Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0018662

Physical Location & Seq

Genomic Coordinates Reverse (-)

52752191 .. 52755655

Gene Structure 3465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G028690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGAAGCCCTTGGGGAGTAGGGAAGCTGAGGCACAAGAGGCTTGCCAATTTGATTTGATATTGCTGCAACGGCGACGAGAGGCTGCTGGTGGCCGAGAAGCAGGTGAAGGTAAAAATGATAGTCTTCCATTCGGAAAAGGCTTTTGTTCAGCATTTAAGTGCTTTGCAGAAAATGAGAAACATGGAGGCCTCACTATCCAAAGCAGCCGTGCTTTCCCAGACTGCTCTGCTATGGCCACAAAACTACGTTCTATGACCACACTGACTGCAGAGTACTTTGCTCTCGAGTCCAAGGAAAGGCAATTTCCTAACCGACACAAGTTGCATGATACACAGCTCTATCATTGTGCTGTCTTCTCCGACAATGTTCTGGCATGTGCAGTGGTTGTGAACTCCACTGTTTCCACTGCCATGGAACCAGAGAAAATTGTTTTCCATGTGGTAAATGATTCACCCAATTTTCCAGCATTGTCCATCCTCCTGGAAAAAGCCACCATCCAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

168

Amino Acids

18.51

Weight (kDa)

6.52

Isoelectric Point (pI)

49.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018662)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000012126
rosa_multiflora	Rmu_co8382315.1_g000001 Rmu_sc0003735.1_g000006
rosa_roxburghii	Rroxscaffold_7G00176160
rosa_rugosa	Rorug06G0218600
rosa_samantha	Rh6AG330500 Rh6BG337300 Rh6CG343500 Rh6DG330800
rosa_wichuraiana	Rw6G028690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	92
Acc36I	ACCTGC	1 cut(s)	92
AcoI	YGGCCR	2 cut(s)	91, 234
AfaI	GTAC	1 cut(s)	275
AfiI	CCNNNNNNNGG	1 cut(s)	297
AjnI	CCWGG	1 cut(s)	480
AluBI	AGCT	2 cut(s)	26, 337
AluI	AGCT	2 cut(s)	26, 337
Ama87I	CYCGRG	1 cut(s)	284
AoxI	GGCC	3 cut(s)	91, 187, 234
ApeKI	GCWGC	3 cut(s)	64, 83, 204
AsuHPI	GGTGA	2 cut(s)	116, 444
AvaI	CYCGRG	1 cut(s)	284
BalI	TGGCCA	1 cut(s)	236
BbsI	GAAGAC	2 cut(s)	116, 346
BbvCI	CCTCAGC	1 cut(s)	27
BbvI	GCAGC	3 cut(s)	51, 70, 216
BccI	CCATC	2 cut(s)	482, 503
BceAI	ACGGC	2 cut(s)	86, 192
BciT130I	CCWGG	1 cut(s)	482
BfmI	CTRYAG	1 cut(s)	267
BfuAI	ACCTGC	1 cut(s)	92
BisI	GCNGC	3 cut(s)	65, 84, 205
BlsI	GCNGC	3 cut(s)	66, 85, 206
BmcAI	AGTACT	1 cut(s)	275
Bme1390I	CCNGG	1 cut(s)	482
BmeT110I	CYCGRG	1 cut(s)	284
BmiI	GGNNCC	1 cut(s)	417
BmrFI	CCNGG	1 cut(s)	482
BpiI	GAAGAC	2 cut(s)	116, 346
Bpu10I	CCTNAGC	1 cut(s)	27
BsaJI	CCNNGG	3 cut(s)	9, 291, 411
Bsc4I	CCNNNNNNNGG	1 cut(s)	297
BseBI	CCWGG	1 cut(s)	482
BseDI	CCNNGG	3 cut(s)	9, 291, 411
BseGI	GGATG	2 cut(s)	474, 495
BseLI	CCNNNNNNNGG	1 cut(s)	297
BseMII	CTCAG	1 cut(s)	18
BseXI	GCAGC	3 cut(s)	51, 70, 216
BsgI	GTGCAG	1 cut(s)	399
BshFI	GGCC	3 cut(s)	93, 189, 236
BsiHKCI	CYCGRG	1 cut(s)	284
BslI	CCNNNNNNNGG	1 cut(s)	297
BsnI	GGCC	3 cut(s)	93, 189, 236
BsoBI	CYCGRG	1 cut(s)	284
Bsp19I	CCATGG	1 cut(s)	411
BspANI	GGCC	3 cut(s)	93, 189, 236
BspCNI	CTCAG	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	417
BspMAI	CTGCAG	1 cut(s)	271
BspMI	ACCTGC	1 cut(s)	92
BssECI	CCNNGG	3 cut(s)	9, 291, 411
BssT1I	CCWWGG	3 cut(s)	9, 291, 411
Bst2UI	CCWGG	1 cut(s)	482
Bst4CI	ACNGT	1 cut(s)	400
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	1 cut(s)	27
BstDSI	CCRYGG	1 cut(s)	411
BstF5I	GGATG	2 cut(s)	474, 495
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 70
BstNI	CCWGG	1 cut(s)	482
BstNSI	RCATGY	1 cut(s)	378
BstSCI	CCNGG	1 cut(s)	480
BstSFI	CTRYAG	1 cut(s)	267
BstV1I	GCAGC	3 cut(s)	51, 70, 216
BstV2I	GAAGAC	2 cut(s)	116, 346
BstXI	CCANNNNNNTGG	2 cut(s)	412, 481
BsuRI	GGCC	3 cut(s)	93, 189, 236
BtgI	CCRYGG	1 cut(s)	411
BtsCI	GGATG	2 cut(s)	474, 495
BtsI	GCAGTG	2 cut(s)	387, 405
BtsIMutI	CAGTG	4 cut(s)	260, 387, 396, 405
BveI	ACCTGC	1 cut(s)	92
Cac8I	GCNNGC	1 cut(s)	43
Csp6I	GTAC	1 cut(s)	274
CviAII	CATG	5 cut(s)	182, 326, 375, 412, 437
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	1 cut(s)	27
EaeI	YGGCCR	2 cut(s)	91, 234
Eco130I	CCWWGG	3 cut(s)	9, 291, 411
Eco147I	AGGCCT	1 cut(s)	189
Eco88I	CYCGRG	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	480
EcoT14I	CCWWGG	3 cut(s)	9, 291, 411
ErhI	CCWWGG	3 cut(s)	9, 291, 411
FaeI	CATG	5 cut(s)	185, 329, 378, 415, 440
FaiI	YATR	7 cut(s)	183, 233, 254, 327, 376, 413, 438
FatI	CATG	5 cut(s)	181, 325, 374, 411, 436
Fnu4HI	GCNGC	3 cut(s)	65, 84, 205
FokI	GGATG	2 cut(s)	461, 482
Fsp4HI	GCNGC	3 cut(s)	65, 84, 205
GluI	GCNGC	3 cut(s)	65, 84, 205
HaeIII	GGCC	3 cut(s)	93, 189, 236
Hin1II	CATG	5 cut(s)	185, 329, 378, 415, 440
HinfI	GANTC	2 cut(s)	287, 449
HphI	GGTGA	2 cut(s)	116, 444
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	2 cut(s)	134, 361
Hpy188III	TCNNGA	1 cut(s)	284
Hpy8I	GTNNAC	1 cut(s)	391
Hpy99I	CGWCG	1 cut(s)	78
HpyAV	CCTTC	1 cut(s)	101
HpyCH4III	ACNGT	1 cut(s)	400
HpyCH4IV	ACGT	1 cut(s)	247
HpyCH4V	TGCA	5 cut(s)	67, 167, 269, 325, 380
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 70
HpyF3I	CTNAG	1 cut(s)	27
HpySE526I	ACGT	1 cut(s)	247
Hsp92II	CATG	5 cut(s)	185, 329, 378, 415, 440
LpnPI	CCDG	8 cut(s)	72, 87, 231, 356, 432, 467, 477, 494
Lsp1109I	GCAGC	3 cut(s)	51, 70, 216
MaeII	ACGT	1 cut(s)	247
MboII	GAAGA	2 cut(s)	116, 346
MlsI	TGGCCA	1 cut(s)	236
MluCI	AATT	4 cut(s)	47, 302, 426, 457
MluNI	TGGCCA	1 cut(s)	236
MlyI	GAGTC	1 cut(s)	296
MmeI	TCCRAC	1 cut(s)	384
MnlI	CCTC	6 cut(s)	22, 31, 73, 179, 200, 488
Mox20I	TGGCCA	1 cut(s)	236
MscI	TGGCCA	1 cut(s)	236
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	2 cut(s)	157, 410
Msp20I	TGGCCA	1 cut(s)	236
MspR9I	CCNGG	1 cut(s)	482
MvaI	CCWGG	1 cut(s)	482
MwoI	GCNNNNNNNGC	2 cut(s)	38, 70
NcoI	CCATGG	1 cut(s)	411
NlaIII	CATG	5 cut(s)	185, 329, 378, 415, 440
NlaIV	GGNNCC	1 cut(s)	417
NmeAIII	GCCGAG	1 cut(s)	119
NspI	RCATGY	1 cut(s)	378
PaeR7I	CTCGAG	1 cut(s)	284
PaqCI	CACCTGC	1 cut(s)	92
PceI	AGGCCT	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	449
PfoI	TCCNGGA	1 cut(s)	480
PkrI	GCNGC	3 cut(s)	66, 85, 206
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
Psp6I	CCWGG	1 cut(s)	480
PspGI	CCWGG	1 cut(s)	480
PspN4I	GGNNCC	1 cut(s)	417
PstI	CTGCAG	1 cut(s)	271
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
RseI	CAYNNNNRTG	2 cut(s)	157, 410
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	3 cut(s)	65, 84, 205
ScaI	AGTACT	1 cut(s)	275
SchI	GAGTC	1 cut(s)	296
ScrFI	CCNGG	1 cut(s)	482
SetI	ASST	5 cut(s)	28, 106, 112, 250, 339
SfcI	CTRYAG	1 cut(s)	267
Sfr274I	CTCGAG	1 cut(s)	284
SlaI	CTCGAG	1 cut(s)	284
SmiMI	CAYNNNNRTG	2 cut(s)	157, 410
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	4 cut(s)	47, 302, 426, 457
SseBI	AGGCCT	1 cut(s)	189
StuI	AGGCCT	1 cut(s)	189
StyD4I	CCNGG	1 cut(s)	480
StyI	CCWWGG	3 cut(s)	9, 291, 411
TaaI	ACNGT	1 cut(s)	400
TaiI	ACGT	1 cut(s)	250
TaqI	TCGA	1 cut(s)	285
TasI	AATT	4 cut(s)	47, 302, 426, 457
TatI	WGTACW	1 cut(s)	273
TfiI	GAWTC	1 cut(s)	449
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	4 cut(s)	267, 387, 403, 412
TseI	GCWGC	3 cut(s)	64, 83, 204
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	4 cut(s)	267, 387, 403, 412
XceI	RCATGY	1 cut(s)	378
XhoI	CTCGAG	1 cut(s)	284
ZrmI	AGTACT	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.