Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0018662

Physical Location & Seq

Genomic Coordinates Reverse (-)

53460416 .. 53461434

Gene Structure 1019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG343500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGACTTTTGCACCACCTAACTCACAGTTGGTGAAGGAGTTGAAACTTCGAACTAAAGAGGTGGACATGTGGTCGGTGGAACTCACAAGGATTCTGATTTATCTTGGAGAAAATGAGAACATGGAGGCCTCACTATCCAAAGCAGCCGTGCTTTCCCAGACTGCTCTGCTATGGCCACAAAACTACCTGACTGCAGAGTACTTTGCTCTCGAGTCCAAGGAAAGGCAATTTCCTAACCGACACAAGTTGCATGATACACAGCTCTATCATTGTGCTGTCTTCTCCGACAATGTTCTGGCATGTGAAGTGGTTGTGAACTCCACTCTTTTCACTGCCATGGAACCAGAGAAAATTGTTTTCCATGTGGTGACTGATTCACCCAATTTTCCAGCATTTTCCATCCTCCTGGAAAAAGCCACTATCCAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

143

Amino Acids

16.33

Weight (kDa)

5.33

Isoelectric Point (pI)

34.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018662)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000012126
rosa_multiflora	Rmu_co8382315.1_g000001 Rmu_sc0003735.1_g000006
rosa_roxburghii	Rroxscaffold_7G00176160
rosa_rugosa	Rorug06G0218600
rosa_samantha	Rh6AG330500 Rh6BG337300 Rh6CG343500 Rh6DG330800
rosa_wichuraiana	Rw6G028690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	173
AfaI	GTAC	1 cut(s)	200
AfiI	CCNNNNNNNGG	1 cut(s)	222
AflIII	ACRYGT	1 cut(s)	66
AgsI	TTSAA	1 cut(s)	43
AhdI	GACNNNNNGTC	1 cut(s)	70
AjnI	CCWGG	1 cut(s)	405
AluBI	AGCT	1 cut(s)	262
AluI	AGCT	1 cut(s)	262
Ama87I	CYCGRG	1 cut(s)	209
AoxI	GGCC	2 cut(s)	126, 173
ApeKI	GCWGC	1 cut(s)	143
AsuHPI	GGTGA	3 cut(s)	43, 369, 379
AsuII	TTCGAA	1 cut(s)	49
AvaI	CYCGRG	1 cut(s)	209
BalI	TGGCCA	1 cut(s)	175
BbsI	GAAGAC	1 cut(s)	271
BbvI	GCAGC	1 cut(s)	155
BccI	CCATC	1 cut(s)	407
BceAI	ACGGC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	407
BfmI	CTRYAG	1 cut(s)	192
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
BmcAI	AGTACT	1 cut(s)	200
Bme1390I	CCNGG	1 cut(s)	407
BmeRI	GACNNNNNGTC	1 cut(s)	70
BmeT110I	CYCGRG	1 cut(s)	209
BmiI	GGNNCC	1 cut(s)	342
BmrFI	CCNGG	1 cut(s)	407
BpiI	GAAGAC	1 cut(s)	271
Bpu14I	TTCGAA	1 cut(s)	49
BsaJI	CCNNGG	2 cut(s)	216, 336
Bsc4I	CCNNNNNNNGG	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	407
BseDI	CCNNGG	2 cut(s)	216, 336
BseGI	GGATG	1 cut(s)	399
BseLI	CCNNNNNNNGG	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	155
BshFI	GGCC	2 cut(s)	128, 175
BsiHKCI	CYCGRG	1 cut(s)	209
BslI	CCNNNNNNNGG	1 cut(s)	222
BsnI	GGCC	2 cut(s)	128, 175
BsoBI	CYCGRG	1 cut(s)	209
Bsp119I	TTCGAA	1 cut(s)	49
Bsp19I	CCATGG	1 cut(s)	336
BspANI	GGCC	2 cut(s)	128, 175
BspLI	GGNNCC	1 cut(s)	342
BspMAI	CTGCAG	1 cut(s)	196
BspT104I	TTCGAA	1 cut(s)	49
BssECI	CCNNGG	2 cut(s)	216, 336
BssT1I	CCWWGG	2 cut(s)	216, 336
Bst2UI	CCWGG	1 cut(s)	407
Bst4CI	ACNGT	1 cut(s)	27
BstBI	TTCGAA	1 cut(s)	49
BstDSI	CCRYGG	1 cut(s)	336
BstF5I	GGATG	1 cut(s)	399
BstNI	CCWGG	1 cut(s)	407
BstNSI	RCATGY	2 cut(s)	70, 303
BstSCI	CCNGG	1 cut(s)	405
BstSFI	CTRYAG	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	155
BstV2I	GAAGAC	1 cut(s)	271
BstXI	CCANNNNNNTGG	1 cut(s)	406
BsuRI	GGCC	2 cut(s)	128, 175
BtgI	CCRYGG	1 cut(s)	336
BtsCI	GGATG	1 cut(s)	399
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	1 cut(s)	330
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	6 cut(s)	67, 121, 251, 300, 337, 362
CviJI	RGCY	5 cut(s)	128, 146, 175, 262, 416
CviKI_1	RGCY	5 cut(s)	128, 146, 175, 262, 416
CviQI	GTAC	1 cut(s)	199
DriI	GACNNNNNGTC	1 cut(s)	70
EaeI	YGGCCR	1 cut(s)	173
Eam1105I	GACNNNNNGTC	1 cut(s)	70
Eco130I	CCWWGG	2 cut(s)	216, 336
Eco147I	AGGCCT	1 cut(s)	128
Eco88I	CYCGRG	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	405
EcoT14I	CCWWGG	2 cut(s)	216, 336
ErhI	CCWWGG	2 cut(s)	216, 336
FaeI	CATG	6 cut(s)	70, 124, 254, 303, 340, 365
FaiI	YATR	7 cut(s)	68, 122, 172, 252, 301, 338, 363
FatI	CATG	6 cut(s)	66, 120, 250, 299, 336, 361
Fnu4HI	GCNGC	1 cut(s)	144
FokI	GGATG	1 cut(s)	386
Fsp4HI	GCNGC	1 cut(s)	144
GluI	GCNGC	1 cut(s)	144
HaeIII	GGCC	2 cut(s)	128, 175
Hin1II	CATG	6 cut(s)	70, 124, 254, 303, 340, 365
HinfI	GANTC	3 cut(s)	91, 212, 374
HphI	GGTGA	3 cut(s)	43, 369, 379
Hpy166II	GTNNAC	2 cut(s)	64, 316
Hpy188I	TCNGA	2 cut(s)	96, 286
Hpy188III	TCNNGA	1 cut(s)	209
Hpy8I	GTNNAC	2 cut(s)	64, 316
HpyAV	CCTTC	1 cut(s)	28
HpyCH4III	ACNGT	1 cut(s)	27
HpyCH4V	TGCA	3 cut(s)	11, 194, 250
Hsp92II	CATG	6 cut(s)	70, 124, 254, 303, 340, 365
LpnPI	CCDG	7 cut(s)	170, 200, 281, 357, 392, 402, 419
Lsp1109I	GCAGC	1 cut(s)	155
MaeIII	GTNAC	1 cut(s)	367
MboII	GAAGA	1 cut(s)	271
MlsI	TGGCCA	1 cut(s)	175
MluCI	AATT	3 cut(s)	227, 351, 382
MluNI	TGGCCA	1 cut(s)	175
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	1 cut(s)	309
MnlI	CCTC	4 cut(s)	52, 118, 139, 413
Mox20I	TGGCCA	1 cut(s)	175
MscI	TGGCCA	1 cut(s)	175
MslI	CAYNNNNRTG	1 cut(s)	335
Msp20I	TGGCCA	1 cut(s)	175
MspR9I	CCNGG	1 cut(s)	407
MvaI	CCWGG	1 cut(s)	407
NcoI	CCATGG	1 cut(s)	336
NlaIII	CATG	6 cut(s)	70, 124, 254, 303, 340, 365
NlaIV	GGNNCC	1 cut(s)	342
NmuCI	GTSAC	1 cut(s)	367
NspI	RCATGY	2 cut(s)	70, 303
NspV	TTCGAA	1 cut(s)	49
PaeR7I	CTCGAG	1 cut(s)	209
PceI	AGGCCT	1 cut(s)	128
PciI	ACATGT	1 cut(s)	66
PfeI	GAWTC	2 cut(s)	91, 374
PfoI	TCCNGGA	1 cut(s)	405
PkrI	GCNGC	1 cut(s)	145
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
PscI	ACATGT	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	405
PspGI	CCWGG	1 cut(s)	405
PspN4I	GGNNCC	1 cut(s)	342
PstI	CTGCAG	1 cut(s)	196
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
RseI	CAYNNNNRTG	1 cut(s)	335
SatI	GCNGC	1 cut(s)	144
ScaI	AGTACT	1 cut(s)	200
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	1 cut(s)	407
SetI	ASST	4 cut(s)	19, 63, 189, 264
SfcI	CTRYAG	1 cut(s)	192
Sfr274I	CTCGAG	1 cut(s)	209
SfuI	TTCGAA	1 cut(s)	49
SlaI	CTCGAG	1 cut(s)	209
SmiMI	CAYNNNNRTG	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	3 cut(s)	227, 351, 382
SseBI	AGGCCT	1 cut(s)	128
StuI	AGGCCT	1 cut(s)	128
StyD4I	CCNGG	1 cut(s)	405
StyI	CCWWGG	2 cut(s)	216, 336
TaaI	ACNGT	1 cut(s)	27
TaqI	TCGA	2 cut(s)	49, 210
TasI	AATT	3 cut(s)	227, 351, 382
TatI	WGTACW	1 cut(s)	198
TfiI	GAWTC	2 cut(s)	91, 374
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	1 cut(s)	367
TspRI	CASTG	1 cut(s)	337
XceI	RCATGY	2 cut(s)	70, 303
XhoI	CTCGAG	1 cut(s)	209
ZrmI	AGTACT	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.