Rh6AG392600

Ammonium transporter 3 member 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0016764
Physical Location & Seq
Reverse (-)
59134699 .. 59135205
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG392600.1

Sequence Viewer

Length: 507 bp
ATGGGGCTTCTCTCCGGCTCAATTCCTTGGTACACCATGATGGTTGTCCACAAGAAATCCAGGCTTCTTCAGAAAGTTGATGACACAATGGCTGTCCTGCACACTCATGCTATCGCCGGATCCCTTGGTGGACTCCTCACCGGTTTCTTTGCCCATCCAAAGCTCAATAATTTGTTCTATGGCTACTACGCTCAATATGTTGGTCTATTTTATGGTTTTGACATGCGAAAAGCCCATCTCGGGCTTCGTCAAGTAGGAATTCAACTTATCGGGGTAATCTTCGTTGTTACACTAAATGTTGTGGTGACAAGCCTCGTATGCCTTTTGGTGCAACTCATTGTGCCTCTGAGAATGTCTGAAGAGGATTTGGAGATTGGAGATGAAGCAGCCCATGGTGAAGAGGCTTATGCTATCTGGGGTCAGGGTGAAAAGATGGACGTAGCATATGATTTAGAGTCATCTGCAAAACTTAAACCCAGGTCTGCTGGAAATATTGAGATGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ammonium_transp

Protein Analysis

168

Amino Acids

18.5

Weight (kDa)

6.04

Isoelectric Point (pI)

37.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ammonium_transp PF00909 13 - 136 7.8e-16 Ammonium Transporter Family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016764)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29590
malus_domestica MD08G1145400.v1.1 MD15G1121000.v1.1
prunus_persica Prupe.1G473600_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298571
rosa_laevigata RLG00000011503
rosa_multiflora Rmu_sc0004500.1_g000011
rosa_roxburghii Rroxscaffold_7G00169530
rosa_rugosa Rorug06G0281000
rosa_samantha Rh6AG392600 Rh6BG400400 Rh6CG406300 Rh6DG393000
rosa_wichuraiana Rw6G034320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 114, 127
AcsI RAATTY 1 cut(s) 258
AcuI CTGAAG 2 cut(s) 53, 378
AfaI GTAC 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 240
AgeI ACCGGT 1 cut(s) 140
AgsI TTSAA 1 cut(s) 263
AjnI CCWGG 2 cut(s) 59, 476
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
AlwI GGATC 2 cut(s) 114, 127
Ama87I CYCGRG 1 cut(s) 239
ApeKI GCWGC 1 cut(s) 386
ApoI RAATTY 1 cut(s) 258
AsiGI ACCGGT 1 cut(s) 140
AsuHPI GGTGA 4 cut(s) 130, 316, 407, 437
AvaI CYCGRG 1 cut(s) 239
BamHI GGATCC 1 cut(s) 119
BbvI GCAGC 1 cut(s) 398
BccI CCATC 5 cut(s) 34, 162, 243, 427, 493
BciT130I CCWGG 2 cut(s) 61, 478
BisI GCNGC 1 cut(s) 387
BlsI GCNGC 1 cut(s) 388
Bme1390I CCNGG 2 cut(s) 61, 478
BmeT110I CYCGRG 1 cut(s) 239
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 2 cut(s) 61, 478
BsaJI CCNNGG 4 cut(s) 26, 124, 391, 476
BsaWI WCCGGW 1 cut(s) 140
Bsc4I CCNNNNNNNGG 1 cut(s) 240
Bse118I RCCGGY 1 cut(s) 140
BseBI CCWGG 2 cut(s) 61, 478
BseDI CCNNGG 4 cut(s) 26, 124, 391, 476
BseGI GGATG 1 cut(s) 154
BseLI CCNNNNNNNGG 1 cut(s) 240
BseMII CTCAG 1 cut(s) 338
BseRI GAGGAG 1 cut(s) 125
BseXI GCAGC 1 cut(s) 398
BsgI GTGCAG 1 cut(s) 83
BshTI ACCGGT 1 cut(s) 140
BsiHKCI CYCGRG 1 cut(s) 239
BsiSI CCGG 3 cut(s) 15, 117, 141
BslI CCNNNNNNNGG 1 cut(s) 240
BsoBI CYCGRG 1 cut(s) 239
Bsp143I GATC 1 cut(s) 119
Bsp19I CCATGG 1 cut(s) 391
BspCNI CTCAG 1 cut(s) 339
BspLI GGNNCC 1 cut(s) 121
BspPI GGATC 2 cut(s) 114, 127
BsrFI RCCGGY 1 cut(s) 140
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 4 cut(s) 26, 124, 391, 476
BssMI GATC 1 cut(s) 119
BssT1I CCWWGG 3 cut(s) 26, 124, 391
Bst2UI CCWGG 2 cut(s) 61, 478
Bst6I CTCTTC 2 cut(s) 354, 393
BstDEI CTNAG 1 cut(s) 347
BstDSI CCRYGG 1 cut(s) 391
BstF5I GGATG 1 cut(s) 154
BstKTI GATC 1 cut(s) 122
BstMBI GATC 1 cut(s) 119
BstMWI GCNNNNNNNGC 1 cut(s) 318
BstNI CCWGG 2 cut(s) 61, 478
BstNSI RCATGY 1 cut(s) 226
BstSCI CCNGG 2 cut(s) 59, 476
BstV1I GCAGC 1 cut(s) 398
BstX2I RGATCY 1 cut(s) 119
BstYI RGATCY 1 cut(s) 119
BtgI CCRYGG 1 cut(s) 391
BtsCI GGATG 1 cut(s) 154
Cfr10I RCCGGY 1 cut(s) 140
Csp6I GTAC 1 cut(s) 31
CspAI ACCGGT 1 cut(s) 140
CviAII CATG 4 cut(s) 37, 107, 223, 392
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 1 cut(s) 347
DpnI GATC 1 cut(s) 121
DpnII GATC 1 cut(s) 119
Eam1104I CTCTTC 2 cut(s) 354, 393
EarI CTCTTC 2 cut(s) 354, 393
Eco130I CCWWGG 3 cut(s) 26, 124, 391
Eco57I CTGAAG 2 cut(s) 53, 378
Eco88I CYCGRG 1 cut(s) 239
EcoRI GAATTC 1 cut(s) 258
EcoRII CCWGG 2 cut(s) 59, 476
EcoT14I CCWWGG 3 cut(s) 26, 124, 391
ErhI CCWWGG 3 cut(s) 26, 124, 391
FaeI CATG 4 cut(s) 40, 110, 226, 395
FatI CATG 4 cut(s) 36, 106, 222, 391
FauNDI CATATG 1 cut(s) 445
Fnu4HI GCNGC 1 cut(s) 387
FokI GGATG 1 cut(s) 141
Fsp4HI GCNGC 1 cut(s) 387
GluI GCNGC 1 cut(s) 387
HapII CCGG 3 cut(s) 15, 117, 141
Hin1II CATG 4 cut(s) 40, 110, 226, 395
HinfI GANTC 2 cut(s) 132, 455
HpaII CCGG 3 cut(s) 15, 117, 141
HphI GGTGA 4 cut(s) 130, 316, 407, 437
Hpy166II GTNNAC 3 cut(s) 33, 49, 131
Hpy188I TCNGA 3 cut(s) 72, 348, 358
Hpy8I GTNNAC 3 cut(s) 33, 49, 131
HpyCH4IV ACGT 1 cut(s) 438
HpyCH4V TGCA 3 cut(s) 100, 331, 464
HpyF10VI GCNNNNNNNGC 1 cut(s) 318
HpyF3I CTNAG 1 cut(s) 347
HpySE526I ACGT 1 cut(s) 438
Hsp92II CATG 4 cut(s) 40, 110, 226, 395
Kzo9I GATC 1 cut(s) 119
Lsp1109I GCAGC 1 cut(s) 398
MaeII ACGT 1 cut(s) 438
MaeIII GTNAC 2 cut(s) 286, 304
MalI GATC 1 cut(s) 121
MboI GATC 1 cut(s) 119
MboII GAAGA 4 cut(s) 59, 271, 371, 410
MflI RGATCY 1 cut(s) 119
MluCI AATT 3 cut(s) 21, 169, 258
MlyI GAGTC 2 cut(s) 126, 464
MnlI CCTC 5 cut(s) 146, 323, 354, 355, 394
MseI TTAA 1 cut(s) 471
MslI CAYNNNNRTG 2 cut(s) 38, 105
MspI CCGG 3 cut(s) 15, 117, 141
MspR9I CCNGG 2 cut(s) 61, 478
MvaI CCWGG 2 cut(s) 61, 478
MwoI GCNNNNNNNGC 1 cut(s) 318
NcoI CCATGG 1 cut(s) 391
NdeI CATATG 1 cut(s) 445
NdeII GATC 1 cut(s) 119
NlaIII CATG 4 cut(s) 40, 110, 226, 395
NlaIV GGNNCC 1 cut(s) 121
NmuCI GTSAC 1 cut(s) 304
NspI RCATGY 1 cut(s) 226
PinAI ACCGGT 1 cut(s) 140
PkrI GCNGC 1 cut(s) 388
PleI GAGTC 2 cut(s) 126, 463
PpsI GAGTC 2 cut(s) 126, 463
Psp6I CCWGG 2 cut(s) 59, 476
PspGI CCWGG 2 cut(s) 59, 476
PspN4I GGNNCC 1 cut(s) 121
PsuI RGATCY 1 cut(s) 119
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
RseI CAYNNNNRTG 2 cut(s) 38, 105
SaqAI TTAA 1 cut(s) 471
SatI GCNGC 1 cut(s) 387
Sau3AI GATC 1 cut(s) 119
SchI GAGTC 2 cut(s) 126, 464
ScrFI CCNGG 2 cut(s) 61, 478
SetI ASST 3 cut(s) 165, 441, 482
SmiMI CAYNNNNRTG 2 cut(s) 38, 105
Sse9I AATT 3 cut(s) 21, 169, 258
SspI AATATT 1 cut(s) 493
StyD4I CCNGG 2 cut(s) 59, 476
StyI CCWWGG 3 cut(s) 26, 124, 391
TaiI ACGT 1 cut(s) 441
TasI AATT 3 cut(s) 21, 169, 258
Tru1I TTAA 1 cut(s) 471
Tru9I TTAA 1 cut(s) 471
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 1 cut(s) 386
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 1 cut(s) 396
XapI RAATTY 1 cut(s) 258
XceI RCATGY 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.