Rw0G009170

Poly (ADP-ribose) polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00356
OG0018229
Physical Location & Seq
Reverse (-)
26141 .. 26605
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G009170.1

Sequence Viewer

Length: 465 bp
ATGCATCCCCATTCCCAGATCCGGATTGACACCGATGATTATCACCAGGAGGAGGAGGTTCCTATGATCGTCGAGGATCAAGATTCCTGGTCGGATCGCCCCGAATCCAATTCCTCCGATACGGGTTCCGATTCCGATTCCGACTCTTGTAAGCAGATTGATGAAGATTCGGAGTGTGATTGGGAGAGCGAAACTGCTGAATCGAATTCTATTGATGATTTTGGGGTTTTTACCGGAAATGGGATGATGTTCAGAGTGAATGATGTGAGTGAGGAGTACGATAGTATTGTCAAGAGCTTTGCTGTGGGTATGAGATCGACGGGCGGAGCTACGAAGGTTGTGGAGGTGCACAAGAAATCGATTTCTGGACTGATCGGGCTGGCCAGGTTCGAAACATTTTGGGTTTTTTTGCAGGCCGTGGGGAAAAAATGCGGTGAGAGAGTGAGGACTCGGAGGAAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PARP RST

Protein Analysis

154

Amino Acids

17.36

Weight (kDa)

4.53

Isoelectric Point (pI)

55.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 21
AciI CCGC 2 cut(s) 324, 432
AclWI GGATC 3 cut(s) 13, 84, 102
AcoI YGGCCR 1 cut(s) 381
AcsI RAATTY 1 cut(s) 205
AfaI GTAC 1 cut(s) 278
AfiI CCNNNNNNNGG 3 cut(s) 21, 52, 240
AjnI CCWGG 3 cut(s) 45, 86, 383
AluBI AGCT 2 cut(s) 297, 329
AluI AGCT 2 cut(s) 297, 329
Alw21I GWGCWC 1 cut(s) 351
Alw44I GTGCAC 1 cut(s) 347
AlwI GGATC 3 cut(s) 13, 84, 102
Aor13HI TCCGGA 1 cut(s) 21
AoxI GGCC 2 cut(s) 381, 414
ApaLI GTGCAC 1 cut(s) 347
ApoI RAATTY 1 cut(s) 205
AsuHPI GGTGA 2 cut(s) 35, 446
AsuII TTCGAA 1 cut(s) 390
BaeGI GKGCMC 1 cut(s) 351
BalI TGGCCA 1 cut(s) 383
Bbv12I GWGCWC 1 cut(s) 351
BceAI ACGGC 1 cut(s) 401
BciT130I CCWGG 3 cut(s) 47, 88, 385
Bme1390I CCNGG 3 cut(s) 47, 88, 385
BmiI GGNNCC 2 cut(s) 60, 127
BmrFI CCNGG 3 cut(s) 47, 88, 385
BmsI GCATC 1 cut(s) 13
Bpu14I TTCGAA 1 cut(s) 390
Bsa29I ATCGAT 1 cut(s) 359
BsaBI GATNNNNATC 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 417
BsaWI WCCGGW 2 cut(s) 21, 233
Bsc4I CCNNNNNNNGG 3 cut(s) 21, 52, 240
Bse8I GATNNNNATC 1 cut(s) 39
BseAI TCCGGA 1 cut(s) 21
BseBI CCWGG 3 cut(s) 47, 88, 385
BseCI ATCGAT 1 cut(s) 359
BseDI CCNNGG 1 cut(s) 417
BseGI GGATG 2 cut(s) 4, 249
BseJI GATNNNNATC 1 cut(s) 39
BseLI CCNNNNNNNGG 3 cut(s) 21, 52, 240
BseRI GAGGAG 3 cut(s) 65, 68, 287
BseSI GKGCMC 1 cut(s) 351
BshFI GGCC 2 cut(s) 383, 416
BshVI ATCGAT 1 cut(s) 359
BsiHKAI GWGCWC 1 cut(s) 351
BsiSI CCGG 2 cut(s) 22, 234
BslI CCNNNNNNNGG 3 cut(s) 21, 52, 240
BsnI GGCC 2 cut(s) 383, 416
Bsp119I TTCGAA 1 cut(s) 390
Bsp1286I GDGCHC 1 cut(s) 351
Bsp13I TCCGGA 1 cut(s) 21
Bsp143I GATC 6 cut(s) 18, 66, 76, 94, 314, 372
BspACI CCGC 2 cut(s) 324, 432
BspANI GGCC 2 cut(s) 383, 416
BspDI ATCGAT 1 cut(s) 359
BspEI TCCGGA 1 cut(s) 21
BspLI GGNNCC 2 cut(s) 60, 127
BspPI GGATC 3 cut(s) 13, 84, 102
BspT104I TTCGAA 1 cut(s) 390
BssECI CCNNGG 1 cut(s) 417
BssMI GATC 6 cut(s) 18, 66, 76, 94, 314, 372
Bst2UI CCWGG 3 cut(s) 47, 88, 385
BstBI TTCGAA 1 cut(s) 390
BstC8I GCNNGC 2 cut(s) 381, 414
BstDSI CCRYGG 1 cut(s) 417
BstF5I GGATG 2 cut(s) 4, 249
BstKTI GATC 6 cut(s) 21, 69, 79, 97, 317, 375
BstMBI GATC 6 cut(s) 18, 66, 76, 94, 314, 372
BstNI CCWGG 3 cut(s) 47, 88, 385
BstSCI CCNGG 3 cut(s) 45, 86, 383
BstSLI GKGCMC 1 cut(s) 351
BstX2I RGATCY 1 cut(s) 18
BstYI RGATCY 1 cut(s) 18
Bsu15I ATCGAT 1 cut(s) 359
BsuRI GGCC 2 cut(s) 383, 416
BsuTUI ATCGAT 1 cut(s) 359
BtgI CCRYGG 1 cut(s) 417
BtsCI GGATG 2 cut(s) 4, 249
Cac8I GCNNGC 2 cut(s) 381, 414
ClaI ATCGAT 1 cut(s) 359
Csp6I GTAC 1 cut(s) 277
CviJI RGCY 5 cut(s) 297, 329, 379, 383, 416
CviKI_1 RGCY 5 cut(s) 297, 329, 379, 383, 416
CviQI GTAC 1 cut(s) 277
DpnI GATC 6 cut(s) 20, 68, 78, 96, 316, 374
DpnII GATC 6 cut(s) 18, 66, 76, 94, 314, 372
EaeI YGGCCR 1 cut(s) 381
EciI GGCGGA 1 cut(s) 339
EcoRI GAATTC 1 cut(s) 205
EcoRII CCWGG 3 cut(s) 45, 86, 383
EcoT22I ATGCAT 1 cut(s) 6
FaiI YATR 2 cut(s) 65, 311
FokI GGATG 1 cut(s) 256
HaeIII GGCC 2 cut(s) 383, 416
HapII CCGG 2 cut(s) 22, 234
HinfI GANTC 8 cut(s) 83, 104, 131, 137, 143, 167, 200, 448
HpaII CCGG 2 cut(s) 22, 234
HphI GGTGA 2 cut(s) 35, 446
Hpy166II GTNNAC 1 cut(s) 349
Hpy188I TCNGA 8 cut(s) 94, 118, 130, 136, 142, 172, 254, 453
Hpy188III TCNNGA 4 cut(s) 22, 80, 292, 366
Hpy8I GTNNAC 1 cut(s) 349
Hpy99I CGWCG 2 cut(s) 74, 322
HpyAV CCTTC 1 cut(s) 328
HpyCH4V TGCA 3 cut(s) 4, 349, 412
Kpn2I TCCGGA 1 cut(s) 21
Kzo9I GATC 6 cut(s) 18, 66, 76, 94, 314, 372
LmnI GCTCC 1 cut(s) 326
LweI GCATC 1 cut(s) 13
MalI GATC 6 cut(s) 20, 68, 78, 96, 316, 374
MboI GATC 6 cut(s) 18, 66, 76, 94, 314, 372
MboII GAAGA 1 cut(s) 176
MflI RGATCY 1 cut(s) 18
MhlI GDGCHC 1 cut(s) 351
MlsI TGGCCA 1 cut(s) 383
MluCI AATT 2 cut(s) 109, 205
MluNI TGGCCA 1 cut(s) 383
MlyI GAGTC 2 cut(s) 137, 442
MmeI TCCRAC 2 cut(s) 72, 165
MnlI CCTC 9 cut(s) 43, 46, 49, 67, 124, 265, 337, 438, 447
Mox20I TGGCCA 1 cut(s) 383
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 21
MscI TGGCCA 1 cut(s) 383
Msp20I TGGCCA 1 cut(s) 383
MspI CCGG 2 cut(s) 22, 234
MspR9I CCNGG 3 cut(s) 47, 88, 385
MvaI CCWGG 3 cut(s) 47, 88, 385
NdeII GATC 6 cut(s) 18, 66, 76, 94, 314, 372
NlaIV GGNNCC 2 cut(s) 60, 127
NsiI ATGCAT 1 cut(s) 6
NspV TTCGAA 1 cut(s) 390
PfeI GAWTC 6 cut(s) 83, 104, 131, 137, 167, 200
PleI GAGTC 2 cut(s) 137, 442
PpsI GAGTC 2 cut(s) 137, 442
Psp6I CCWGG 3 cut(s) 45, 86, 383
PspGI CCWGG 3 cut(s) 45, 86, 383
PspN4I GGNNCC 2 cut(s) 60, 127
PsuI RGATCY 1 cut(s) 18
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
Sau3AI GATC 6 cut(s) 18, 66, 76, 94, 314, 372
SchI GAGTC 2 cut(s) 137, 442
ScrFI CCNGG 3 cut(s) 47, 88, 385
SduI GDGCHC 1 cut(s) 351
SetI ASST 6 cut(s) 60, 299, 331, 339, 348, 389
SfaNI GCATC 1 cut(s) 13
SfuI TTCGAA 1 cut(s) 390
Sse9I AATT 2 cut(s) 109, 205
SsiI CCGC 2 cut(s) 324, 432
StyD4I CCNGG 3 cut(s) 45, 86, 383
TaqI TCGA 5 cut(s) 72, 203, 317, 359, 390
TasI AATT 2 cut(s) 109, 205
TfiI GAWTC 6 cut(s) 83, 104, 131, 137, 167, 200
TspDTI ATGAA 1 cut(s) 177
VneI GTGCAC 1 cut(s) 347
XapI RAATTY 1 cut(s) 205
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.