RLG00000011102

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0018229
Physical Location & Seq
Reverse (-)
6831304 .. 6832179
876 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011102

Sequence Viewer

Length: 444 bp
ATGTTGGTAGCAGTGGCAGAGCTGTCTCTTCTCCGCTGCTCTCACCTGTCAGCTCCACCAGTTGGAATTGACGTGATTCGGATTGACACCGATGATTATCACCAGGAGGAGGAGGAGGTTCCTATGATTGTTGAGAATCAAGATTCCTGGTCGGATTGCCCCAAATCAAATTCCTCCGATACCGATTTCGATTCCGATTCCAACTCCTGTGAGCAGAATGATGAAGATCCGAAAGTGAATGATGTGAGTGAGGAGTACGAGAGTATTGTCAAGAGCTTTGCTGTGGGTATGGGATCGGCAGGCGGAGTTACGGAGGTTGTGGCGGTGCACAAGAAATCGATTTCTGGATTGACCGTGATGTACTTGAATATTAATAACCTGAAAATGAAGGAGAATAACGACATCGGAGGCGACGGCGGCAGTGGTTATGTGAGGGCGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

15.92

Weight (kDa)

4.18

Isoelectric Point (pI)

46.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 62
AciI CCGC 4 cut(s) 34, 303, 323, 417
AclWI GGATC 2 cut(s) 221, 301
AcsI RAATTY 1 cut(s) 169
AfaI GTAC 2 cut(s) 257, 362
AfiI CCNNNNNNNGG 2 cut(s) 62, 109
AgsI TTSAA 1 cut(s) 367
AjiI CACGTC 1 cut(s) 73
AjnI CCWGG 2 cut(s) 102, 146
AluBI AGCT 3 cut(s) 22, 53, 276
AluI AGCT 3 cut(s) 22, 53, 276
Alw21I GWGCWC 1 cut(s) 330
Alw26I GTCTC 1 cut(s) 30
Alw44I GTGCAC 1 cut(s) 326
AlwI GGATC 2 cut(s) 221, 301
ApaLI GTGCAC 1 cut(s) 326
ApeKI GCWGC 1 cut(s) 36
ApoI RAATTY 1 cut(s) 169
AseI ATTAAT 1 cut(s) 372
AsuHPI GGTGA 2 cut(s) 35, 92
BaeGI GKGCMC 1 cut(s) 330
Bbv12I GWGCWC 1 cut(s) 330
BbvI GCAGC 1 cut(s) 23
BceAI ACGGC 1 cut(s) 430
BciT130I CCWGG 2 cut(s) 104, 148
BcoDI GTCTC 1 cut(s) 30
BfaI CTAG 1 cut(s) 442
BisI GCNGC 2 cut(s) 37, 418
BlsI GCNGC 2 cut(s) 38, 419
Bme1390I CCNGG 2 cut(s) 104, 148
BmgBI CACGTC 1 cut(s) 73
BmiI GGNNCC 1 cut(s) 120
BmrFI CCNGG 2 cut(s) 104, 148
Bsa29I ATCGAT 1 cut(s) 338
BsaBI GATNNNNATC 2 cut(s) 96, 225
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 109
Bse1I ACTGG 1 cut(s) 59
Bse8I GATNNNNATC 2 cut(s) 96, 225
BseBI CCWGG 2 cut(s) 104, 148
BseCI ATCGAT 1 cut(s) 338
BseJI GATNNNNATC 2 cut(s) 96, 225
BseLI CCNNNNNNNGG 2 cut(s) 62, 109
BseNI ACTGG 1 cut(s) 59
BseRI GAGGAG 4 cut(s) 122, 125, 128, 266
BseSI GKGCMC 1 cut(s) 330
BseXI GCAGC 1 cut(s) 23
BshVI ATCGAT 1 cut(s) 338
BsiHKAI GWGCWC 1 cut(s) 330
BslI CCNNNNNNNGG 2 cut(s) 62, 109
BsmAI GTCTC 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 330
Bsp143I GATC 2 cut(s) 226, 293
BspACI CCGC 4 cut(s) 34, 303, 323, 417
BspDI ATCGAT 1 cut(s) 338
BspLI GGNNCC 1 cut(s) 120
BspPI GGATC 2 cut(s) 221, 301
BsrI ACTGG 1 cut(s) 59
BssMI GATC 2 cut(s) 226, 293
Bst2UI CCWGG 2 cut(s) 104, 148
Bst4CI ACNGT 1 cut(s) 355
Bst6I CTCTTC 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 301
BstKTI GATC 2 cut(s) 229, 296
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 2 cut(s) 226, 293
BstMWI GCNNNNNNNGC 1 cut(s) 417
BstNI CCWGG 2 cut(s) 104, 148
BstSCI CCNGG 2 cut(s) 102, 146
BstSLI GKGCMC 1 cut(s) 330
BstV1I GCAGC 1 cut(s) 23
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
Bsu15I ATCGAT 1 cut(s) 338
BsuTUI ATCGAT 1 cut(s) 338
BtrI CACGTC 1 cut(s) 73
BtsI GCAGTG 2 cut(s) 18, 427
BtsIMutI CAGTG 2 cut(s) 18, 427
Cac8I GCNNGC 1 cut(s) 301
ClaI ATCGAT 1 cut(s) 338
Csp6I GTAC 2 cut(s) 256, 361
CviJI RGCY 3 cut(s) 22, 53, 276
CviKI_1 RGCY 3 cut(s) 22, 53, 276
CviQI GTAC 2 cut(s) 256, 361
DpnI GATC 2 cut(s) 228, 295
DpnII GATC 2 cut(s) 226, 293
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
EciI GGCGGA 1 cut(s) 318
EcoRII CCWGG 2 cut(s) 102, 146
FaiI YATR 3 cut(s) 125, 290, 429
Fnu4HI GCNGC 2 cut(s) 37, 418
Fsp4HI GCNGC 2 cut(s) 37, 418
FspBI CTAG 1 cut(s) 442
GluI GCNGC 2 cut(s) 37, 418
HinfI GANTC 5 cut(s) 76, 136, 143, 191, 197
HphI GGTGA 2 cut(s) 35, 92
Hpy166II GTNNAC 1 cut(s) 328
Hpy188I TCNGA 6 cut(s) 81, 154, 178, 196, 231, 407
Hpy188III TCNNGA 3 cut(s) 140, 271, 345
Hpy8I GTNNAC 1 cut(s) 328
Hpy99I CGWCG 1 cut(s) 416
HpyAV CCTTC 1 cut(s) 382
HpyCH4III ACNGT 1 cut(s) 355
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 1 cut(s) 328
HpyF10VI GCNNNNNNNGC 1 cut(s) 417
HpySE526I ACGT 1 cut(s) 72
Kzo9I GATC 2 cut(s) 226, 293
LmnI GCTCC 1 cut(s) 58
Lsp1109I GCAGC 1 cut(s) 23
MaeI CTAG 1 cut(s) 442
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 1 cut(s) 307
MalI GATC 2 cut(s) 228, 295
MboI GATC 2 cut(s) 226, 293
MboII GAAGA 2 cut(s) 20, 236
MflI RGATCY 1 cut(s) 226
MhlI GDGCHC 1 cut(s) 330
MluCI AATT 2 cut(s) 66, 169
MmeI TCCRAC 3 cut(s) 43, 132, 225
MnlI CCTC 9 cut(s) 100, 103, 106, 109, 184, 244, 307, 401, 426
MseI TTAA 1 cut(s) 372
MspA1I CMGCKG 1 cut(s) 36
MspR9I CCNGG 2 cut(s) 104, 148
MvaI CCWGG 2 cut(s) 104, 148
MwoI GCNNNNNNNGC 1 cut(s) 417
NdeII GATC 2 cut(s) 226, 293
NlaIV GGNNCC 1 cut(s) 120
PfeI GAWTC 5 cut(s) 76, 136, 143, 191, 197
PflMI CCANNNNNTGG 1 cut(s) 62
PkrI GCNGC 2 cut(s) 38, 419
PshBI ATTAAT 1 cut(s) 372
Psp6I CCWGG 2 cut(s) 102, 146
PspGI CCWGG 2 cut(s) 102, 146
PspN4I GGNNCC 1 cut(s) 120
PsuI RGATCY 1 cut(s) 226
RsaI GTAC 2 cut(s) 257, 362
RsaNI GTAC 2 cut(s) 256, 361
SaqAI TTAA 1 cut(s) 372
SatI GCNGC 2 cut(s) 37, 418
Sau3AI GATC 2 cut(s) 226, 293
ScrFI CCNGG 2 cut(s) 104, 148
SduI GDGCHC 1 cut(s) 330
SetI ASST 8 cut(s) 24, 48, 55, 75, 120, 278, 318, 381
Sse9I AATT 2 cut(s) 66, 169
SsiI CCGC 4 cut(s) 34, 303, 323, 417
SspI AATATT 1 cut(s) 370
SspMI CTAG 1 cut(s) 442
StyD4I CCNGG 2 cut(s) 102, 146
TaaI ACNGT 1 cut(s) 355
TaiI ACGT 1 cut(s) 75
TaqI TCGA 2 cut(s) 189, 338
TasI AATT 2 cut(s) 66, 169
TatI WGTACW 1 cut(s) 360
TauI GCSGC 1 cut(s) 420
TfiI GAWTC 5 cut(s) 76, 136, 143, 191, 197
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TscAI CASTG 2 cut(s) 18, 427
TseI GCWGC 1 cut(s) 36
TspDTI ATGAA 2 cut(s) 237, 401
TspGWI ACGGA 1 cut(s) 326
TspRI CASTG 2 cut(s) 18, 427
Van91I CCANNNNNTGG 1 cut(s) 62
VneI GTGCAC 1 cut(s) 326
VspI ATTAAT 1 cut(s) 372
XapI RAATTY 1 cut(s) 169
XspI CTAG 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.