Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0018229

Physical Location & Seq

Genomic Coordinates Reverse (-)

53506682 .. 53510673

Gene Structure 3992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030025

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCAATAAGACCAGCTGCTGAACTACTTCTCACACTTGCTAAATATAAGCATATGAGTACCCCAAGGCTTGATGCTATAAAATGTTTTATGTGGCAAATATATAAGGAAGTTGAGAAGTTTGCTTATCAGAATGGAGCAAAGGTGGCTATTGTTTATGGTGGAGCGCCAATGGGTCAGCAGGAGGAGGAGGTTCCTATGATCGTTGAGGATCAAGATTCTGGGTTGGATCGCCCGAATCGAATTCCTCCGATTCCGACTCCTGAGTACGAGAGTATTGTCAAGAGCTTTGCTGTGGGTATGGGATTGGTGGGCGGAGTTACGGAGGTTGTGGCGGTGCATAAGAAATCGATTTCTGGGCTGACAGCGCTGTACTTGAATATTAATAGCCTGAAAAATGAAGGAGAAGAACGACACCGGCGGTGGTGGGTATGTGAGGGCAGACCAGATAGATCTGAAGAGCTTGGACGAGCAGCTTTAGAAGCATCTGAGCAGGGCATGGACTATGGAGAAGAACAAGAACAGAGACCAGCGGGAACAACAAATCAGAATATTAGATTAGCCACCACCGCCACCTCCTCAACCAGCCCTTCTTCCCAGTTGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04622 ko05161 ko05203 map04622 map05161 map05203

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

203

Amino Acids

22.37

Weight (kDa)

5.36

Isoelectric Point (pI)

51.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018229)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000011102 RLG00000030025
rosa_multiflora	Rmu_sc0001839.1_g000014 Rmu_sc0004514.1_g000021 Rmu_sc0008320.1_g000002 Rmu_sc0014034.1_g000002
rosa_samantha	Rh2DG358600 Rh5BG080300 Rh5DG526300
rosa_wichuraiana	Rw0G009170 Rw7G028350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	315, 335, 421, 533, 570
AclWI	GGATC	2 cut(s)	219, 237
AcsI	RAATTY	1 cut(s)	243
AcuI	CTGAAG	1 cut(s)	477
AfaI	GTAC	3 cut(s)	61, 269, 374
AfeI	AGCGCT	1 cut(s)	369
AgsI	TTSAA	2 cut(s)	379, 604
AluBI	AGCT	4 cut(s)	17, 288, 463, 476
AluI	AGCT	4 cut(s)	17, 288, 463, 476
Alw26I	GTCTC	1 cut(s)	520
AlwI	GGATC	2 cut(s)	219, 237
AlwNI	CAGNNNCTG	1 cut(s)	20
Aor51HI	AGCGCT	1 cut(s)	369
ApeKI	GCWGC	2 cut(s)	17, 473
ApoI	RAATTY	1 cut(s)	243
AseI	ATTAAT	1 cut(s)	384
Asp700I	GAANNNNTTC	1 cut(s)	27
AspLEI	GCGC	2 cut(s)	169, 370
BbvI	GCAGC	2 cut(s)	4, 485
BcoDI	GTCTC	1 cut(s)	520
BfoI	RGCGCY	2 cut(s)	170, 371
BglII	AGATCT	1 cut(s)	452
BisI	GCNGC	2 cut(s)	18, 474
BlsI	GCNGC	2 cut(s)	19, 475
BmiI	GGNNCC	1 cut(s)	195
BmrI	ACTGGG	1 cut(s)	592
BmsI	GCATC	2 cut(s)	64, 494
BmuI	ACTGGG	1 cut(s)	592
Bsa29I	ATCGAT	1 cut(s)	350
BsaI	GGTCTC	1 cut(s)	520
BsaJI	CCNNGG	1 cut(s)	65
BsaXI	ACNNNNNCTCC	2 cut(s)	129, 159
Bse118I	RCCGGY	1 cut(s)	417
Bse1I	ACTGG	1 cut(s)	598
BseCI	ATCGAT	1 cut(s)	350
BseDI	CCNNGG	1 cut(s)	65
BseMII	CTCAG	2 cut(s)	255, 480
BseNI	ACTGG	1 cut(s)	598
BseRI	GAGGAG	3 cut(s)	200, 203, 568
BseXI	GCAGC	2 cut(s)	4, 485
BshVI	ATCGAT	1 cut(s)	350
BsiSI	CCGG	1 cut(s)	418
BsmAI	GTCTC	1 cut(s)	520
Bso31I	GGTCTC	1 cut(s)	520
Bsp143I	GATC	4 cut(s)	201, 211, 229, 452
BspACI	CCGC	5 cut(s)	315, 335, 421, 533, 570
BspCNI	CTCAG	2 cut(s)	256, 481
BspDI	ATCGAT	1 cut(s)	350
BspLI	GGNNCC	1 cut(s)	195
BspPI	GGATC	2 cut(s)	219, 237
BspQI	GCTCTTC	1 cut(s)	453
BspTNI	GGTCTC	1 cut(s)	520
BsrFI	RCCGGY	1 cut(s)	417
BsrI	ACTGG	1 cut(s)	598
BssAI	RCCGGY	1 cut(s)	417
BssECI	CCNNGG	1 cut(s)	65
BssMI	GATC	4 cut(s)	201, 211, 229, 452
BssT1I	CCWWGG	1 cut(s)	65
Bst6I	CTCTTC	1 cut(s)	453
BstDEI	CTNAG	2 cut(s)	264, 489
BstH2I	RGCGCY	2 cut(s)	170, 371
BstHHI	GCGC	2 cut(s)	169, 370
BstKTI	GATC	4 cut(s)	204, 214, 232, 455
BstMAI	GTCTC	1 cut(s)	520
BstMBI	GATC	4 cut(s)	201, 211, 229, 452
BstMWI	GCNNNNNNNGC	4 cut(s)	146, 367, 482, 569
BstV1I	GCAGC	2 cut(s)	4, 485
BstX2I	RGATCY	1 cut(s)	452
BstYI	RGATCY	1 cut(s)	452
Bsu15I	ATCGAT	1 cut(s)	350
BsuTUI	ATCGAT	1 cut(s)	350
CaiI	CAGNNNCTG	1 cut(s)	20
CfoI	GCGC	2 cut(s)	169, 370
Cfr10I	RCCGGY	1 cut(s)	417
ClaI	ATCGAT	1 cut(s)	350
Csp6I	GTAC	3 cut(s)	60, 268, 373
CviAII	CATG	1 cut(s)	499
CviQI	GTAC	3 cut(s)	60, 268, 373
DdeI	CTNAG	2 cut(s)	264, 489
DpnI	GATC	4 cut(s)	203, 213, 231, 454
DpnII	GATC	4 cut(s)	201, 211, 229, 452
Eam1104I	CTCTTC	1 cut(s)	453
EarI	CTCTTC	1 cut(s)	453
EciI	GGCGGA	1 cut(s)	330
Eco130I	CCWWGG	1 cut(s)	65
Eco31I	GGTCTC	1 cut(s)	520
Eco47III	AGCGCT	1 cut(s)	369
Eco57I	CTGAAG	1 cut(s)	477
EcoRI	GAATTC	1 cut(s)	243
EcoT14I	CCWWGG	1 cut(s)	65
ErhI	CCWWGG	1 cut(s)	65
FaeI	CATG	1 cut(s)	502
FatI	CATG	1 cut(s)	498
FauI	CCCGC	1 cut(s)	526
FauNDI	CATATG	1 cut(s)	54
Fnu4HI	GCNGC	2 cut(s)	18, 474
Fsp4HI	GCNGC	2 cut(s)	18, 474
GlaI	GCGC	2 cut(s)	168, 369
GluI	GCNGC	2 cut(s)	18, 474
HaeII	RGCGCY	2 cut(s)	170, 371
HapII	CCGG	1 cut(s)	418
HhaI	GCGC	2 cut(s)	169, 370
Hin1II	CATG	1 cut(s)	502
Hin6I	GCGC	2 cut(s)	167, 368
HinP1I	GCGC	2 cut(s)	167, 368
HinfI	GANTC	4 cut(s)	218, 238, 253, 259
HpaII	CCGG	1 cut(s)	418
Hpy188I	TCNGA	6 cut(s)	132, 252, 258, 457, 490, 549
Hpy188III	TCNNGA	3 cut(s)	215, 263, 283
HpyAV	CCTTC	2 cut(s)	395, 600
HpyCH4V	TGCA	1 cut(s)	340
HpyF10VI	GCNNNNNNNGC	4 cut(s)	146, 367, 482, 569
HpyF3I	CTNAG	2 cut(s)	264, 489
Hsp92II	CATG	1 cut(s)	502
HspAI	GCGC	2 cut(s)	167, 368
Kzo9I	GATC	4 cut(s)	201, 211, 229, 452
LguI	GCTCTTC	1 cut(s)	453
LmnI	GCTCC	2 cut(s)	137, 164
Lsp1109I	GCAGC	2 cut(s)	4, 485
LweI	GCATC	2 cut(s)	64, 494
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	4 cut(s)	203, 213, 231, 454
MboI	GATC	4 cut(s)	201, 211, 229, 452
MboII	GAAGA	4 cut(s)	419, 470, 524, 585
MflI	RGATCY	1 cut(s)	452
MluCI	AATT	2 cut(s)	243, 604
MlyI	GAGTC	1 cut(s)	253
MmeI	TCCRAC	2 cut(s)	207, 281
MnlI	CCTC	9 cut(s)	178, 181, 184, 202, 258, 319, 430, 586, 589
MroXI	GAANNNNTTC	1 cut(s)	27
MseI	TTAA	2 cut(s)	384, 607
MspA1I	CMGCKG	2 cut(s)	17, 533
MspI	CCGG	1 cut(s)	418
MwoI	GCNNNNNNNGC	4 cut(s)	146, 367, 482, 569
NdeI	CATATG	1 cut(s)	54
NdeII	GATC	4 cut(s)	201, 211, 229, 452
NlaIII	CATG	1 cut(s)	502
NlaIV	GGNNCC	1 cut(s)	195
PciSI	GCTCTTC	1 cut(s)	453
PcsI	WCGNNNNNNNCGW	1 cut(s)	238
PdmI	GAANNNNTTC	1 cut(s)	27
PfeI	GAWTC	3 cut(s)	218, 238, 253
PkrI	GCNGC	2 cut(s)	19, 475
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
PshBI	ATTAAT	1 cut(s)	384
PspN4I	GGNNCC	1 cut(s)	195
PstNI	CAGNNNCTG	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	452
PvuII	CAGCTG	1 cut(s)	17
RsaI	GTAC	3 cut(s)	61, 269, 374
RsaNI	GTAC	3 cut(s)	60, 268, 373
SapI	GCTCTTC	1 cut(s)	453
SaqAI	TTAA	2 cut(s)	384, 607
SatI	GCNGC	2 cut(s)	18, 474
Sau3AI	GATC	4 cut(s)	201, 211, 229, 452
SchI	GAGTC	1 cut(s)	253
SetI	ASST	8 cut(s)	19, 147, 195, 290, 330, 465, 478, 578
SfaNI	GCATC	2 cut(s)	64, 494
SgrAI	CRCCGGYG	1 cut(s)	417
Sse9I	AATT	2 cut(s)	243, 604
SsiI	CCGC	5 cut(s)	315, 335, 421, 533, 570
SspI	AATATT	2 cut(s)	382, 553
StyI	CCWWGG	1 cut(s)	65
TaqI	TCGA	2 cut(s)	241, 350
TasI	AATT	2 cut(s)	243, 604
TatI	WGTACW	1 cut(s)	372
TfiI	GAWTC	3 cut(s)	218, 238, 253
Tru1I	TTAA	2 cut(s)	384, 607
Tru9I	TTAA	2 cut(s)	384, 607
TseI	GCWGC	2 cut(s)	17, 473
TspDTI	ATGAA	1 cut(s)	414
TspGWI	ACGGA	1 cut(s)	338
VspI	ATTAAT	1 cut(s)	384
XapI	RAATTY	1 cut(s)	243
XmnI	GAANNNNTTC	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.