Rmu_sc0014034.1_g000002

poly ADP-ribose polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014034.1
OG0018229
Physical Location & Seq
Forward (+)
3034 .. 4004
971 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014034.1_g000002.1.cds

Sequence Viewer

Length: 594 bp
atgcatccccattcccagatccgaattgacaccgatgattatcaccaggaggatgaggttcctatgatcgtcgaggatcaagattcctggtcggatcgccccgaatccaattcctctgataccggttccgatttcgattccgactcctgtgagcagattgatgaagattcggagtgtgattgggagagcgaaactgctgaatcgaattctattgatgattttggggtttttaccggaaatgggatgatgttcagagtgaatgatgtgagtgaggagtacgatagtattgtcaagagttttgttgtgggtatgggatcgacgggcggagctacgaaggttgtggaggtgcacaagaaatcgatttctggactgatcgggctggccagcttgaaaaatgaaggagaagaacgacaccggcggcagcggcggtggtgggtatgtgagggcggaccagatagatctgaagagcttggacgagtagcttcagaagcatctgagcagggcatggactatggagaagaacaagaacagagaccagcaggaacaacaaatccgaatattaggtatgcttggtacatcgggatcaaggaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PARP RST

Protein Analysis

197

Amino Acids

22.18

Weight (kDa)

4.32

Isoelectric Point (pI)

62.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 324, 418, 424, 427, 447
AclWI GGATC 5 cut(s) 13, 84, 102, 322, 590
AcoI YGGCCR 1 cut(s) 381
AcsI RAATTY 1 cut(s) 205
AcuI CTGAAG 2 cut(s) 468, 483
AfaI GTAC 2 cut(s) 278, 575
AfiI CCNNNNNNNGG 1 cut(s) 240
AgeI ACCGGT 1 cut(s) 122
AgsI TTSAA 1 cut(s) 391
AjnI CCWGG 2 cut(s) 45, 86
AloI GAACNNNNNNTCC 2 cut(s) 535, 567
AluBI AGCT 4 cut(s) 329, 387, 469, 482
AluI AGCT 4 cut(s) 329, 387, 469, 482
Alw21I GWGCWC 1 cut(s) 351
Alw26I GTCTC 1 cut(s) 526
Alw44I GTGCAC 1 cut(s) 347
AlwI GGATC 5 cut(s) 13, 84, 102, 322, 590
AoxI GGCC 1 cut(s) 381
ApaLI GTGCAC 1 cut(s) 347
ApeKI GCWGC 1 cut(s) 421
ApoI RAATTY 1 cut(s) 205
AsiGI ACCGGT 1 cut(s) 122
AspS9I GGNCC 1 cut(s) 449
AsuHPI GGTGA 1 cut(s) 35
AvaII GGWCC 1 cut(s) 449
BaeGI GKGCMC 1 cut(s) 351
BalI TGGCCA 1 cut(s) 383
Bbv12I GWGCWC 1 cut(s) 351
BbvI GCAGC 1 cut(s) 433
BciT130I CCWGG 2 cut(s) 47, 88
BcoDI GTCTC 1 cut(s) 526
BglII AGATCT 1 cut(s) 458
BisI GCNGC 3 cut(s) 419, 422, 425
BlsI GCNGC 3 cut(s) 420, 423, 426
Bme1390I CCNGG 2 cut(s) 47, 88
Bme18I GGWCC 1 cut(s) 449
BmgT120I GGNCC 1 cut(s) 449
BmiI GGNNCC 2 cut(s) 60, 127
BmrFI CCNGG 2 cut(s) 47, 88
BmsI GCATC 2 cut(s) 13, 500
Bsa29I ATCGAT 1 cut(s) 359
BsaBI GATNNNNATC 1 cut(s) 39
BsaI GGTCTC 1 cut(s) 526
BsaWI WCCGGW 2 cut(s) 122, 233
Bsc4I CCNNNNNNNGG 1 cut(s) 240
Bse118I RCCGGY 2 cut(s) 122, 414
Bse8I GATNNNNATC 1 cut(s) 39
BseBI CCWGG 2 cut(s) 47, 88
BseCI ATCGAT 1 cut(s) 359
BseGI GGATG 3 cut(s) 4, 58, 249
BseJI GATNNNNATC 1 cut(s) 39
BseLI CCNNNNNNNGG 1 cut(s) 240
BseMII CTCAG 1 cut(s) 486
BseRI GAGGAG 1 cut(s) 287
BseSI GKGCMC 1 cut(s) 351
BseXI GCAGC 1 cut(s) 433
BshFI GGCC 1 cut(s) 383
BshTI ACCGGT 1 cut(s) 122
BshVI ATCGAT 1 cut(s) 359
BsiHKAI GWGCWC 1 cut(s) 351
BsiSI CCGG 3 cut(s) 123, 234, 415
BslI CCNNNNNNNGG 1 cut(s) 240
BsmAI GTCTC 1 cut(s) 526
BsnI GGCC 1 cut(s) 383
Bso31I GGTCTC 1 cut(s) 526
Bsp1286I GDGCHC 1 cut(s) 351
Bsp143I GATC 8 cut(s) 18, 66, 76, 94, 314, 372, 458, 582
BspACI CCGC 5 cut(s) 324, 418, 424, 427, 447
BspANI GGCC 1 cut(s) 383
BspCNI CTCAG 1 cut(s) 487
BspDI ATCGAT 1 cut(s) 359
BspLI GGNNCC 2 cut(s) 60, 127
BspPI GGATC 5 cut(s) 13, 84, 102, 322, 590
BspQI GCTCTTC 1 cut(s) 459
BspTNI GGTCTC 1 cut(s) 526
BsrFI RCCGGY 2 cut(s) 122, 414
BssAI RCCGGY 2 cut(s) 122, 414
BssMI GATC 8 cut(s) 18, 66, 76, 94, 314, 372, 458, 582
Bst2UI CCWGG 2 cut(s) 47, 88
Bst6I CTCTTC 1 cut(s) 459
BstC8I GCNNGC 2 cut(s) 381, 385
BstDEI CTNAG 1 cut(s) 495
BstF5I GGATG 3 cut(s) 4, 58, 249
BstKTI GATC 8 cut(s) 21, 69, 79, 97, 317, 375, 461, 585
BstMAI GTCTC 1 cut(s) 526
BstMBI GATC 8 cut(s) 18, 66, 76, 94, 314, 372, 458, 582
BstMWI GCNNNNNNNGC 2 cut(s) 424, 488
BstNI CCWGG 2 cut(s) 47, 88
BstSCI CCNGG 2 cut(s) 45, 86
BstSLI GKGCMC 1 cut(s) 351
BstV1I GCAGC 1 cut(s) 433
BstX2I RGATCY 2 cut(s) 18, 458
BstYI RGATCY 2 cut(s) 18, 458
Bsu15I ATCGAT 1 cut(s) 359
BsuRI GGCC 1 cut(s) 383
BsuTUI ATCGAT 1 cut(s) 359
BtsCI GGATG 3 cut(s) 4, 58, 249
Cac8I GCNNGC 2 cut(s) 381, 385
Cfr10I RCCGGY 2 cut(s) 122, 414
Cfr13I GGNCC 1 cut(s) 449
ClaI ATCGAT 1 cut(s) 359
Csp6I GTAC 2 cut(s) 277, 574
CspAI ACCGGT 1 cut(s) 122
CviAII CATG 1 cut(s) 505
CviJI RGCY 6 cut(s) 329, 379, 383, 387, 469, 482
CviKI_1 RGCY 6 cut(s) 329, 379, 383, 387, 469, 482
CviQI GTAC 2 cut(s) 277, 574
DdeI CTNAG 1 cut(s) 495
DpnI GATC 8 cut(s) 20, 68, 78, 96, 316, 374, 460, 584
DpnII GATC 8 cut(s) 18, 66, 76, 94, 314, 372, 458, 582
EaeI YGGCCR 1 cut(s) 381
Eam1104I CTCTTC 1 cut(s) 459
EarI CTCTTC 1 cut(s) 459
EciI GGCGGA 2 cut(s) 339, 462
Eco31I GGTCTC 1 cut(s) 526
Eco47I GGWCC 1 cut(s) 449
Eco57I CTGAAG 2 cut(s) 468, 483
EcoRI GAATTC 1 cut(s) 205
EcoRII CCWGG 2 cut(s) 45, 86
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 508
FaiI YATR 6 cut(s) 65, 311, 439, 506, 513, 567
FatI CATG 1 cut(s) 504
Fnu4HI GCNGC 3 cut(s) 419, 422, 425
FokI GGATG 2 cut(s) 65, 256
Fsp4HI GCNGC 3 cut(s) 419, 422, 425
GluI GCNGC 3 cut(s) 419, 422, 425
HaeIII GGCC 1 cut(s) 383
HapII CCGG 3 cut(s) 123, 234, 415
Hin1II CATG 1 cut(s) 508
HinfI GANTC 6 cut(s) 83, 104, 137, 143, 167, 200
HpaII CCGG 3 cut(s) 123, 234, 415
HphI GGTGA 1 cut(s) 35
Hpy166II GTNNAC 1 cut(s) 349
Hpy188III TCNNGA 4 cut(s) 80, 292, 366, 580
Hpy8I GTNNAC 1 cut(s) 349
Hpy99I CGWCG 2 cut(s) 74, 322
HpyAV CCTTC 2 cut(s) 328, 392
HpyCH4V TGCA 2 cut(s) 4, 349
HpyF10VI GCNNNNNNNGC 2 cut(s) 424, 488
HpyF3I CTNAG 1 cut(s) 495
Hsp92II CATG 1 cut(s) 508
Kzo9I GATC 8 cut(s) 18, 66, 76, 94, 314, 372, 458, 582
LguI GCTCTTC 1 cut(s) 459
LmnI GCTCC 1 cut(s) 326
Lsp1109I GCAGC 1 cut(s) 433
LweI GCATC 2 cut(s) 13, 500
MalI GATC 8 cut(s) 20, 68, 78, 96, 316, 374, 460, 584
MboI GATC 8 cut(s) 18, 66, 76, 94, 314, 372, 458, 582
MboII GAAGA 4 cut(s) 176, 416, 476, 530
MflI RGATCY 2 cut(s) 18, 458
MhlI GDGCHC 1 cut(s) 351
MlsI TGGCCA 1 cut(s) 383
MluCI AATT 3 cut(s) 24, 109, 205
MluNI TGGCCA 1 cut(s) 383
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 2 cut(s) 72, 165
MnlI CCTC 7 cut(s) 43, 49, 67, 124, 265, 337, 436
Mox20I TGGCCA 1 cut(s) 383
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 383
Msp20I TGGCCA 1 cut(s) 383
MspA1I CMGCKG 1 cut(s) 424
MspI CCGG 3 cut(s) 123, 234, 415
MspR9I CCNGG 2 cut(s) 47, 88
MvaI CCWGG 2 cut(s) 47, 88
MwoI GCNNNNNNNGC 2 cut(s) 424, 488
NdeII GATC 8 cut(s) 18, 66, 76, 94, 314, 372, 458, 582
NlaIII CATG 1 cut(s) 508
NlaIV GGNNCC 2 cut(s) 60, 127
NsiI ATGCAT 1 cut(s) 6
PciSI GCTCTTC 1 cut(s) 459
PfeI GAWTC 5 cut(s) 83, 104, 137, 167, 200
PinAI ACCGGT 1 cut(s) 122
PkrI GCNGC 3 cut(s) 420, 423, 426
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
Psp6I CCWGG 2 cut(s) 45, 86
PspGI CCWGG 2 cut(s) 45, 86
PspN4I GGNNCC 2 cut(s) 60, 127
PspPI GGNCC 1 cut(s) 449
PsuI RGATCY 2 cut(s) 18, 458
RsaI GTAC 2 cut(s) 278, 575
RsaNI GTAC 2 cut(s) 277, 574
SapI GCTCTTC 1 cut(s) 459
SatI GCNGC 3 cut(s) 419, 422, 425
Sau3AI GATC 8 cut(s) 18, 66, 76, 94, 314, 372, 458, 582
Sau96I GGNCC 1 cut(s) 449
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 2 cut(s) 47, 88
SduI GDGCHC 1 cut(s) 351
SetI ASST 8 cut(s) 60, 331, 339, 348, 389, 471, 484, 566
SfaNI GCATC 2 cut(s) 13, 500
SgrAI CRCCGGYG 1 cut(s) 414
SinI GGWCC 1 cut(s) 449
Sse9I AATT 3 cut(s) 24, 109, 205
SsiI CCGC 5 cut(s) 324, 418, 424, 427, 447
SspI AATATT 1 cut(s) 559
StyD4I CCNGG 2 cut(s) 45, 86
TaqI TCGA 5 cut(s) 72, 135, 203, 317, 359
TasI AATT 3 cut(s) 24, 109, 205
TauI GCSGC 2 cut(s) 421, 427
TfiI GAWTC 5 cut(s) 83, 104, 137, 167, 200
TseI GCWGC 1 cut(s) 421
TspDTI ATGAA 2 cut(s) 177, 411
VneI GTGCAC 1 cut(s) 347
VpaK11BI GGWCC 1 cut(s) 449
XapI RAATTY 1 cut(s) 205
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.