Rh6DG330800

Belongs to the glycosyltransferase 8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0018662
Physical Location & Seq
Reverse (-)
53486664 .. 53491650
4987 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG330800.1

Sequence Viewer

Length: 579 bp
ATGCCATGCCATGCCAGTTGGTGCTTGGAGGTTGCATATATTCAAGAAGTTGGGAAGGCCAGGTTTTTGGATACTCTTAGAGGCAGAGATATTGCTGCGACGGCGACGAGAGGCTGCTGGTGGCCGAGTACATACCCAAGGATACCCTTGCTAAATATCTCTTCCACTGAAGCAGGTGAAGGTAAAAATGATAGTCTTCCATTCGGAAAAGGCTTTTGTTCAGCATTTAAGTGCTTTGCAGAAAATGAGAAACATGGAGGCCTCACTATCCAAAGCAGCTGTGCTTTCCCAGACTGCTCTGCTATGGCCACAAAACTACGTTCTATGACCACACTGACTGCAGAGTACTTTGCTCTCGAGTCCAAGGAAAGGCAATTTCCTAACCGACACAAGTTGCATGATACACGGCTCTATCATTGTGCTGTCTTCTCCGACAATGTTCTGGCATGTGCAGTGGTTGTGAACTCCACTGTTTCCACTGCCATGGAACCAGAGAAAATTGTTTTCCATGTGGTGACTGATTCACCCAATTTTCCAGCATTGTCTATCCTCCTGGAAAAAGCCACTATCCAGGTTTAG

Protein Analysis

192

Amino Acids

21.2

Weight (kDa)

6.98

Isoelectric Point (pI)

42.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018662)

Species Orthologous Gene IDs
rosa_laevigata RLG00000012126
rosa_multiflora Rmu_co8382315.1_g000001 Rmu_sc0003735.1_g000006
rosa_roxburghii Rroxscaffold_7G00176160
rosa_rugosa Rorug06G0218600
rosa_samantha Rh6AG330500 Rh6BG337300 Rh6CG343500 Rh6DG330800
rosa_wichuraiana Rw6G028690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 164
Acc36I ACCTGC 1 cut(s) 164
AcoI YGGCCR 2 cut(s) 122, 306
AcuI CTGAAG 1 cut(s) 189
AfaI GTAC 2 cut(s) 130, 347
AfiI CCNNNNNNNGG 1 cut(s) 369
AgsI TTSAA 1 cut(s) 44
AjnI CCWGG 3 cut(s) 59, 552, 570
AluBI AGCT 1 cut(s) 279
AluI AGCT 1 cut(s) 279
Ama87I CYCGRG 1 cut(s) 356
AoxI GGCC 4 cut(s) 57, 122, 259, 306
ApeKI GCWGC 3 cut(s) 95, 114, 276
AsuHPI GGTGA 3 cut(s) 188, 516, 526
AvaI CYCGRG 1 cut(s) 356
BalI TGGCCA 1 cut(s) 308
BbsI GAAGAC 2 cut(s) 188, 418
BbvI GCAGC 3 cut(s) 82, 101, 288
BceAI ACGGC 2 cut(s) 117, 422
BciT130I CCWGG 3 cut(s) 61, 554, 572
BciVI GTATCC 2 cut(s) 64, 135
BfmI CTRYAG 1 cut(s) 339
BfuAI ACCTGC 1 cut(s) 164
BfuI GTATCC 2 cut(s) 64, 135
BisI GCNGC 3 cut(s) 96, 115, 277
BlsI GCNGC 3 cut(s) 97, 116, 278
BmcAI AGTACT 1 cut(s) 347
Bme1390I CCNGG 3 cut(s) 61, 554, 572
BmeT110I CYCGRG 1 cut(s) 356
BmiI GGNNCC 1 cut(s) 489
BmrFI CCNGG 3 cut(s) 61, 554, 572
BpiI GAAGAC 2 cut(s) 188, 418
BsaJI CCNNGG 3 cut(s) 137, 363, 483
Bsc4I CCNNNNNNNGG 1 cut(s) 369
Bse1I ACTGG 1 cut(s) 15
BseBI CCWGG 3 cut(s) 61, 554, 572
BseDI CCNNGG 3 cut(s) 137, 363, 483
BseLI CCNNNNNNNGG 1 cut(s) 369
BseNI ACTGG 1 cut(s) 15
BseXI GCAGC 3 cut(s) 82, 101, 288
BsgI GTGCAG 1 cut(s) 471
BshFI GGCC 4 cut(s) 59, 124, 261, 308
BsiHKCI CYCGRG 1 cut(s) 356
BslI CCNNNNNNNGG 1 cut(s) 369
BsnI GGCC 4 cut(s) 59, 124, 261, 308
BsoBI CYCGRG 1 cut(s) 356
Bsp19I CCATGG 1 cut(s) 483
BspANI GGCC 4 cut(s) 59, 124, 261, 308
BspLI GGNNCC 1 cut(s) 489
BspMAI CTGCAG 1 cut(s) 343
BspMI ACCTGC 1 cut(s) 164
BsrI ACTGG 1 cut(s) 15
BssECI CCNNGG 3 cut(s) 137, 363, 483
BssT1I CCWWGG 3 cut(s) 137, 363, 483
Bst2UI CCWGG 3 cut(s) 61, 554, 572
Bst4CI ACNGT 1 cut(s) 472
Bst6I CTCTTC 1 cut(s) 166
BstDEI CTNAG 1 cut(s) 77
BstDSI CCRYGG 1 cut(s) 483
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstNI CCWGG 3 cut(s) 61, 554, 572
BstNSI RCATGY 1 cut(s) 450
BstSCI CCNGG 3 cut(s) 59, 552, 570
BstSFI CTRYAG 1 cut(s) 339
BstV1I GCAGC 3 cut(s) 82, 101, 288
BstV2I GAAGAC 2 cut(s) 188, 418
BstXI CCANNNNNNTGG 2 cut(s) 67, 484
BsuI GTATCC 2 cut(s) 64, 135
BsuRI GGCC 4 cut(s) 59, 124, 261, 308
BtgI CCRYGG 1 cut(s) 483
BtsI GCAGTG 2 cut(s) 459, 477
BtsIMutI CAGTG 5 cut(s) 165, 332, 459, 468, 477
BveI ACCTGC 1 cut(s) 164
Csp6I GTAC 2 cut(s) 129, 346
CviAII CATG 7 cut(s) 6, 11, 254, 398, 447, 484, 509
CviJI RGCY 9 cut(s) 59, 114, 124, 213, 261, 279, 308, 409, 563
CviKI_1 RGCY 9 cut(s) 59, 114, 124, 213, 261, 279, 308, 409, 563
CviQI GTAC 2 cut(s) 129, 346
DdeI CTNAG 1 cut(s) 77
EaeI YGGCCR 2 cut(s) 122, 306
Eam1104I CTCTTC 1 cut(s) 166
EarI CTCTTC 1 cut(s) 166
Eco130I CCWWGG 3 cut(s) 137, 363, 483
Eco147I AGGCCT 1 cut(s) 261
Eco57I CTGAAG 1 cut(s) 189
Eco88I CYCGRG 1 cut(s) 356
EcoRII CCWGG 3 cut(s) 59, 552, 570
EcoT14I CCWWGG 3 cut(s) 137, 363, 483
ErhI CCWWGG 3 cut(s) 137, 363, 483
FaeI CATG 7 cut(s) 9, 14, 257, 401, 450, 487, 512
FatI CATG 7 cut(s) 5, 10, 253, 397, 446, 483, 508
Fnu4HI GCNGC 3 cut(s) 96, 115, 277
Fsp4HI GCNGC 3 cut(s) 96, 115, 277
GluI GCNGC 3 cut(s) 96, 115, 277
HaeIII GGCC 4 cut(s) 59, 124, 261, 308
Hin1II CATG 7 cut(s) 9, 14, 257, 401, 450, 487, 512
HinfI GANTC 2 cut(s) 359, 521
HphI GGTGA 3 cut(s) 188, 516, 526
Hpy166II GTNNAC 1 cut(s) 463
Hpy188I TCNGA 2 cut(s) 206, 433
Hpy188III TCNNGA 2 cut(s) 44, 356
Hpy8I GTNNAC 1 cut(s) 463
Hpy99I CGWCG 2 cut(s) 103, 109
HpyAV CCTTC 2 cut(s) 49, 173
HpyCH4III ACNGT 1 cut(s) 472
HpyCH4IV ACGT 1 cut(s) 319
HpyCH4V TGCA 5 cut(s) 35, 239, 341, 397, 452
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 1 cut(s) 77
HpySE526I ACGT 1 cut(s) 319
Hsp92II CATG 7 cut(s) 9, 14, 257, 401, 450, 487, 512
Lsp1109I GCAGC 3 cut(s) 82, 101, 288
MaeII ACGT 1 cut(s) 319
MaeIII GTNAC 1 cut(s) 514
MboII GAAGA 3 cut(s) 153, 188, 418
MlsI TGGCCA 1 cut(s) 308
MluCI AATT 3 cut(s) 374, 498, 529
MluNI TGGCCA 1 cut(s) 308
MlyI GAGTC 1 cut(s) 368
MmeI TCCRAC 1 cut(s) 456
MnlI CCTC 6 cut(s) 22, 74, 104, 251, 272, 560
Mox20I TGGCCA 1 cut(s) 308
MscI TGGCCA 1 cut(s) 308
MseI TTAA 1 cut(s) 228
MslI CAYNNNNRTG 2 cut(s) 229, 482
Msp20I TGGCCA 1 cut(s) 308
MspA1I CMGCKG 1 cut(s) 279
MspR9I CCNGG 3 cut(s) 61, 554, 572
MvaI CCWGG 3 cut(s) 61, 554, 572
MwoI GCNNNNNNNGC 1 cut(s) 101
NcoI CCATGG 1 cut(s) 483
NlaIII CATG 7 cut(s) 9, 14, 257, 401, 450, 487, 512
NlaIV GGNNCC 1 cut(s) 489
NmeAIII GCCGAG 1 cut(s) 150
NmuCI GTSAC 1 cut(s) 514
NspI RCATGY 1 cut(s) 450
PaeR7I CTCGAG 1 cut(s) 356
PaqCI CACCTGC 1 cut(s) 164
PceI AGGCCT 1 cut(s) 261
PfeI GAWTC 1 cut(s) 521
PfoI TCCNGGA 1 cut(s) 552
PkrI GCNGC 3 cut(s) 97, 116, 278
PleI GAGTC 1 cut(s) 367
PpsI GAGTC 1 cut(s) 367
Psp6I CCWGG 3 cut(s) 59, 552, 570
PspGI CCWGG 3 cut(s) 59, 552, 570
PspN4I GGNNCC 1 cut(s) 489
PstI CTGCAG 1 cut(s) 343
PvuII CAGCTG 1 cut(s) 279
RsaI GTAC 2 cut(s) 130, 347
RsaNI GTAC 2 cut(s) 129, 346
RseI CAYNNNNRTG 2 cut(s) 229, 482
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 3 cut(s) 96, 115, 277
ScaI AGTACT 1 cut(s) 347
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 3 cut(s) 61, 554, 572
SetI ASST 7 cut(s) 33, 65, 178, 184, 281, 322, 576
SfcI CTRYAG 1 cut(s) 339
Sfr274I CTCGAG 1 cut(s) 356
SlaI CTCGAG 1 cut(s) 356
SmiMI CAYNNNNRTG 2 cut(s) 229, 482
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 3 cut(s) 374, 498, 529
SseBI AGGCCT 1 cut(s) 261
StuI AGGCCT 1 cut(s) 261
StyD4I CCNGG 3 cut(s) 59, 552, 570
StyI CCWWGG 3 cut(s) 137, 363, 483
TaaI ACNGT 1 cut(s) 472
TaiI ACGT 1 cut(s) 322
TaqI TCGA 1 cut(s) 357
TasI AATT 3 cut(s) 374, 498, 529
TatI WGTACW 2 cut(s) 128, 345
TfiI GAWTC 1 cut(s) 521
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TscAI CASTG 5 cut(s) 172, 339, 459, 475, 484
TseFI GTSAC 1 cut(s) 514
TseI GCWGC 3 cut(s) 95, 114, 276
Tsp45I GTSAC 1 cut(s) 514
TspRI CASTG 5 cut(s) 172, 339, 459, 475, 484
XceI RCATGY 1 cut(s) 450
XcmI CCANNNNNNNNNTGG 1 cut(s) 22
XhoI CTCGAG 1 cut(s) 356
ZrmI AGTACT 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.