Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0018662

Physical Location & Seq

Genomic Coordinates Forward (+)

15654785 .. 15662013

Gene Structure 7229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00176160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGGGATGATCGACGAAGAGGAGGAGATCACGAAAATGGGGAGGATCGGTCTTGGGGATGCCGGAAAAGGTGTTTTCCGGCCGGTCGGGTCGGCGGAGGCCGGGGAGCCTTCGATCCAACGTACGGGGCAGCGGCGGTGCAAAGGAGGACCACAGGGAGCATGGGCGGCGCACGGCGAATCGAGGAGGGCGGGTCCGGGGCGGAGGTGGCGGAGGCCGTCCAAAATACCGGAAAAGAGTACTGTATGTGGGGTTAAGCACCTATCTGGGTTGTTGATTAGTACTTCAGCTCTAGAGGAACTTCCTGACCTGGACACCCTTTTTGGTGCTTGGAGGTTGCATATATTCAAGAAGTTGGGAAGGCCAGGTTTTTGGATACTCTTAGAGGCAGAGGTTTGGACTGGAATCAAAGAGAAGGCTTGCTTGGGGAGTAGGGAAGCTGAGGCACAAGAGGCTTGCCAATTGATTAGATATTGCTGCGACGGCGACGAGAGGCTTCTGGTGGCCGAGTACATACCCAAGGATACCCTTGCTAAATATCTCTTCCACTCGGGTGAAGGTTTGAAAGAGCCCAGGAAAGTTTTGTATGAAGATAAGGATGTAGTTTCTGGGGTTAGTTACAGTTTCTGTGAGAATGAAGATGATAAGGAATCTGGAAATGTGGGAAACACTACTGATATAGTGGAAAGAACTGAAAATGAAAATGAGAAACATGGAGACCTCACTATCCAAAGCCAGCCGTGCTTTCCCAGACTGCTCTGCCATGGCCACAAAACTGCGTTCTATGACGACAGTGCTGAAGAGCAAGTTGTGTTGCAGAAGAAGCAAGTCACATTTCTTTATCACCTTGCTGGAAGTACTACCCCGAAAGGTCTTCATTGTCTTTCTTTGCAGCTGACTGCAGAGTACTTTGCTCTGGAGTCCAAGGAAAGGCAATTCCCTAACCGACACAAGTTGCATGATCCACAGCTCTATCATTGTGCTGTCTTCTCCGACAATGTTCTGGCATGTGCAGTGGTTGTGAACTCCACTGTTTCCACTGCCATGGAACCAGAGAAAATTGTTTTCCATGTGGTGACTGATTCACTCAATTTTCCAGCATTGTCTATCCTCCTGGAAAAAGCCACTATCGAAGTCCAAAGCATGGAGAGTTTTGTGACAAGCGTAGAGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

391

Amino Acids

43.47

Weight (kDa)

5.7

Isoelectric Point (pI)

46.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018662)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000012126
rosa_multiflora	Rmu_co8382315.1_g000001 Rmu_sc0003735.1_g000006
rosa_roxburghii	Rroxscaffold_7G00176160
rosa_rugosa	Rorug06G0218600
rosa_samantha	Rh6AG330500 Rh6BG337300 Rh6CG343500 Rh6DG330800
rosa_wichuraiana	Rw6G028690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1144
AciI	CCGC	7 cut(s)	95, 133, 136, 167, 191, 202, 211
AclWI	GGATC	3 cut(s)	53, 109, 956
AcoI	YGGCCR	3 cut(s)	80, 504, 766
AcuI	CTGAAG	2 cut(s)	270, 819
AfaI	GTAC	6 cut(s)	124, 241, 283, 512, 859, 908
AfiI	CCNNNNNNNGG	3 cut(s)	124, 930, 1144
AgsI	TTSAA	2 cut(s)	349, 565
AjnI	CCWGG	4 cut(s)	309, 364, 572, 1113
AjuI	GAANNNNNNNTTGG	2 cut(s)	407, 439
AleI	CACNNNNGTG	1 cut(s)	552
AluBI	AGCT	4 cut(s)	290, 440, 895, 970
AluI	AGCT	4 cut(s)	290, 440, 895, 970
Alw26I	GTCTC	1 cut(s)	711
AlwI	GGATC	3 cut(s)	53, 109, 956
AlwNI	CAGNNNCTG	1 cut(s)	627
Ama87I	CYCGRG	1 cut(s)	550
AoxI	GGCC	6 cut(s)	80, 99, 215, 362, 504, 766
ApeKI	GCWGC	3 cut(s)	130, 477, 892
ArsI	GACNNNNNNTTYG	2 cut(s)	305, 337
AspLEI	GCGC	1 cut(s)	172
AspS9I	GGNCC	2 cut(s)	149, 194
AsuC2I	CCSGG	2 cut(s)	103, 198
AsuHPI	GGTGA	3 cut(s)	566, 836, 1087
AvaI	CYCGRG	1 cut(s)	550
AvaII	GGWCC	2 cut(s)	149, 194
BalI	TGGCCA	1 cut(s)	768
BanII	GRGCYC	1 cut(s)	573
BbsI	GAAGAC	2 cut(s)	866, 979
BbvCI	CCTCAGC	1 cut(s)	441
BbvI	GCAGC	3 cut(s)	142, 464, 904
BceAI	ACGGC	4 cut(s)	190, 202, 499, 724
BciT130I	CCWGG	4 cut(s)	311, 366, 574, 1115
BciVI	GTATCC	2 cut(s)	369, 517
BcnI	CCSGG	2 cut(s)	103, 198
BcoDI	GTCTC	1 cut(s)	711
BfaI	CTAG	1 cut(s)	293
BfmI	CTRYAG	1 cut(s)	900
BfuI	GTATCC	2 cut(s)	369, 517
BisI	GCNGC	5 cut(s)	131, 134, 168, 478, 893
BlsI	GCNGC	5 cut(s)	132, 135, 169, 479, 894
BmcAI	AGTACT	4 cut(s)	241, 283, 859, 908
Bme1390I	CCNGG	6 cut(s)	103, 198, 311, 366, 574, 1115
Bme18I	GGWCC	2 cut(s)	149, 194
BmeT110I	CYCGRG	1 cut(s)	550
BmgT120I	GGNCC	2 cut(s)	149, 194
BmiI	GGNNCC	3 cut(s)	108, 195, 1050
BmrFI	CCNGG	6 cut(s)	103, 198, 311, 366, 574, 1115
BmsI	GCATC	1 cut(s)	49
BpiI	GAAGAC	2 cut(s)	866, 979
BpmI	CTGGAG	1 cut(s)	938
Bpu10I	CCTNAGC	1 cut(s)	441
BpuMI	CCSGG	2 cut(s)	103, 198
BsaI	GGTCTC	1 cut(s)	711
BsaJI	CCNNGG	7 cut(s)	102, 197, 519, 572, 763, 924, 1044
BsaWI	WCCGGW	1 cut(s)	229
BsaXI	ACNNNNNCTCC	4 cut(s)	34, 64, 178, 208
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 930, 1144
Bse118I	RCCGGY	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	406
BseBI	CCWGG	4 cut(s)	311, 366, 574, 1115
BseDI	CCNNGG	7 cut(s)	102, 197, 519, 572, 763, 924, 1044
BseGI	GGATG	3 cut(s)	12, 64, 604
BseLI	CCNNNNNNNGG	3 cut(s)	124, 930, 1144
BseMII	CTCAG	1 cut(s)	432
BseNI	ACTGG	1 cut(s)	406
BseRI	GAGGAG	3 cut(s)	35, 38, 199
BseX3I	CGGCCG	1 cut(s)	80
BseXI	GCAGC	3 cut(s)	142, 464, 904
BsgI	GTGCAG	1 cut(s)	1032
Bsh1285I	CGRYCG	2 cut(s)	83, 87
BshFI	GGCC	6 cut(s)	82, 101, 217, 364, 506, 768
BsiEI	CGRYCG	2 cut(s)	83, 87
BsiHKCI	CYCGRG	1 cut(s)	550
BsiSI	CCGG	6 cut(s)	63, 79, 83, 102, 197, 230
BsiWI	CGTACG	1 cut(s)	122
BslI	CCNNNNNNNGG	3 cut(s)	124, 930, 1144
BsmAI	GTCTC	1 cut(s)	711
BsnI	GGCC	6 cut(s)	82, 101, 217, 364, 506, 768
Bso31I	GGTCTC	1 cut(s)	711
BsoBI	CYCGRG	1 cut(s)	550
Bsp1286I	GDGCHC	1 cut(s)	573
Bsp143I	GATC	5 cut(s)	9, 27, 45, 114, 961
Bsp19I	CCATGG	2 cut(s)	763, 1044
BspACI	CCGC	7 cut(s)	95, 133, 136, 167, 191, 202, 211
BspANI	GGCC	6 cut(s)	82, 101, 217, 364, 506, 768
BspCNI	CTCAG	1 cut(s)	433
BspLI	GGNNCC	3 cut(s)	108, 195, 1050
BspMAI	CTGCAG	1 cut(s)	904
BspPI	GGATC	3 cut(s)	53, 109, 956
BspQI	GCTCTTC	1 cut(s)	795
BspTNI	GGTCTC	1 cut(s)	711
BsrFI	RCCGGY	1 cut(s)	82
BsrI	ACTGG	1 cut(s)	406
BssAI	RCCGGY	1 cut(s)	82
BssECI	CCNNGG	7 cut(s)	102, 197, 519, 572, 763, 924, 1044
BssMI	GATC	5 cut(s)	9, 27, 45, 114, 961
BssT1I	CCWWGG	4 cut(s)	519, 763, 924, 1044
Bst2UI	CCWGG	4 cut(s)	311, 366, 574, 1115
Bst4CI	ACNGT	4 cut(s)	244, 623, 794, 1033
Bst6I	CTCTTC	3 cut(s)	12, 548, 795
BstC8I	GCNNGC	3 cut(s)	421, 457, 737
BstDEI	CTNAG	2 cut(s)	382, 441
BstDSI	CCRYGG	2 cut(s)	763, 1044
BstF5I	GGATG	3 cut(s)	12, 64, 604
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	5 cut(s)	12, 30, 48, 117, 964
BstMAI	GTCTC	1 cut(s)	711
BstMBI	GATC	5 cut(s)	9, 27, 45, 114, 961
BstMCI	CGRYCG	2 cut(s)	83, 87
BstMWI	GCNNNNNNNGC	7 cut(s)	167, 208, 452, 483, 741, 823, 1170
BstNI	CCWGG	4 cut(s)	311, 366, 574, 1115
BstNSI	RCATGY	1 cut(s)	1011
BstSCI	CCNGG	6 cut(s)	101, 196, 309, 364, 572, 1113
BstSFI	CTRYAG	1 cut(s)	900
BstV1I	GCAGC	3 cut(s)	142, 464, 904
BstV2I	GAAGAC	2 cut(s)	866, 979
BstXI	CCANNNNNNTGG	2 cut(s)	372, 1045
BstZI	CGGCCG	1 cut(s)	80
BsuI	GTATCC	2 cut(s)	369, 517
BsuRI	GGCC	6 cut(s)	82, 101, 217, 364, 506, 768
BtgI	CCRYGG	2 cut(s)	763, 1044
BtsCI	GGATG	3 cut(s)	12, 64, 604
BtsI	GCAGTG	2 cut(s)	1020, 1038
BtsIMutI	CAGTG	4 cut(s)	799, 1020, 1029, 1038
Cac8I	GCNNGC	3 cut(s)	421, 457, 737
CaiI	CAGNNNCTG	1 cut(s)	627
CfoI	GCGC	1 cut(s)	172
Cfr10I	RCCGGY	1 cut(s)	82
Cfr13I	GGNCC	2 cut(s)	149, 194
Csp6I	GTAC	6 cut(s)	123, 240, 282, 511, 858, 907
CviAII	CATG	8 cut(s)	162, 713, 764, 959, 1008, 1045, 1070, 1144
CviQI	GTAC	6 cut(s)	123, 240, 282, 511, 858, 907
DdeI	CTNAG	2 cut(s)	382, 441
DpnI	GATC	5 cut(s)	11, 29, 47, 116, 963
DpnII	GATC	5 cut(s)	9, 27, 45, 114, 961
EaeI	YGGCCR	3 cut(s)	80, 504, 766
EagI	CGGCCG	1 cut(s)	80
Eam1104I	CTCTTC	3 cut(s)	12, 548, 795
EarI	CTCTTC	3 cut(s)	12, 548, 795
EciI	GGCGGA	3 cut(s)	110, 217, 226
EclXI	CGGCCG	1 cut(s)	80
Eco130I	CCWWGG	4 cut(s)	519, 763, 924, 1044
Eco24I	GRGCYC	1 cut(s)	573
Eco31I	GGTCTC	1 cut(s)	711
Eco47I	GGWCC	2 cut(s)	149, 194
Eco52I	CGGCCG	1 cut(s)	80
Eco57I	CTGAAG	2 cut(s)	270, 819
Eco88I	CYCGRG	1 cut(s)	550
EcoRII	CCWGG	4 cut(s)	309, 364, 572, 1113
EcoT14I	CCWWGG	4 cut(s)	519, 763, 924, 1044
EcoT38I	GRGCYC	1 cut(s)	573
ErhI	CCWWGG	4 cut(s)	519, 763, 924, 1044
FaeI	CATG	8 cut(s)	165, 716, 767, 962, 1011, 1048, 1073, 1147
FalI	AAGNNNNNCTT	2 cut(s)	407, 439
FatI	CATG	8 cut(s)	161, 712, 763, 958, 1007, 1044, 1069, 1143
FauI	CCCGC	1 cut(s)	184
Fnu4HI	GCNGC	5 cut(s)	131, 134, 168, 478, 893
FokI	GGATG	3 cut(s)	19, 71, 611
FriOI	GRGCYC	1 cut(s)	573
Fsp4HI	GCNGC	5 cut(s)	131, 134, 168, 478, 893
FspBI	CTAG	1 cut(s)	293
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	5 cut(s)	131, 134, 168, 478, 893
GsuI	CTGGAG	1 cut(s)	938
HaeIII	GGCC	6 cut(s)	82, 101, 217, 364, 506, 768
HapII	CCGG	6 cut(s)	63, 79, 83, 102, 197, 230
HhaI	GCGC	1 cut(s)	172
Hin1II	CATG	8 cut(s)	165, 716, 767, 962, 1011, 1048, 1073, 1147
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HinfI	GANTC	5 cut(s)	179, 405, 650, 920, 1082
HpaII	CCGG	6 cut(s)	63, 79, 83, 102, 197, 230
HphI	GGTGA	3 cut(s)	566, 836, 1087
Hpy166II	GTNNAC	1 cut(s)	1024
Hpy188I	TCNGA	1 cut(s)	994
Hpy188III	TCNNGA	6 cut(s)	31, 293, 305, 349, 654, 917
Hpy8I	GTNNAC	1 cut(s)	1024
Hpy99I	CGWCG	3 cut(s)	17, 485, 491
HpyAV	CCTTC	4 cut(s)	120, 354, 409, 551
HpyCH4III	ACNGT	4 cut(s)	244, 623, 794, 1033
HpyCH4IV	ACGT	1 cut(s)	121
HpyCH4V	TGCA	7 cut(s)	141, 340, 817, 892, 902, 958, 1013
HpyF10VI	GCNNNNNNNGC	7 cut(s)	167, 208, 452, 483, 741, 823, 1170
HpyF3I	CTNAG	2 cut(s)	382, 441
HpySE526I	ACGT	1 cut(s)	121
Hsp92II	CATG	8 cut(s)	165, 716, 767, 962, 1011, 1048, 1073, 1147
HspAI	GCGC	1 cut(s)	170
Kzo9I	GATC	5 cut(s)	9, 27, 45, 114, 961
LguI	GCTCTTC	1 cut(s)	795
LmnI	GCTCC	2 cut(s)	106, 158
Lsp1109I	GCAGC	3 cut(s)	142, 464, 904
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	1 cut(s)	293
MaeII	ACGT	1 cut(s)	121
MaeIII	GTNAC	4 cut(s)	617, 829, 1075, 1156
MalI	GATC	5 cut(s)	11, 29, 47, 116, 963
MboI	GATC	5 cut(s)	9, 27, 45, 114, 961
MboII	GAAGA	8 cut(s)	29, 535, 602, 650, 812, 832, 866, 979
MfeI	CAATTG	1 cut(s)	461
MhlI	GDGCHC	1 cut(s)	573
MlsI	TGGCCA	1 cut(s)	768
MluCI	AATT	4 cut(s)	461, 935, 1059, 1090
MluNI	TGGCCA	1 cut(s)	768
MlyI	GAGTC	1 cut(s)	929
MmeI	TCCRAC	2 cut(s)	142, 1017
Mox20I	TGGCCA	1 cut(s)	768
MscI	TGGCCA	1 cut(s)	768
MseI	TTAA	1 cut(s)	255
MslI	CAYNNNNRTG	3 cut(s)	35, 552, 1043
Msp20I	TGGCCA	1 cut(s)	768
MspA1I	CMGCKG	2 cut(s)	133, 895
MspI	CCGG	6 cut(s)	63, 79, 83, 102, 197, 230
MspR9I	CCNGG	6 cut(s)	103, 198, 311, 366, 574, 1115
MunI	CAATTG	1 cut(s)	461
MvaI	CCWGG	4 cut(s)	311, 366, 574, 1115
MwoI	GCNNNNNNNGC	7 cut(s)	167, 208, 452, 483, 741, 823, 1170
NciI	CCSGG	2 cut(s)	103, 198
NcoI	CCATGG	2 cut(s)	763, 1044
NdeII	GATC	5 cut(s)	9, 27, 45, 114, 961
NlaIII	CATG	8 cut(s)	165, 716, 767, 962, 1011, 1048, 1073, 1147
NlaIV	GGNNCC	3 cut(s)	108, 195, 1050
NmeAIII	GCCGAG	1 cut(s)	532
NmuCI	GTSAC	3 cut(s)	829, 1075, 1156
NspI	RCATGY	1 cut(s)	1011
OliI	CACNNNNGTG	1 cut(s)	552
PciSI	GCTCTTC	1 cut(s)	795
PfeI	GAWTC	4 cut(s)	179, 405, 650, 1082
Pfl23II	CGTACG	1 cut(s)	122
PflMI	CCANNNNNTGG	1 cut(s)	1144
PfoI	TCCNGGA	1 cut(s)	1113
PkrI	GCNGC	5 cut(s)	132, 135, 169, 479, 894
PleI	GAGTC	1 cut(s)	928
PpsI	GAGTC	1 cut(s)	928
Psp6I	CCWGG	4 cut(s)	309, 364, 572, 1113
PspGI	CCWGG	4 cut(s)	309, 364, 572, 1113
PspLI	CGTACG	1 cut(s)	122
PspN4I	GGNNCC	3 cut(s)	108, 195, 1050
PspPI	GGNCC	2 cut(s)	149, 194
PstI	CTGCAG	1 cut(s)	904
PstNI	CAGNNNCTG	1 cut(s)	627
PvuII	CAGCTG	1 cut(s)	895
RsaI	GTAC	6 cut(s)	124, 241, 283, 512, 859, 908
RsaNI	GTAC	6 cut(s)	123, 240, 282, 511, 858, 907
RseI	CAYNNNNRTG	3 cut(s)	35, 552, 1043
SapI	GCTCTTC	1 cut(s)	795
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	5 cut(s)	131, 134, 168, 478, 893
Sau3AI	GATC	5 cut(s)	9, 27, 45, 114, 961
Sau96I	GGNCC	2 cut(s)	149, 194
ScaI	AGTACT	4 cut(s)	241, 283, 859, 908
SchI	GAGTC	1 cut(s)	929
ScrFI	CCNGG	6 cut(s)	103, 198, 311, 366, 574, 1115
SduI	GDGCHC	1 cut(s)	573
SfaNI	GCATC	1 cut(s)	49
SfcI	CTRYAG	1 cut(s)	900
SinI	GGWCC	2 cut(s)	149, 194
SmiMI	CAYNNNNRTG	3 cut(s)	35, 552, 1043
Sse9I	AATT	4 cut(s)	461, 935, 1059, 1090
SsiI	CCGC	7 cut(s)	95, 133, 136, 167, 191, 202, 211
SspMI	CTAG	1 cut(s)	293
StyD4I	CCNGG	6 cut(s)	101, 196, 309, 364, 572, 1113
StyI	CCWWGG	4 cut(s)	519, 763, 924, 1044
TaaI	ACNGT	4 cut(s)	244, 623, 794, 1033
TaiI	ACGT	1 cut(s)	124
TaqI	TCGA	4 cut(s)	12, 113, 182, 1131
TaqII	GACCGA	1 cut(s)	38
TasI	AATT	4 cut(s)	461, 935, 1059, 1090
TatI	WGTACW	5 cut(s)	239, 281, 510, 857, 906
TauI	GCSGC	2 cut(s)	136, 170
TfiI	GAWTC	4 cut(s)	179, 405, 650, 1082
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	4 cut(s)	799, 1020, 1036, 1045
TseFI	GTSAC	3 cut(s)	829, 1075, 1156
TseI	GCWGC	3 cut(s)	130, 477, 892
Tsp45I	GTSAC	3 cut(s)	829, 1075, 1156
TspDTI	ATGAA	4 cut(s)	603, 651, 714, 866
TspRI	CASTG	4 cut(s)	799, 1020, 1036, 1045
Van91I	CCANNNNNTGG	1 cut(s)	1144
VpaK11BI	GGWCC	2 cut(s)	149, 194
XbaI	TCTAGA	1 cut(s)	292
XceI	RCATGY	1 cut(s)	1011
XcmI	CCANNNNNNNNNTGG	1 cut(s)	159
XspI	CTAG	1 cut(s)	293
ZrmI	AGTACT	4 cut(s)	241, 283, 859, 908

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.