RLG00000011503

Ammonium transporter 3 member 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0016764
Physical Location & Seq
Forward (+)
9977235 .. 9979346
2112 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011503

Sequence Viewer

Length: 1434 bp
ATGAACAACACCACCTATGCTCTCCCTCCTGGCCTCATGTATGATGAGGCCAGTCCAGAATGGATGAGCAAAGCCGACAACGCATGGCAGCTGACCGCTGCAACCCTGGTTGGCATGCAAAGTGTTCCTGGCCTCATAATCCTATATGGCGGTGCGGTGAAGAAGAAATGGGCTGTGAACTCAGCTTTCATGGCATTCTATGCTTTTGCTTGTGTTCTTCTGTGTTGGGTTGGTTGGGGATATCACATGTCTTTTGGAAGTCCACTCTTCTCATCAGCTCCATTTTGGGGGAAGGCTGATGTGGCATTGGACCAAAAGTATCTTTTTACGCAGGCGTTTCTTGGGAAGTTCCCAAATGCCACAATGGTGTACTTTCAGTTTGTATTTGCAGCAATCACTTTAATTTTGATTGCTGGAGCTCTTCTGGGAAGGATGAACTTTTACGCTTGGATGTTGTTTGTGCCACTCTGGCTGACATTTTCATACACCGTTGGAGCATATAGTATTTGGAGTCCAAACGGGTGGCTTGCCTTGAGAGGAATAATTGATTATTCTGGTGGTTATGTGATCCATCTCTCTTCTGGAGTTGCTGGTTTCACAGCAGCCTACTGGGTCGGTCCTCGTTCAACCAAGGACAGGGAAAGGTTCCCTCCAAACAACATTCTTCTTATGTTGACGGGAGCAGGGTTGCTCTGGATGGGATGGACAGGGTTCAATGGAGGAGACCCTTATGTAGTCAGTATGGATGCTTCATTGGCTGTCTTGAACACTCATGTCTGCACCGCTACCAGCTTGCTAACTTGGCTAGCTCTTGATGTCATCTTTTTCCGCAAGCCTTCTGTCATCGGAGCAGTTCAAGGCATGATCACTGGCTTAGTTTGCATCACCCCAGCTGCTGGAGTTGTGCAAGGATGGGCAGCCATAATAATGGGGCTTCTCTCCGGCTCAATTCCTTGGTACACCATGATGGTTGTCCACAAGAAATCCAGGCTTCTTCAGAAAGTTGATGACACAATGGCTGTCCTACACACTCATGCTATCGCCGGATCCCTTGGTGGACTCCTCACCGGTTTCTTTGCCCATCCAAAGCTCAATAATTTGTTCTATGGCTACTATGCTCAATATGTTGGTCTATTTTATGGTTTTGACATGCGAAAAGTCCATCTCGGGCTTCGTCAAGTAGGAATTCAACTTATCGGGGTAATCTTCGTTGTTACACTAAATGTTGTGGTGACAAGCCTCGTATGCCTTTTGGTGCAACTCATTGTGCCTCTGAGAATGTCTGAAGAGGATATGGAGATTGGTGATGAAGCAGCTCATGGTGAAGAGGCTTATGCTATCTGGGGTCAAGGTGAAAAGATGGACGTAACATATGATTTAGAGTCATCTACAAAACGTAAACCCAGGTCTGCTGGAAATATTGAGATGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ammonium_transp

Protein Analysis

478

Amino Acids

52.34

Weight (kDa)

7.65

Isoelectric Point (pI)

37.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ammonium_transp PF00909 28 - 445 4.6e-81 Ammonium Transporter Family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016764)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29590
malus_domestica MD08G1145400.v1.1 MD15G1121000.v1.1
prunus_persica Prupe.1G473600_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298571
rosa_laevigata RLG00000011503
rosa_multiflora Rmu_sc0004500.1_g000011
rosa_roxburghii Rroxscaffold_7G00169530
rosa_rugosa Rorug06G0281000
rosa_samantha Rh6AG392600 Rh6BG400400 Rh6CG406300 Rh6DG393000
rosa_wichuraiana Rw6G034320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 896
AciI CCGC 5 cut(s) 96, 150, 155, 783, 829
AclWI GGATC 3 cut(s) 562, 1041, 1054
AcsI RAATTY 1 cut(s) 1185
AcuI CTGAAG 2 cut(s) 980, 1305
AfaI GTAC 2 cut(s) 371, 959
AfiI CCNNNNNNNGG 3 cut(s) 287, 636, 896
AflIII ACRYGT 1 cut(s) 246
AgeI ACCGGT 1 cut(s) 1067
AgsI TTSAA 5 cut(s) 627, 715, 766, 857, 1190
AjnI CCWGG 5 cut(s) 28, 105, 127, 986, 1403
AleI CACNNNNGTG 1 cut(s) 365
AluBI AGCT 9 cut(s) 91, 185, 278, 419, 792, 809, 893, 1090, 1316
AluI AGCT 9 cut(s) 91, 185, 278, 419, 792, 809, 893, 1090, 1316
Alw21I GWGCWC 1 cut(s) 421
Alw26I GTCTC 1 cut(s) 717
AlwI GGATC 3 cut(s) 562, 1041, 1054
AlwNI CAGNNNCTG 1 cut(s) 896
Ama87I CYCGRG 1 cut(s) 1166
AoxI GGCC 3 cut(s) 31, 48, 130
ApeKI GCWGC 7 cut(s) 88, 98, 389, 602, 893, 917, 1313
ApoI RAATTY 1 cut(s) 1185
AsiGI ACCGGT 1 cut(s) 1067
AspS9I GGNCC 2 cut(s) 310, 617
AsuHPI GGTGA 7 cut(s) 169, 877, 1057, 1243, 1316, 1334, 1364
AsuNHI GCTAGC 1 cut(s) 805
AvaI CYCGRG 1 cut(s) 1166
AvaII GGWCC 2 cut(s) 310, 617
BamHI GGATCC 1 cut(s) 1046
BanII GRGCYC 1 cut(s) 421
BarI GAAGNNNNNNTAC 2 cut(s) 733, 765
Bbv12I GWGCWC 1 cut(s) 421
BbvI GCAGC 7 cut(s) 85, 100, 401, 614, 880, 929, 1325
BccI CCATC 9 cut(s) 579, 691, 696, 906, 961, 1089, 1170, 1354, 1420
BciT130I CCWGG 5 cut(s) 30, 107, 129, 988, 1405
BclI TGATCA 1 cut(s) 864
BcoDI GTCTC 1 cut(s) 717
BfaI CTAG 1 cut(s) 806
BglI GCCNNNNNGGC 1 cut(s) 469
BisI GCNGC 7 cut(s) 89, 99, 390, 603, 894, 918, 1314
BlsI GCNGC 7 cut(s) 90, 100, 391, 604, 895, 919, 1315
Bme1390I CCNGG 5 cut(s) 30, 107, 129, 988, 1405
Bme18I GGWCC 2 cut(s) 310, 617
BmeT110I CYCGRG 1 cut(s) 1166
BmgT120I GGNCC 2 cut(s) 310, 617
BmiI GGNNCC 2 cut(s) 647, 1048
BmrFI CCNGG 5 cut(s) 30, 107, 129, 988, 1405
BmrI ACTGGG 1 cut(s) 619
BmsI GCATC 2 cut(s) 736, 891
BmtI GCTAGC 1 cut(s) 809
BmuI ACTGGG 1 cut(s) 619
BpmI CTGGAG 3 cut(s) 435, 603, 918
BpuEI CTTGAG 1 cut(s) 553
BsaI GGTCTC 1 cut(s) 717
BsaJI CCNNGG 5 cut(s) 105, 630, 953, 1051, 1403
BsaWI WCCGGW 1 cut(s) 1067
Bsc4I CCNNNNNNNGG 3 cut(s) 287, 636, 896
Bse118I RCCGGY 1 cut(s) 1067
Bse1I ACTGG 3 cut(s) 51, 614, 874
BseBI CCWGG 5 cut(s) 30, 107, 129, 988, 1405
BseDI CCNNGG 5 cut(s) 105, 630, 953, 1051, 1403
BseGI GGATG 8 cut(s) 69, 438, 456, 702, 707, 751, 917, 1081
BseLI CCNNNNNNNGG 3 cut(s) 287, 636, 896
BseMII CTCAG 2 cut(s) 195, 1265
BseNI ACTGG 3 cut(s) 51, 614, 874
BseRI GAGGAG 2 cut(s) 735, 1052
BseXI GCAGC 7 cut(s) 85, 100, 401, 614, 880, 929, 1325
BseYI CCCAGC 1 cut(s) 889
BsgI GTGCAG 1 cut(s) 763
BshFI GGCC 3 cut(s) 33, 50, 132
BshTI ACCGGT 1 cut(s) 1067
BsiHKAI GWGCWC 1 cut(s) 421
BsiHKCI CYCGRG 1 cut(s) 1166
BsiSI CCGG 3 cut(s) 942, 1044, 1068
BslI CCNNNNNNNGG 3 cut(s) 287, 636, 896
BsmAI GTCTC 1 cut(s) 717
BsmI GAATGC 1 cut(s) 194
BsnI GGCC 3 cut(s) 33, 50, 132
Bso31I GGTCTC 1 cut(s) 717
BsoBI CYCGRG 1 cut(s) 1166
Bsp1286I GDGCHC 1 cut(s) 421
Bsp143I GATC 3 cut(s) 567, 864, 1046
BspACI CCGC 5 cut(s) 96, 150, 155, 783, 829
BspANI GGCC 3 cut(s) 33, 50, 132
BspCNI CTCAG 2 cut(s) 194, 1266
BspLI GGNNCC 2 cut(s) 647, 1048
BspOI GCTAGC 1 cut(s) 809
BspPI GGATC 3 cut(s) 562, 1041, 1054
BspQI GCTCTTC 1 cut(s) 426
BspTNI GGTCTC 1 cut(s) 717
BsrFI RCCGGY 1 cut(s) 1067
BsrI ACTGG 3 cut(s) 51, 614, 874
BssAI RCCGGY 1 cut(s) 1067
BssECI CCNNGG 5 cut(s) 105, 630, 953, 1051, 1403
BssMI GATC 3 cut(s) 567, 864, 1046
BssT1I CCWWGG 3 cut(s) 630, 953, 1051
Bst2UI CCWGG 5 cut(s) 30, 107, 129, 988, 1405
Bst4CI ACNGT 1 cut(s) 490
Bst6I CTCTTC 5 cut(s) 272, 426, 583, 1281, 1320
BstAPI GCANNNNNTGC 1 cut(s) 200
BstC8I GCNNGC 6 cut(s) 116, 333, 528, 794, 807, 833
BstDEI CTNAG 3 cut(s) 181, 874, 1274
BstF5I GGATG 8 cut(s) 69, 438, 456, 702, 707, 751, 917, 1081
BstKTI GATC 3 cut(s) 570, 867, 1049
BstMAI GTCTC 1 cut(s) 717
BstMBI GATC 3 cut(s) 567, 864, 1046
BstMWI GCNNNNNNNGC 9 cut(s) 80, 191, 200, 302, 469, 755, 802, 879, 1245
BstNI CCWGG 5 cut(s) 30, 107, 129, 988, 1405
BstNSI RCATGY 3 cut(s) 118, 250, 1153
BstSCI CCNGG 5 cut(s) 28, 105, 127, 986, 1403
BstV1I GCAGC 7 cut(s) 85, 100, 401, 614, 880, 929, 1325
BstX2I RGATCY 1 cut(s) 1046
BstXI CCANNNNNNTGG 2 cut(s) 522, 928
BstYI RGATCY 1 cut(s) 1046
BsuRI GGCC 3 cut(s) 33, 50, 132
BtsCI GGATG 8 cut(s) 69, 438, 456, 702, 707, 751, 917, 1081
BtsIMutI CAGTG 1 cut(s) 867
Cac8I GCNNGC 6 cut(s) 116, 333, 528, 794, 807, 833
CaiI CAGNNNCTG 1 cut(s) 896
Cfr10I RCCGGY 1 cut(s) 1067
Cfr13I GGNCC 2 cut(s) 310, 617
Csp6I GTAC 2 cut(s) 370, 958
CspAI ACCGGT 1 cut(s) 1067
CviQI GTAC 2 cut(s) 370, 958
DdeI CTNAG 3 cut(s) 181, 874, 1274
DpnI GATC 3 cut(s) 569, 866, 1048
DpnII GATC 3 cut(s) 567, 864, 1046
Eam1104I CTCTTC 5 cut(s) 272, 426, 583, 1281, 1320
EarI CTCTTC 5 cut(s) 272, 426, 583, 1281, 1320
Ecl136II GAGCTC 1 cut(s) 419
Eco130I CCWWGG 3 cut(s) 630, 953, 1051
Eco24I GRGCYC 1 cut(s) 421
Eco31I GGTCTC 1 cut(s) 717
Eco32I GATATC 1 cut(s) 242
Eco47I GGWCC 2 cut(s) 310, 617
Eco53kI GAGCTC 1 cut(s) 419
Eco57I CTGAAG 2 cut(s) 980, 1305
Eco88I CYCGRG 1 cut(s) 1166
EcoICRI GAGCTC 1 cut(s) 419
EcoRI GAATTC 1 cut(s) 1185
EcoRII CCWGG 5 cut(s) 28, 105, 127, 986, 1403
EcoRV GATATC 1 cut(s) 242
EcoT14I CCWWGG 3 cut(s) 630, 953, 1051
EcoT38I GRGCYC 1 cut(s) 421
ErhI CCWWGG 3 cut(s) 630, 953, 1051
FauNDI CATATG 1 cut(s) 1372
FbaI TGATCA 1 cut(s) 864
Fnu4HI GCNGC 7 cut(s) 89, 99, 390, 603, 894, 918, 1314
FokI GGATG 8 cut(s) 76, 445, 463, 709, 714, 758, 924, 1068
FriOI GRGCYC 1 cut(s) 421
Fsp4HI GCNGC 7 cut(s) 89, 99, 390, 603, 894, 918, 1314
FspBI CTAG 1 cut(s) 806
GluI GCNGC 7 cut(s) 89, 99, 390, 603, 894, 918, 1314
GsaI CCCAGC 1 cut(s) 893
GsuI CTGGAG 3 cut(s) 435, 603, 918
HaeIII GGCC 3 cut(s) 33, 50, 132
HapII CCGG 3 cut(s) 942, 1044, 1068
HincII GTYRAC 1 cut(s) 675
HindII GTYRAC 1 cut(s) 675
HinfI GANTC 3 cut(s) 511, 1059, 1382
HpaII CCGG 3 cut(s) 942, 1044, 1068
HphI GGTGA 7 cut(s) 169, 877, 1057, 1243, 1316, 1334, 1364
Hpy166II GTNNAC 8 cut(s) 178, 263, 370, 675, 960, 976, 1058, 1400
Hpy188I TCNGA 4 cut(s) 848, 999, 1275, 1285
Hpy188III TCNNGA 5 cut(s) 56, 582, 694, 763, 812
Hpy8I GTNNAC 8 cut(s) 178, 263, 370, 675, 960, 976, 1058, 1400
HpyAV CCTTC 3 cut(s) 286, 423, 846
HpyCH4III ACNGT 1 cut(s) 490
HpyCH4IV ACGT 2 cut(s) 1365, 1396
HpyCH4V TGCA 7 cut(s) 101, 118, 389, 780, 882, 907, 1258
HpyF10VI GCNNNNNNNGC 9 cut(s) 80, 191, 200, 302, 469, 755, 802, 879, 1245
HpyF3I CTNAG 3 cut(s) 181, 874, 1274
HpySE526I ACGT 2 cut(s) 1365, 1396
Ksp22I TGATCA 1 cut(s) 864
Kzo9I GATC 3 cut(s) 567, 864, 1046
LguI GCTCTTC 1 cut(s) 426
LmnI GCTCC 5 cut(s) 283, 416, 494, 680, 848
Lsp1109I GCAGC 7 cut(s) 85, 100, 401, 614, 880, 929, 1325
LweI GCATC 2 cut(s) 736, 891
MaeI CTAG 1 cut(s) 806
MaeII ACGT 2 cut(s) 1365, 1396
MaeIII GTNAC 3 cut(s) 1213, 1231, 1366
MalI GATC 3 cut(s) 569, 866, 1048
MboI GATC 3 cut(s) 567, 864, 1046
MflI RGATCY 1 cut(s) 1046
MhlI GDGCHC 1 cut(s) 421
MluCI AATT 5 cut(s) 402, 543, 948, 1096, 1185
MlyI GAGTC 3 cut(s) 520, 1053, 1391
MmeI TCCRAC 1 cut(s) 472
MseI TTAA 1 cut(s) 401
MslI CAYNNNNRTG 4 cut(s) 365, 926, 965, 1032
MspA1I CMGCKG 3 cut(s) 91, 98, 893
MspI CCGG 3 cut(s) 942, 1044, 1068
MspR9I CCNGG 5 cut(s) 30, 107, 129, 988, 1405
Mva1269I GAATGC 1 cut(s) 194
MvaI CCWGG 5 cut(s) 30, 107, 129, 988, 1405
MwoI GCNNNNNNNGC 9 cut(s) 80, 191, 200, 302, 469, 755, 802, 879, 1245
NdeI CATATG 1 cut(s) 1372
NdeII GATC 3 cut(s) 567, 864, 1046
NheI GCTAGC 1 cut(s) 805
NlaIV GGNNCC 2 cut(s) 647, 1048
NmuCI GTSAC 1 cut(s) 1231
NspI RCATGY 3 cut(s) 118, 250, 1153
OliI CACNNNNGTG 1 cut(s) 365
PaeI GCATGC 1 cut(s) 118
PciI ACATGT 1 cut(s) 246
PciSI GCTCTTC 1 cut(s) 426
PctI GAATGC 1 cut(s) 194
PflMI CCANNNNNTGG 1 cut(s) 896
PinAI ACCGGT 1 cut(s) 1067
PkrI GCNGC 7 cut(s) 90, 100, 391, 604, 895, 919, 1315
PleI GAGTC 3 cut(s) 519, 1053, 1390
PpsI GAGTC 3 cut(s) 519, 1053, 1390
PscI ACATGT 1 cut(s) 246
Psp124BI GAGCTC 1 cut(s) 421
Psp6I CCWGG 5 cut(s) 28, 105, 127, 986, 1403
PspFI CCCAGC 1 cut(s) 889
PspGI CCWGG 5 cut(s) 28, 105, 127, 986, 1403
PspN4I GGNNCC 2 cut(s) 647, 1048
PspPI GGNCC 2 cut(s) 310, 617
PstNI CAGNNNCTG 1 cut(s) 896
PsuI RGATCY 1 cut(s) 1046
PvuII CAGCTG 2 cut(s) 91, 893
RsaI GTAC 2 cut(s) 371, 959
RsaNI GTAC 2 cut(s) 370, 958
RseI CAYNNNNRTG 4 cut(s) 365, 926, 965, 1032
SacI GAGCTC 1 cut(s) 421
SapI GCTCTTC 1 cut(s) 426
SaqAI TTAA 1 cut(s) 401
SatI GCNGC 7 cut(s) 89, 99, 390, 603, 894, 918, 1314
Sau3AI GATC 3 cut(s) 567, 864, 1046
Sau96I GGNCC 2 cut(s) 310, 617
SchI GAGTC 3 cut(s) 520, 1053, 1391
ScrFI CCNGG 5 cut(s) 30, 107, 129, 988, 1405
SduI GDGCHC 1 cut(s) 421
SfaNI GCATC 2 cut(s) 736, 891
SinI GGWCC 2 cut(s) 310, 617
SmiMI CAYNNNNRTG 4 cut(s) 365, 926, 965, 1032
SmlI CTYRAG 1 cut(s) 532
SmoI CTYRAG 1 cut(s) 532
SphI GCATGC 1 cut(s) 118
Sse9I AATT 5 cut(s) 402, 543, 948, 1096, 1185
SsiI CCGC 5 cut(s) 96, 150, 155, 783, 829
SspI AATATT 1 cut(s) 1420
SspMI CTAG 1 cut(s) 806
SstI GAGCTC 1 cut(s) 421
StyD4I CCNGG 5 cut(s) 28, 105, 127, 986, 1403
StyI CCWWGG 3 cut(s) 630, 953, 1051
TaaI ACNGT 1 cut(s) 490
TaiI ACGT 2 cut(s) 1368, 1399
TaqII GACCGA 1 cut(s) 605
TasI AATT 5 cut(s) 402, 543, 948, 1096, 1185
TatI WGTACW 1 cut(s) 369
Tru1I TTAA 1 cut(s) 401
Tru9I TTAA 1 cut(s) 401
TscAI CASTG 1 cut(s) 874
TseFI GTSAC 1 cut(s) 1231
TseI GCWGC 7 cut(s) 88, 98, 389, 602, 893, 917, 1313
Tsp45I GTSAC 1 cut(s) 1231
TspDTI ATGAA 6 cut(s) 17, 178, 449, 471, 741, 1323
TspRI CASTG 1 cut(s) 874
Van91I CCANNNNNTGG 1 cut(s) 896
VpaK11BI GGWCC 2 cut(s) 310, 617
XapI RAATTY 1 cut(s) 1185
XceI RCATGY 3 cut(s) 118, 250, 1153
XcmI CCANNNNNNNNNTGG 1 cut(s) 578
XspI CTAG 1 cut(s) 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.