Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0018662

Physical Location & Seq

Genomic Coordinates Forward (+)

15504664 .. 15509099

Gene Structure 4436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012126

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGATGATGATCTCAAGCTTGACGGATGAAGCTTGGGGAGTAGGGAAGCTGAGGCACAAGAGGCTTGCCAATTTGATTAGATATTGCTGCGACGGCGACGAGAGGCTGCTGGAAGCGGGTGAAGGTTTGAAAGGGCCCAGCAAAGTTTTGTTTGAAGATAAGGATGTAGTTTCTGGGGTTAGTTACAGTTTCTGTGAGAATCAAGATGATAAGGAATCTGGAAATGTGGGAGACACTACTGATATAGTGGAAAGAACTGAAAATGGAACCAAATATGAGAGCGAAGAAGGAGATATAGAATTTCATAATTTTTATGGTTTGGTACGGGAGCAACTTAACCAAGCATTGATCCAACATGAACAGAATGTAGTGTCTCAGTCAAGGAAAGTAACAGATCAGAGAATAAAAGAGATCGAATATGTAAAATCAAAACATCCTATGATTAGAGCTAAAGCATACATGACTTTTGCACCACCTAACTCACAGTTGGTGAAGGAGTTGAAACTGCGAACGAAAGAGGTGGACATGTGGTCGGTGGAACTCACAAGGATTCTGATTTATCTTGGAGAAAATGAGAAACATGGAGGCCTCACTATCCAAAGCCAGCCGTGCTTTCCCAGACTGCTCTGCCATGGCCACAAAACTACGTTCTATGACCAGTTGACCACACTGACTGCAGAGTACTTTGCTCTGGAGTCCAAGGAAAGGCAATTTCCTAACCGACACAAGTTGCATGATCCACAGCTCTACCATTGTGCTGTCTTCTCCGACAATGTTCTGGCATGTGCAGTGGTTGTGAACTCCACTGTTTCCACTGCCATGGAACCAGAGAAAATTGTTTTCCATGTGGTGACTGATTCACTCAATTTTCCAGCATTGTCTATCCTCCTGGAAAAAGCCACTATCCAAGTCCAGAGCATAGAGAGTTTTGTGACAAGCGTAGAGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

317

Amino Acids

35.91

Weight (kDa)

5.52

Isoelectric Point (pI)

41.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018662)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000012126
rosa_multiflora	Rmu_co8382315.1_g000001 Rmu_sc0003735.1_g000006
rosa_roxburghii	Rroxscaffold_7G00176160
rosa_rugosa	Rorug06G0218600
rosa_samantha	Rh6AG330500 Rh6BG337300 Rh6CG343500 Rh6DG330800
rosa_wichuraiana	Rw6G028690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	116
AclWI	GGATC	2 cut(s)	343, 731
AcoI	YGGCCR	1 cut(s)	634
AcsI	RAATTY	1 cut(s)	299
AfaI	GTAC	2 cut(s)	324, 683
AfiI	CCNNNNNNNGG	1 cut(s)	705
AflIII	ACRYGT	1 cut(s)	525
AgsI	TTSAA	3 cut(s)	130, 155, 502
AhdI	GACNNNNNGTC	1 cut(s)	529
AjnI	CCWGG	1 cut(s)	888
AluBI	AGCT	6 cut(s)	18, 32, 49, 449, 745, 948
AluI	AGCT	6 cut(s)	18, 32, 49, 449, 745, 948
Alw26I	GTCTC	2 cut(s)	225, 378
AlwI	GGATC	2 cut(s)	343, 731
AlwNI	CAGNNNCTG	1 cut(s)	192
AoxI	GGCC	3 cut(s)	134, 586, 634
ApaI	GGGCCC	1 cut(s)	138
ApeKI	GCWGC	2 cut(s)	87, 106
ApoI	RAATTY	1 cut(s)	299
AspS9I	GGNCC	2 cut(s)	134, 135
AsuHPI	GGTGA	3 cut(s)	131, 502, 862
BaeGI	GKGCMC	1 cut(s)	138
BalI	TGGCCA	1 cut(s)	636
BanII	GRGCYC	1 cut(s)	138
BbsI	GAAGAC	1 cut(s)	754
BbvCI	CCTCAGC	1 cut(s)	50
BbvI	GCAGC	2 cut(s)	74, 93
BceAI	ACGGC	2 cut(s)	109, 592
BciT130I	CCWGG	1 cut(s)	890
BcoDI	GTCTC	2 cut(s)	225, 378
BfmI	CTRYAG	1 cut(s)	675
BisI	GCNGC	2 cut(s)	88, 107
BlsI	GCNGC	2 cut(s)	89, 108
BmcAI	AGTACT	1 cut(s)	683
Bme1390I	CCNGG	1 cut(s)	890
BmeRI	GACNNNNNGTC	1 cut(s)	529
BmgT120I	GGNCC	2 cut(s)	134, 135
BmiI	GGNNCC	3 cut(s)	136, 268, 825
BmrFI	CCNGG	1 cut(s)	890
BpiI	GAAGAC	1 cut(s)	754
BpmI	CTGGAG	1 cut(s)	713
Bpu10I	CCTNAGC	1 cut(s)	50
BsaBI	GATNNNNATC	1 cut(s)	8
BsaJI	CCNNGG	3 cut(s)	631, 699, 819
Bsc4I	CCNNNNNNNGG	1 cut(s)	705
Bse1I	ACTGG	1 cut(s)	658
Bse8I	GATNNNNATC	1 cut(s)	8
BseBI	CCWGG	1 cut(s)	890
BseDI	CCNNGG	3 cut(s)	631, 699, 819
BseGI	GGATG	3 cut(s)	31, 169, 433
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	1 cut(s)	705
BseMII	CTCAG	2 cut(s)	41, 389
BseNI	ACTGG	1 cut(s)	658
BseSI	GKGCMC	1 cut(s)	138
BseXI	GCAGC	2 cut(s)	74, 93
BseYI	CCCAGC	1 cut(s)	137
BsgI	GTGCAG	1 cut(s)	807
BshFI	GGCC	3 cut(s)	136, 588, 636
BslI	CCNNNNNNNGG	1 cut(s)	705
BsmAI	GTCTC	2 cut(s)	225, 378
BsnI	GGCC	3 cut(s)	136, 588, 636
Bsp120I	GGGCCC	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	5 cut(s)	9, 348, 394, 411, 736
Bsp19I	CCATGG	2 cut(s)	631, 819
BspACI	CCGC	1 cut(s)	116
BspANI	GGCC	3 cut(s)	136, 588, 636
BspCNI	CTCAG	2 cut(s)	42, 388
BspLI	GGNNCC	3 cut(s)	136, 268, 825
BspMAI	CTGCAG	1 cut(s)	679
BspPI	GGATC	2 cut(s)	343, 731
BsrI	ACTGG	1 cut(s)	658
BssECI	CCNNGG	3 cut(s)	631, 699, 819
BssMI	GATC	5 cut(s)	9, 348, 394, 411, 736
BssT1I	CCWWGG	3 cut(s)	631, 699, 819
Bst2UI	CCWGG	1 cut(s)	890
Bst4CI	ACNGT	3 cut(s)	188, 486, 808
BstC8I	GCNNGC	2 cut(s)	66, 605
BstDEI	CTNAG	2 cut(s)	50, 375
BstDSI	CCRYGG	2 cut(s)	631, 819
BstF5I	GGATG	3 cut(s)	31, 169, 433
BstKTI	GATC	5 cut(s)	12, 351, 397, 414, 739
BstMAI	GTCTC	2 cut(s)	225, 378
BstMBI	GATC	5 cut(s)	9, 348, 394, 411, 736
BstMWI	GCNNNNNNNGC	4 cut(s)	61, 93, 609, 945
BstNI	CCWGG	1 cut(s)	890
BstNSI	RCATGY	2 cut(s)	529, 786
BstSCI	CCNGG	1 cut(s)	888
BstSFI	CTRYAG	1 cut(s)	675
BstSLI	GKGCMC	1 cut(s)	138
BstV1I	GCAGC	2 cut(s)	74, 93
BstV2I	GAAGAC	1 cut(s)	754
BstXI	CCANNNNNNTGG	1 cut(s)	820
BsuRI	GGCC	3 cut(s)	136, 588, 636
BtgI	CCRYGG	2 cut(s)	631, 819
BtsCI	GGATG	3 cut(s)	31, 169, 433
BtsI	GCAGTG	2 cut(s)	795, 813
BtsIMutI	CAGTG	4 cut(s)	668, 795, 804, 813
Cac8I	GCNNGC	2 cut(s)	66, 605
CaiI	CAGNNNCTG	1 cut(s)	192
Cfr13I	GGNCC	2 cut(s)	134, 135
Csp6I	GTAC	2 cut(s)	323, 682
CviAII	CATG	9 cut(s)	356, 460, 526, 581, 632, 734, 783, 820, 845
CviQI	GTAC	2 cut(s)	323, 682
DdeI	CTNAG	2 cut(s)	50, 375
DpnI	GATC	5 cut(s)	11, 350, 396, 413, 738
DpnII	GATC	5 cut(s)	9, 348, 394, 411, 736
DriI	GACNNNNNGTC	1 cut(s)	529
EaeI	YGGCCR	1 cut(s)	634
Eam1105I	GACNNNNNGTC	1 cut(s)	529
Eco130I	CCWWGG	3 cut(s)	631, 699, 819
Eco147I	AGGCCT	1 cut(s)	588
Eco24I	GRGCYC	1 cut(s)	138
EcoO109I	RGGNCCY	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	888
EcoT14I	CCWWGG	3 cut(s)	631, 699, 819
EcoT38I	GRGCYC	1 cut(s)	138
ErhI	CCWWGG	3 cut(s)	631, 699, 819
FaeI	CATG	9 cut(s)	359, 463, 529, 584, 635, 737, 786, 823, 848
FatI	CATG	9 cut(s)	355, 459, 525, 580, 631, 733, 782, 819, 844
FauI	CCCGC	1 cut(s)	109
Fnu4HI	GCNGC	2 cut(s)	88, 107
FokI	GGATG	3 cut(s)	38, 176, 420
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	2 cut(s)	88, 107
GluI	GCNGC	2 cut(s)	88, 107
GsaI	CCCAGC	1 cut(s)	141
GsuI	CTGGAG	1 cut(s)	713
HaeIII	GGCC	3 cut(s)	136, 588, 636
Hin1II	CATG	9 cut(s)	359, 463, 529, 584, 635, 737, 786, 823, 848
HincII	GTYRAC	1 cut(s)	663
HindII	GTYRAC	1 cut(s)	663
HindIII	AAGCTT	2 cut(s)	16, 30
HinfI	GANTC	5 cut(s)	199, 215, 550, 695, 857
HphI	GGTGA	3 cut(s)	131, 502, 862
Hpy166II	GTNNAC	3 cut(s)	523, 663, 799
Hpy188I	TCNGA	3 cut(s)	399, 555, 769
Hpy188III	TCNNGA	4 cut(s)	203, 219, 692, 913
Hpy8I	GTNNAC	3 cut(s)	523, 663, 799
Hpy99I	CGWCG	2 cut(s)	95, 101
HpyAV	CCTTC	3 cut(s)	116, 281, 487
HpyCH4III	ACNGT	3 cut(s)	188, 486, 808
HpyCH4IV	ACGT	1 cut(s)	647
HpyCH4V	TGCA	4 cut(s)	470, 677, 733, 788
HpyF10VI	GCNNNNNNNGC	4 cut(s)	61, 93, 609, 945
HpyF3I	CTNAG	2 cut(s)	50, 375
HpySE526I	ACGT	1 cut(s)	647
Hsp92II	CATG	9 cut(s)	359, 463, 529, 584, 635, 737, 786, 823, 848
Kzo9I	GATC	5 cut(s)	9, 348, 394, 411, 736
LmnI	GCTCC	1 cut(s)	328
Lsp1109I	GCAGC	2 cut(s)	74, 93
MaeII	ACGT	1 cut(s)	647
MaeIII	GTNAC	4 cut(s)	182, 388, 850, 931
MalI	GATC	5 cut(s)	11, 350, 396, 413, 738
MboI	GATC	5 cut(s)	9, 348, 394, 411, 736
MboII	GAAGA	3 cut(s)	167, 296, 754
MhlI	GDGCHC	1 cut(s)	138
MlsI	TGGCCA	1 cut(s)	636
MluCI	AATT	6 cut(s)	70, 299, 307, 710, 834, 865
MluNI	TGGCCA	1 cut(s)	636
MlyI	GAGTC	1 cut(s)	704
MmeI	TCCRAC	2 cut(s)	376, 792
MnlI	CCTC	7 cut(s)	45, 54, 96, 511, 578, 599, 896
Mox20I	TGGCCA	1 cut(s)	636
MscI	TGGCCA	1 cut(s)	636
MseI	TTAA	1 cut(s)	336
MslI	CAYNNNNRTG	1 cut(s)	818
Msp20I	TGGCCA	1 cut(s)	636
MspR9I	CCNGG	1 cut(s)	890
MvaI	CCWGG	1 cut(s)	890
MwoI	GCNNNNNNNGC	4 cut(s)	61, 93, 609, 945
NcoI	CCATGG	2 cut(s)	631, 819
NdeII	GATC	5 cut(s)	9, 348, 394, 411, 736
NlaIII	CATG	9 cut(s)	359, 463, 529, 584, 635, 737, 786, 823, 848
NlaIV	GGNNCC	3 cut(s)	136, 268, 825
NmuCI	GTSAC	2 cut(s)	850, 931
NspI	RCATGY	2 cut(s)	529, 786
PceI	AGGCCT	1 cut(s)	588
PciI	ACATGT	1 cut(s)	525
PfeI	GAWTC	4 cut(s)	199, 215, 550, 857
PfoI	TCCNGGA	1 cut(s)	888
PkrI	GCNGC	2 cut(s)	89, 108
PleI	GAGTC	1 cut(s)	703
PpsI	GAGTC	1 cut(s)	703
PscI	ACATGT	1 cut(s)	525
Psp6I	CCWGG	1 cut(s)	888
PspFI	CCCAGC	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	888
PspN4I	GGNNCC	3 cut(s)	136, 268, 825
PspOMI	GGGCCC	1 cut(s)	134
PspPI	GGNCC	2 cut(s)	134, 135
PstI	CTGCAG	1 cut(s)	679
PstNI	CAGNNNCTG	1 cut(s)	192
RsaI	GTAC	2 cut(s)	324, 683
RsaNI	GTAC	2 cut(s)	323, 682
RseI	CAYNNNNRTG	1 cut(s)	818
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	2 cut(s)	88, 107
Sau3AI	GATC	5 cut(s)	9, 348, 394, 411, 736
Sau96I	GGNCC	2 cut(s)	134, 135
ScaI	AGTACT	1 cut(s)	683
SchI	GAGTC	1 cut(s)	704
ScrFI	CCNGG	1 cut(s)	890
SduI	GDGCHC	1 cut(s)	138
SfcI	CTRYAG	1 cut(s)	675
SmiMI	CAYNNNNRTG	1 cut(s)	818
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
Sse9I	AATT	6 cut(s)	70, 299, 307, 710, 834, 865
SseBI	AGGCCT	1 cut(s)	588
SsiI	CCGC	1 cut(s)	116
StuI	AGGCCT	1 cut(s)	588
StyD4I	CCNGG	1 cut(s)	888
StyI	CCWWGG	3 cut(s)	631, 699, 819
TaaI	ACNGT	3 cut(s)	188, 486, 808
TaiI	ACGT	1 cut(s)	650
TaqI	TCGA	1 cut(s)	414
TasI	AATT	6 cut(s)	70, 299, 307, 710, 834, 865
TatI	WGTACW	1 cut(s)	681
TfiI	GAWTC	4 cut(s)	199, 215, 550, 857
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	4 cut(s)	675, 795, 811, 820
TseFI	GTSAC	2 cut(s)	850, 931
TseI	GCWGC	2 cut(s)	87, 106
Tsp45I	GTSAC	2 cut(s)	850, 931
TspDTI	ATGAA	3 cut(s)	42, 293, 372
TspGWI	ACGGA	1 cut(s)	38
TspRI	CASTG	4 cut(s)	675, 795, 811, 820
XapI	RAATTY	1 cut(s)	299
XceI	RCATGY	2 cut(s)	529, 786
ZrmI	AGTACT	1 cut(s)	683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.