, 688
BstNI	CCWGG	1 cut(s)	186
BstNSI	RCATGY	1 cut(s)	414
BstPI	GGTNACC	2 cut(s)	83, 595
BstSCI	CCNGG	1 cut(s)	184
BstV1I	GCAGC	4 cut(s)	394, 569, 607, 660
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
BsuI	GTATCC	1 cut(s)	52
BsuRI	GGCC	1 cut(s)	293
BtsCI	GGATG	3 cut(s)	10, 517, 661
BtsIMutI	CAGTG	1 cut(s)	391
Cac8I	GCNNGC	2 cut(s)	32, 213
CseI	GACGC	1 cut(s)	422
CsiI	ACCWGGT	1 cut(s)	184
Csp6I	GTAC	2 cut(s)	54, 541
CviAII	CATG	2 cut(s)	411, 472
CviQI	GTAC	2 cut(s)	54, 541
DdeI	CTNAG	4 cut(s)	302, 467, 642, 700
DpnI	GATC	2 cut(s)	274, 315
DpnII	GATC	2 cut(s)	272, 313
Eam1104I	CTCTTC	3 cut(s)	440, 628, 681
EarI	CTCTTC	3 cut(s)	440, 628, 681
Ecl136II	GAGCTC	2 cut(s)	132, 641
Eco147I	AGGCCT	1 cut(s)	293
Eco24I	GRGCYC	2 cut(s)	134, 643
Eco31I	GGTCTC	2 cut(s)	175, 512
Eco53kI	GAGCTC	2 cut(s)	132, 641
Eco57I	CTGAAG	1 cut(s)	705
Eco91I	GGTNACC	2 cut(s)	83, 595
EcoICRI	GAGCTC	2 cut(s)	132, 641
EcoO65I	GGTNACC	2 cut(s)	83, 595
EcoRII	CCWGG	1 cut(s)	184
EcoT38I	GRGCYC	2 cut(s)	134, 643
FaeI	CATG	2 cut(s)	414, 475
FaiI	YATR	7 cut(s)	26, 28, 351, 412, 473, 490, 492
FalI	AAGNNNNNCTT	2 cut(s)	195, 227
FatI	CATG	2 cut(s)	410, 471
FauNDI	CATATG	1 cut(s)	26
Fnu4HI	GCNGC	4 cut(s)	408, 558, 621, 674
FokI	GGATG	3 cut(s)	17, 524, 668
FriOI	GRGCYC	2 cut(s)	134, 643
Fsp4HI	GCNGC	4 cut(s)	408, 558, 621, 674
FspBI	CTAG	2 cut(s)	546, 721
GluI	GCNGC	4 cut(s)	408, 558, 621, 674
GsuI	CTGGAG	1 cut(s)	415
HaeIII	GGCC	1 cut(s)	293
HgaI	GACGC	1 cut(s)	422
Hin1I	GRCGYC	1 cut(s)	433
Hin1II	CATG	2 cut(s)	414, 475
HinfI	GANTC	3 cut(s)	378, 438, 479
HphI	GGTGA	4 cut(s)	85, 95, 200, 589
Hpy188I	TCNGA	5 cut(s)	116, 153, 341, 377, 645
Hpy188III	TCNNGA	2 cut(s)	77, 442
Hpy99I	CGWCG	2 cut(s)	345, 438
HpyAV	CCTTC	3 cut(s)	74, 261, 646
HpyCH4III	ACNGT	2 cut(s)	268, 497
HpyCH4V	TGCA	6 cut(s)	299, 364, 410, 557, 623, 676
HpyF10VI	GCNNNNNNNGC	6 cut(s)	305, 566, 575, 673, 679, 688
HpyF3I	CTNAG	4 cut(s)	302, 467, 642, 700
Hsp92I	GRCGYC	1 cut(s)	433
Hsp92II	CATG	2 cut(s)	414, 475
Kzo9I	GATC	2 cut(s)	272, 313
LguI	GCTCTTC	1 cut(s)	681
LmnI	GCTCC	1 cut(s)	638
LpnPI	CCDG	8 cut(s)	141, 171, 198, 379, 407, 590, 696, 705
Lsp1109I	GCAGC	4 cut(s)	394, 569, 607, 660
LweI	GCATC	1 cut(s)	10
MabI	ACCWGGT	1 cut(s)	184
MaeI	CTAG	2 cut(s)	546, 721
MaeIII	GTNAC	4 cut(s)	83, 91, 497, 595
MalI	GATC	2 cut(s)	274, 315
MboI	GATC	2 cut(s)	272, 313
MboII	GAAGA	7 cut(s)	154, 215, 246, 323, 457, 645, 698
MflI	RGATCY	1 cut(s)	313
MhlI	GDGCHC	2 cut(s)	134, 643
MluCI	AATT	3 cut(s)	171, 206, 586
MlyI	GAGTC	1 cut(s)	488
MmeI	TCCRAC	2 cut(s)	131, 364
MnlI	CCTC	8 cut(s)	55, 110, 140, 283, 502, 529, 606, 629
MslI	CAYNNNNRTG	1 cut(s)	98
MspR9I	CCNGG	1 cut(s)	186
MvaI	CCWGG	1 cut(s)	186
MwoI	GCNNNNNNNGC	6 cut(s)	305, 566, 575, 673, 679, 688
NdeI	CATATG	1 cut(s)	26
NdeII	GATC	2 cut(s)	272, 313
NlaIII	CATG	2 cut(s)	414, 475
NlaIV	GGNNCC	1 cut(s)	64
NmuCI	GTSAC	4 cut(s)	83, 91, 497, 595
NspI	RCATGY	1 cut(s)	414
PceI	AGGCCT	1 cut(s)	293
PciSI	GCTCTTC	1 cut(s)	681
PfeI	GAWTC	2 cut(s)	378, 438
PflFI	GACNNNGTC	1 cut(s)	89
PkrI	GCNGC	4 cut(s)	409, 559, 622, 675
PleI	GAGTC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	487
Psp124BI	GAGCTC	2 cut(s)	134, 643
Psp6I	CCWGG	1 cut(s)	184
PspEI	GGTNACC	2 cut(s)	83, 595
PspGI	CCWGG	1 cut(s)	184
PspN4I	GGNNCC	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	313
PsyI	GACNNNGTC	1 cut(s)	89
RsaI	GTAC	2 cut(s)	55, 542
RsaNI	GTAC	2 cut(s)	54, 541
RseI	CAYNNNNRTG	1 cut(s)	98
SacI	GAGCTC	2 cut(s)	134, 643
SapI	GCTCTTC	1 cut(s)	681
SatI	GCNGC	4 cut(s)	408, 558, 621, 674
Sau3AI	GATC	2 cut(s)	272, 313
ScaI	AGTACT	2 cut(s)	55, 542
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	1 cut(s)	186
SduI	GDGCHC	2 cut(s)	134, 643
SexAI	ACCWGGT	1 cut(s)	184
SfaNI	GCATC	1 cut(s)	10
SmiMI	CAYNNNNRTG	1 cut(s)	98
SmlI	CTYRAG	3 cut(s)	49, 57, 317
SmoI	CTYRAG	3 cut(s)	49, 57, 317
Sse9I	AATT	3 cut(s)	171, 206, 586
SseBI	AGGCCT	1 cut(s)	293
SspMI	CTAG	2 cut(s)	546, 721
SstI	GAGCTC	2 cut(s)	134, 643
StuI	AGGCCT	1 cut(s)	293
StyD4I	CCNGG	1 cut(s)	184
TaaI	ACNGT	2 cut(s)	268, 497
TaqI	TCGA	3 cut(s)	134, 436, 611
TaqII	GACCGA	1 cut(s)	536
TasI	AATT	3 cut(s)	171, 206, 586
TatI	WGTACW	2 cut(s)	53, 540
TfiI	GAWTC	2 cut(s)	378, 438
TscAI	CASTG	1 cut(s)	398
TseFI	GTSAC	4 cut(s)	83, 91, 497, 595
TseI	GCWGC	4 cut(s)	407, 557, 620, 673
Tsp45I	GTSAC	4 cut(s)	83, 91, 497, 595
TspDTI	ATGAA	6 cut(s)	97, 297, 338, 406, 477, 665
TspRI	CASTG	1 cut(s)	398
Tth111I	GACNNNGTC	1 cut(s)	89
XapI	RAATTY	1 cut(s)	586
XceI	RCATGY	1 cut(s)	414
XspI	CTAG	2 cut(s)	546, 721
ZrmI	AGTACT	2 cut(s)	55, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.