Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003735.1

Orthogroup ID

OG0018662

Physical Location & Seq

Genomic Coordinates Reverse (-)

22700 .. 23398

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003735.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atgatatttcagtgctttgcagaaaatgagaaacatggaggcctcactatccaaagcagccgtgctttcccagactgctctgctatggccacaaaactacgttctatgaccacaccgactgcagagtactttgctctcgagtccaaggaaaggcaatttcctaaccgacacaagttgcatgatacacagctctatcattgtgctgtcttctccgacaatgttctggcatgtgcagtggttgtgaactccactgtttccactgccatggaaccagagaaaattgttttccatgtggtgactgattcacccagttttccagcattgtccatcctcctggaaaaagccaccatccaagtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

119

Amino Acids

13.22

Weight (kDa)

6.17

Isoelectric Point (pI)

44.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018662)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000012126
rosa_multiflora	Rmu_co8382315.1_g000001 Rmu_sc0003735.1_g000006
rosa_roxburghii	Rroxscaffold_7G00176160
rosa_rugosa	Rorug06G0218600
rosa_samantha	Rh6AG330500 Rh6BG337300 Rh6CG343500 Rh6DG330800
rosa_wichuraiana	Rw6G028690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	87
AfaI	GTAC	1 cut(s)	128
AfiI	CCNNNNNNNGG	1 cut(s)	150
AjnI	CCWGG	1 cut(s)	333
AluBI	AGCT	1 cut(s)	190
AluI	AGCT	1 cut(s)	190
Ama87I	CYCGRG	1 cut(s)	137
AoxI	GGCC	2 cut(s)	40, 87
ApeKI	GCWGC	1 cut(s)	57
AsuHPI	GGTGA	2 cut(s)	297, 307
AvaI	CYCGRG	1 cut(s)	137
BalI	TGGCCA	1 cut(s)	89
BbsI	GAAGAC	1 cut(s)	199
BbvI	GCAGC	1 cut(s)	69
BccI	CCATC	2 cut(s)	335, 356
BceAI	ACGGC	1 cut(s)	45
BciT130I	CCWGG	1 cut(s)	335
BfmI	CTRYAG	1 cut(s)	120
BisI	GCNGC	1 cut(s)	58
BlsI	GCNGC	1 cut(s)	59
BmcAI	AGTACT	1 cut(s)	128
Bme1390I	CCNGG	1 cut(s)	335
BmeT110I	CYCGRG	1 cut(s)	137
BmiI	GGNNCC	1 cut(s)	270
BmrFI	CCNGG	1 cut(s)	335
BmrI	ACTGGG	1 cut(s)	303
BmuI	ACTGGG	1 cut(s)	303
BpiI	GAAGAC	1 cut(s)	199
BsaJI	CCNNGG	2 cut(s)	144, 264
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
Bse1I	ACTGG	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	335
BseDI	CCNNGG	2 cut(s)	144, 264
BseGI	GGATG	2 cut(s)	327, 348
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	309
BseXI	GCAGC	1 cut(s)	69
BsgI	GTGCAG	1 cut(s)	252
BshFI	GGCC	2 cut(s)	42, 89
BsiHKCI	CYCGRG	1 cut(s)	137
BslI	CCNNNNNNNGG	1 cut(s)	150
BsnI	GGCC	2 cut(s)	42, 89
BsoBI	CYCGRG	1 cut(s)	137
Bsp19I	CCATGG	1 cut(s)	264
BspANI	GGCC	2 cut(s)	42, 89
BspLI	GGNNCC	1 cut(s)	270
BspMAI	CTGCAG	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	309
BssECI	CCNNGG	2 cut(s)	144, 264
BssT1I	CCWWGG	2 cut(s)	144, 264
Bst2UI	CCWGG	1 cut(s)	335
Bst4CI	ACNGT	1 cut(s)	253
BstDSI	CCRYGG	1 cut(s)	264
BstF5I	GGATG	2 cut(s)	327, 348
BstNI	CCWGG	1 cut(s)	335
BstNSI	RCATGY	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	333
BstSFI	CTRYAG	1 cut(s)	120
BstV1I	GCAGC	1 cut(s)	69
BstV2I	GAAGAC	1 cut(s)	199
BstXI	CCANNNNNNTGG	2 cut(s)	265, 334
BsuRI	GGCC	2 cut(s)	42, 89
BtgI	CCRYGG	1 cut(s)	264
BtsCI	GGATG	2 cut(s)	327, 348
BtsI	GCAGTG	2 cut(s)	240, 258
BtsIMutI	CAGTG	4 cut(s)	17, 240, 249, 258
Csp6I	GTAC	1 cut(s)	127
CviAII	CATG	5 cut(s)	35, 179, 228, 265, 290
CviJI	RGCY	5 cut(s)	42, 60, 89, 190, 344
CviKI_1	RGCY	5 cut(s)	42, 60, 89, 190, 344
CviQI	GTAC	1 cut(s)	127
EaeI	YGGCCR	1 cut(s)	87
Eco130I	CCWWGG	2 cut(s)	144, 264
Eco147I	AGGCCT	1 cut(s)	42
Eco88I	CYCGRG	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	333
EcoT14I	CCWWGG	2 cut(s)	144, 264
ErhI	CCWWGG	2 cut(s)	144, 264
FaeI	CATG	5 cut(s)	38, 182, 231, 268, 293
FaiI	YATR	7 cut(s)	36, 86, 107, 180, 229, 266, 291
FatI	CATG	5 cut(s)	34, 178, 227, 264, 289
Fnu4HI	GCNGC	1 cut(s)	58
FokI	GGATG	2 cut(s)	314, 335
Fsp4HI	GCNGC	1 cut(s)	58
GluI	GCNGC	1 cut(s)	58
HaeIII	GGCC	2 cut(s)	42, 89
Hin1II	CATG	5 cut(s)	38, 182, 231, 268, 293
HinfI	GANTC	2 cut(s)	140, 302
HphI	GGTGA	2 cut(s)	297, 307
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	1 cut(s)	137
Hpy8I	GTNNAC	1 cut(s)	244
HpyCH4III	ACNGT	1 cut(s)	253
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	4 cut(s)	20, 122, 178, 233
HpySE526I	ACGT	1 cut(s)	100
Hsp92II	CATG	5 cut(s)	38, 182, 231, 268, 293
LpnPI	CCDG	7 cut(s)	84, 209, 285, 320, 322, 330, 347
Lsp1109I	GCAGC	1 cut(s)	69
MaeII	ACGT	1 cut(s)	100
MaeIII	GTNAC	1 cut(s)	295
MboII	GAAGA	1 cut(s)	199
MlsI	TGGCCA	1 cut(s)	89
MluCI	AATT	2 cut(s)	155, 279
MluNI	TGGCCA	1 cut(s)	89
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	3 cut(s)	32, 53, 341
Mox20I	TGGCCA	1 cut(s)	89
MscI	TGGCCA	1 cut(s)	89
MslI	CAYNNNNRTG	1 cut(s)	263
Msp20I	TGGCCA	1 cut(s)	89
MspR9I	CCNGG	1 cut(s)	335
MvaI	CCWGG	1 cut(s)	335
NcoI	CCATGG	1 cut(s)	264
NlaIII	CATG	5 cut(s)	38, 182, 231, 268, 293
NlaIV	GGNNCC	1 cut(s)	270
NmuCI	GTSAC	1 cut(s)	295
NspI	RCATGY	1 cut(s)	231
PaeR7I	CTCGAG	1 cut(s)	137
PceI	AGGCCT	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	302
PfoI	TCCNGGA	1 cut(s)	333
PkrI	GCNGC	1 cut(s)	59
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
Psp6I	CCWGG	1 cut(s)	333
PspGI	CCWGG	1 cut(s)	333
PspN4I	GGNNCC	1 cut(s)	270
PstI	CTGCAG	1 cut(s)	124
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
RseI	CAYNNNNRTG	1 cut(s)	263
SatI	GCNGC	1 cut(s)	58
ScaI	AGTACT	1 cut(s)	128
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	1 cut(s)	335
SetI	ASST	2 cut(s)	103, 192
SfcI	CTRYAG	1 cut(s)	120
Sfr274I	CTCGAG	1 cut(s)	137
SlaI	CTCGAG	1 cut(s)	137
SmiMI	CAYNNNNRTG	1 cut(s)	263
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	2 cut(s)	155, 279
SseBI	AGGCCT	1 cut(s)	42
StuI	AGGCCT	1 cut(s)	42
StyD4I	CCNGG	1 cut(s)	333
StyI	CCWWGG	2 cut(s)	144, 264
TaaI	ACNGT	1 cut(s)	253
TaiI	ACGT	1 cut(s)	103
TaqI	TCGA	1 cut(s)	138
TasI	AATT	2 cut(s)	155, 279
TatI	WGTACW	1 cut(s)	126
TfiI	GAWTC	1 cut(s)	302
TscAI	CASTG	4 cut(s)	17, 240, 256, 265
TseFI	GTSAC	1 cut(s)	295
TseI	GCWGC	1 cut(s)	57
Tsp45I	GTSAC	1 cut(s)	295
TspRI	CASTG	4 cut(s)	17, 240, 256, 265
XceI	RCATGY	1 cut(s)	231
XhoI	CTCGAG	1 cut(s)	137
ZrmI	AGTACT	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.