Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0018229

Physical Location & Seq

Genomic Coordinates Reverse (-)

81391988 .. 81392955

Gene Structure 968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG526300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGATGTTCAGAGTGAATGATGTGAGTGAGGAGTACGAGACTATTGTCAAGAGCTTTGCTGTGGGTATGGGACCGGCGGGAGGAGTTACGGAGGTTGTGGCGGTGCACAAGAAATCGATTTCTGGGCTGACCGGCCGGGCCAGGTTCGAAACGTTTCGGGTTTTTTCGGAGGCGGTGGGGAAGAAATGCGACGGAAACGCGAACATTAAGTATGCTTGGTACAGCGGATCGAGGGATGAGATTGTGGAGATAATGGATCATGGATTTAATAGTCGTAATGCGGATGAGTGTGGCCGGATTCAGTTGATTCCGGTTAAGTTTGCTTTGGATGGGGCGTTGGGCTTGGAGGTTGGTGATGATGGGCTCAGGCATATGCTGCTGTGCCGGGTTATATTGGGGAAGATGGAAGTGGTGCCTAGCGGTTCTCAACAAGGTGTTCCTGGCTCGAATGAGTTTGATTCTGCTGGAGAATGGATCAGTACGAGATATCTATCTCCCTGGTCTGATAACCGTGCTTGCAGGGTTGCTGCCTGCTCCGAAGACGGCCATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PARP RST

Protein Analysis

184

Amino Acids

20.0

Weight (kDa)

5.41

Isoelectric Point (pI)

43.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018229)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000011102 RLG00000030025
rosa_multiflora	Rmu_sc0001839.1_g000014 Rmu_sc0004514.1_g000021 Rmu_sc0008320.1_g000002 Rmu_sc0014034.1_g000002
rosa_samantha	Rh2DG358600 Rh5BG080300 Rh5DG526300
rosa_wichuraiana	Rw0G009170 Rw7G028350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	412
AccII	CGCG	1 cut(s)	200
AciI	CCGC	6 cut(s)	77, 101, 173, 225, 281, 420
AclI	AACGTT	1 cut(s)	152
AclWI	GGATC	3 cut(s)	235, 264, 482
AcoI	YGGCCR	3 cut(s)	133, 292, 544
AfaI	GTAC	3 cut(s)	35, 221, 481
AfiI	CCNNNNNNNGG	1 cut(s)	80
AjnI	CCWGG	3 cut(s)	140, 439, 497
AluBI	AGCT	1 cut(s)	54
AluI	AGCT	1 cut(s)	54
Alw21I	GWGCWC	1 cut(s)	108
Alw26I	GTCTC	1 cut(s)	32
Alw44I	GTGCAC	1 cut(s)	104
AlwI	GGATC	3 cut(s)	235, 264, 482
AoxI	GGCC	4 cut(s)	133, 138, 292, 544
ApaLI	GTGCAC	1 cut(s)	104
ApeKI	GCWGC	2 cut(s)	376, 527
Asp700I	GAANNNNTTC	1 cut(s)	153
AspS9I	GGNCC	2 cut(s)	71, 138
AsuC2I	CCSGG	2 cut(s)	137, 386
AsuHPI	GGTGA	1 cut(s)	365
AsuII	TTCGAA	1 cut(s)	147
AvaII	GGWCC	1 cut(s)	71
BaeGI	GKGCMC	1 cut(s)	108
BanI	GGYRCC	1 cut(s)	412
BanII	GRGCYC	1 cut(s)	366
BbsI	GAAGAC	1 cut(s)	546
Bbv12I	GWGCWC	1 cut(s)	108
BbvI	GCAGC	2 cut(s)	363, 514
BccI	CCATC	3 cut(s)	323, 353, 397
BciT130I	CCWGG	3 cut(s)	142, 441, 499
BcnI	CCSGG	2 cut(s)	137, 386
BcoDI	GTCTC	1 cut(s)	32
BfaI	CTAG	1 cut(s)	417
BisI	GCNGC	2 cut(s)	377, 528
BlsI	GCNGC	2 cut(s)	378, 529
Bme1390I	CCNGG	5 cut(s)	137, 142, 386, 441, 499
Bme18I	GGWCC	1 cut(s)	71
BmgT120I	GGNCC	2 cut(s)	71, 138
BmiI	GGNNCC	2 cut(s)	72, 414
BmrFI	CCNGG	5 cut(s)	137, 142, 386, 441, 499
BoxI	GACNNNNGTC	1 cut(s)	44
BpiI	GAAGAC	1 cut(s)	546
BpmI	CTGGAG	1 cut(s)	486
Bpu10I	CCTNAGC	1 cut(s)	365
Bpu14I	TTCGAA	1 cut(s)	147
BpuMI	CCSGG	2 cut(s)	137, 386
Bsa29I	ATCGAT	1 cut(s)	116
BsaBI	GATNNNNATC	1 cut(s)	490
BsaJI	CCNNGG	1 cut(s)	497
BsaWI	WCCGGW	1 cut(s)	310
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
Bse118I	RCCGGY	2 cut(s)	73, 131
Bse8I	GATNNNNATC	1 cut(s)	490
BseBI	CCWGG	3 cut(s)	142, 441, 499
BseCI	ATCGAT	1 cut(s)	116
BseDI	CCNNGG	1 cut(s)	497
BseGI	GGATG	3 cut(s)	241, 289, 334
BseJI	GATNNNNATC	1 cut(s)	490
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseMII	CTCAG	1 cut(s)	379
BseRI	GAGGAG	2 cut(s)	44, 96
BseSI	GKGCMC	1 cut(s)	108
BseX3I	CGGCCG	1 cut(s)	133
BseXI	GCAGC	2 cut(s)	363, 514
Bsh1236I	CGCG	1 cut(s)	200
Bsh1285I	CGRYCG	1 cut(s)	136
BshFI	GGCC	4 cut(s)	135, 140, 294, 546
BshNI	GGYRCC	1 cut(s)	412
BshVI	ATCGAT	1 cut(s)	116
BsiEI	CGRYCG	1 cut(s)	136
BsiHKAI	GWGCWC	1 cut(s)	108
BsiSI	CCGG	6 cut(s)	74, 132, 136, 295, 311, 385
BslFI	GGGAC	1 cut(s)	84
BslI	CCNNNNNNNGG	1 cut(s)	80
BsmAI	GTCTC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	84
BsnI	GGCC	4 cut(s)	135, 140, 294, 546
Bsp119I	TTCGAA	1 cut(s)	147
Bsp1286I	GDGCHC	2 cut(s)	108, 366
Bsp143I	GATC	3 cut(s)	227, 256, 474
BspACI	CCGC	6 cut(s)	77, 101, 173, 225, 281, 420
BspANI	GGCC	4 cut(s)	135, 140, 294, 546
BspCNI	CTCAG	1 cut(s)	378
BspDI	ATCGAT	1 cut(s)	116
BspFNI	CGCG	1 cut(s)	200
BspLI	GGNNCC	2 cut(s)	72, 414
BspPI	GGATC	3 cut(s)	235, 264, 482
BspT104I	TTCGAA	1 cut(s)	147
BspT107I	GGYRCC	1 cut(s)	412
BsrFI	RCCGGY	2 cut(s)	73, 131
BssAI	RCCGGY	2 cut(s)	73, 131
BssECI	CCNNGG	1 cut(s)	497
BssMI	GATC	3 cut(s)	227, 256, 474
Bst2UI	CCWGG	3 cut(s)	142, 441, 499
Bst4CI	ACNGT	1 cut(s)	512
BstAPI	GCANNNNNTGC	1 cut(s)	376
BstBI	TTCGAA	1 cut(s)	147
BstC8I	GCNNGC	2 cut(s)	517, 532
BstDEI	CTNAG	2 cut(s)	365, 552
BstF5I	GGATG	3 cut(s)	241, 289, 334
BstFNI	CGCG	1 cut(s)	200
BstKTI	GATC	3 cut(s)	230, 259, 477
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	3 cut(s)	227, 256, 474
BstMCI	CGRYCG	1 cut(s)	136
BstMWI	GCNNNNNNNGC	1 cut(s)	376
BstNI	CCWGG	3 cut(s)	142, 441, 499
BstPAI	GACNNNNGTC	1 cut(s)	44
BstSCI	CCNGG	5 cut(s)	135, 140, 384, 439, 497
BstSLI	GKGCMC	1 cut(s)	108
BstUI	CGCG	1 cut(s)	200
BstV1I	GCAGC	2 cut(s)	363, 514
BstV2I	GAAGAC	1 cut(s)	546
BstZI	CGGCCG	1 cut(s)	133
Bsu15I	ATCGAT	1 cut(s)	116
BsuRI	GGCC	4 cut(s)	135, 140, 294, 546
BsuTUI	ATCGAT	1 cut(s)	116
BtsCI	GGATG	3 cut(s)	241, 289, 334
Cac8I	GCNNGC	2 cut(s)	517, 532
Cfr10I	RCCGGY	2 cut(s)	73, 131
Cfr13I	GGNCC	2 cut(s)	71, 138
ClaI	ATCGAT	1 cut(s)	116
Csp6I	GTAC	3 cut(s)	34, 220, 480
CviAII	CATG	2 cut(s)	260, 548
CviJI	RGCY	9 cut(s)	54, 127, 135, 140, 294, 342, 364, 444, 546
CviKI_1	RGCY	9 cut(s)	54, 127, 135, 140, 294, 342, 364, 444, 546
CviQI	GTAC	3 cut(s)	34, 220, 480
DdeI	CTNAG	2 cut(s)	365, 552
DpnI	GATC	3 cut(s)	229, 258, 476
DpnII	GATC	3 cut(s)	227, 256, 474
EaeI	YGGCCR	3 cut(s)	133, 292, 544
EagI	CGGCCG	1 cut(s)	133
EclXI	CGGCCG	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	366
Eco32I	GATATC	1 cut(s)	488
Eco47I	GGWCC	1 cut(s)	71
Eco52I	CGGCCG	1 cut(s)	133
EcoRII	CCWGG	3 cut(s)	140, 439, 497
EcoRV	GATATC	1 cut(s)	488
EcoT38I	GRGCYC	1 cut(s)	366
FaeI	CATG	2 cut(s)	263, 551
FaiI	YATR	7 cut(s)	68, 213, 261, 372, 374, 392, 549
FaqI	GGGAC	1 cut(s)	84
FatI	CATG	2 cut(s)	259, 547
FauI	CCCGC	1 cut(s)	70
FauNDI	CATATG	1 cut(s)	372
Fnu4HI	GCNGC	2 cut(s)	377, 528
FokI	GGATG	3 cut(s)	248, 296, 341
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	2 cut(s)	377, 528
FspBI	CTAG	1 cut(s)	417
GluI	GCNGC	2 cut(s)	377, 528
GsuI	CTGGAG	1 cut(s)	486
HaeIII	GGCC	4 cut(s)	135, 140, 294, 546
HapII	CCGG	6 cut(s)	74, 132, 136, 295, 311, 385
Hin1II	CATG	2 cut(s)	263, 551
HinfI	GANTC	3 cut(s)	298, 307, 458
HpaII	CCGG	6 cut(s)	74, 132, 136, 295, 311, 385
HphI	GGTGA	1 cut(s)	365
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	4 cut(s)	11, 169, 505, 538
Hpy188III	TCNNGA	1 cut(s)	49
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	1 cut(s)	194
HpyCH4III	ACNGT	1 cut(s)	512
HpyCH4IV	ACGT	1 cut(s)	152
HpyCH4V	TGCA	2 cut(s)	106, 519
HpyF10VI	GCNNNNNNNGC	1 cut(s)	376
HpyF3I	CTNAG	2 cut(s)	365, 552
HpySE526I	ACGT	1 cut(s)	152
Hsp92II	CATG	2 cut(s)	263, 551
Kzo9I	GATC	3 cut(s)	227, 256, 474
LmnI	GCTCC	1 cut(s)	539
Lsp1109I	GCAGC	2 cut(s)	363, 514
MaeI	CTAG	1 cut(s)	417
MaeII	ACGT	1 cut(s)	152
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	3 cut(s)	229, 258, 476
MboI	GATC	3 cut(s)	227, 256, 474
MboII	GAAGA	3 cut(s)	193, 412, 551
MhlI	GDGCHC	2 cut(s)	108, 366
MnlI	CCTC	6 cut(s)	22, 74, 85, 163, 225, 340
MroXI	GAANNNNTTC	1 cut(s)	153
MseI	TTAA	3 cut(s)	207, 267, 315
MspA1I	CMGCKG	1 cut(s)	225
MspI	CCGG	6 cut(s)	74, 132, 136, 295, 311, 385
MspR9I	CCNGG	5 cut(s)	137, 142, 386, 441, 499
MvaI	CCWGG	3 cut(s)	142, 441, 499
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	1 cut(s)	376
NciI	CCSGG	2 cut(s)	137, 386
NdeI	CATATG	1 cut(s)	372
NdeII	GATC	3 cut(s)	227, 256, 474
NlaIII	CATG	2 cut(s)	263, 551
NlaIV	GGNNCC	2 cut(s)	72, 414
NspV	TTCGAA	1 cut(s)	147
PdmI	GAANNNNTTC	1 cut(s)	153
PfeI	GAWTC	3 cut(s)	298, 307, 458
PkrI	GCNGC	2 cut(s)	378, 529
PshAI	GACNNNNGTC	1 cut(s)	44
Psp1406I	AACGTT	1 cut(s)	152
Psp6I	CCWGG	3 cut(s)	140, 439, 497
PspGI	CCWGG	3 cut(s)	140, 439, 497
PspN4I	GGNNCC	2 cut(s)	72, 414
PspPI	GGNCC	2 cut(s)	71, 138
RsaI	GTAC	3 cut(s)	35, 221, 481
RsaNI	GTAC	3 cut(s)	34, 220, 480
SaqAI	TTAA	3 cut(s)	207, 267, 315
SatI	GCNGC	2 cut(s)	377, 528
Sau3AI	GATC	3 cut(s)	227, 256, 474
Sau96I	GGNCC	2 cut(s)	71, 138
ScrFI	CCNGG	5 cut(s)	137, 142, 386, 441, 499
SduI	GDGCHC	2 cut(s)	108, 366
SetI	ASST	6 cut(s)	56, 96, 146, 155, 351, 436
SfuI	TTCGAA	1 cut(s)	147
SinI	GGWCC	1 cut(s)	71
SsiI	CCGC	6 cut(s)	77, 101, 173, 225, 281, 420
SspMI	CTAG	1 cut(s)	417
StyD4I	CCNGG	5 cut(s)	135, 140, 384, 439, 497
TaaI	ACNGT	1 cut(s)	512
TaiI	ACGT	1 cut(s)	155
TaqI	TCGA	4 cut(s)	116, 147, 230, 446
TfiI	GAWTC	3 cut(s)	298, 307, 458
Tru1I	TTAA	3 cut(s)	207, 267, 315
Tru9I	TTAA	3 cut(s)	207, 267, 315
TseI	GCWGC	2 cut(s)	376, 527
TspGWI	ACGGA	2 cut(s)	104, 207
VneI	GTGCAC	1 cut(s)	104
VpaK11BI	GGWCC	1 cut(s)	71
XmnI	GAANNNNTTC	1 cut(s)	153
XspI	CTAG	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.