Rh6AG330500

Belongs to the glycosyltransferase 8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0018662
Physical Location & Seq
Reverse (-)
53200490 .. 53207401
6912 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG330500.1

Sequence Viewer

Length: 372 bp
ATGATTAGAGCTAAAGCATACATGACTTTTGCACCACCTAACTCACAGTTGGTGAAGGAGTTGAAACTGCGAACTAAAGAGGTGGACATGTGGTCGGTGGAACTCACAAGGATTCTGATTTATCTTGGAGAAAATGAGAAACATGGAGGCCTCACTATCCAAAGCAGCCGTGCTTTCCCAGACTGCTCTGCTATGGCCACAAAACTACGTTCTATGACCACAGTGCGGAAGAGCAAGTTGTGTTGCAGAAGAAGCAAGTCACATTTCTTTATCACCTTGCTGGAAGTACTAACCCAAAGGTCTTCATTGTCTTTCTTTGCAGCTGACTGCAGAGTACTTTGCTCTCGAGTCCAAGGAAAGGCAATTTCCTAA

Protein Analysis

123

Amino Acids

13.97

Weight (kDa)

10.04

Isoelectric Point (pI)

43.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018662)

Species Orthologous Gene IDs
rosa_laevigata RLG00000012126
rosa_multiflora Rmu_co8382315.1_g000001 Rmu_sc0003735.1_g000006
rosa_roxburghii Rroxscaffold_7G00176160
rosa_rugosa Rorug06G0218600
rosa_samantha Rh6AG330500 Rh6BG337300 Rh6CG343500 Rh6DG330800
rosa_wichuraiana Rw6G028690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 226
AcoI YGGCCR 1 cut(s) 195
AfaI GTAC 2 cut(s) 288, 336
AfiI CCNNNNNNNGG 2 cut(s) 225, 358
AflIII ACRYGT 1 cut(s) 87
AgsI TTSAA 1 cut(s) 64
AhdI GACNNNNNGTC 1 cut(s) 91
AluBI AGCT 2 cut(s) 11, 323
AluI AGCT 2 cut(s) 11, 323
Ama87I CYCGRG 1 cut(s) 345
AoxI GGCC 2 cut(s) 148, 195
ApeKI GCWGC 2 cut(s) 165, 320
AsuHPI GGTGA 2 cut(s) 64, 265
AvaI CYCGRG 1 cut(s) 345
BalI TGGCCA 1 cut(s) 197
BbsI GAAGAC 1 cut(s) 294
BbvI GCAGC 2 cut(s) 177, 332
BceAI ACGGC 1 cut(s) 153
BfmI CTRYAG 1 cut(s) 328
BisI GCNGC 2 cut(s) 166, 321
BlsI GCNGC 2 cut(s) 167, 322
BmcAI AGTACT 2 cut(s) 288, 336
BmeRI GACNNNNNGTC 1 cut(s) 91
BmeT110I CYCGRG 1 cut(s) 345
BpiI GAAGAC 1 cut(s) 294
BsaJI CCNNGG 1 cut(s) 352
Bsc4I CCNNNNNNNGG 2 cut(s) 225, 358
BseDI CCNNGG 1 cut(s) 352
BseLI CCNNNNNNNGG 2 cut(s) 225, 358
BseXI GCAGC 2 cut(s) 177, 332
BshFI GGCC 2 cut(s) 150, 197
BsiHKCI CYCGRG 1 cut(s) 345
BslI CCNNNNNNNGG 2 cut(s) 225, 358
BsnI GGCC 2 cut(s) 150, 197
BsoBI CYCGRG 1 cut(s) 345
BspACI CCGC 1 cut(s) 226
BspANI GGCC 2 cut(s) 150, 197
BspMAI CTGCAG 1 cut(s) 332
BspQI GCTCTTC 1 cut(s) 224
BssECI CCNNGG 1 cut(s) 352
BssT1I CCWWGG 1 cut(s) 352
Bst4CI ACNGT 2 cut(s) 48, 223
Bst6I CTCTTC 1 cut(s) 224
BstMWI GCNNNNNNNGC 1 cut(s) 252
BstNSI RCATGY 1 cut(s) 91
BstSFI CTRYAG 1 cut(s) 328
BstV1I GCAGC 2 cut(s) 177, 332
BstV2I GAAGAC 1 cut(s) 294
BsuRI GGCC 2 cut(s) 150, 197
BtsIMutI CAGTG 1 cut(s) 228
Csp6I GTAC 2 cut(s) 287, 335
CviAII CATG 3 cut(s) 22, 88, 143
CviJI RGCY 5 cut(s) 11, 150, 168, 197, 323
CviKI_1 RGCY 5 cut(s) 11, 150, 168, 197, 323
CviQI GTAC 2 cut(s) 287, 335
DriI GACNNNNNGTC 1 cut(s) 91
EaeI YGGCCR 1 cut(s) 195
Eam1104I CTCTTC 1 cut(s) 224
Eam1105I GACNNNNNGTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 224
Eco130I CCWWGG 1 cut(s) 352
Eco147I AGGCCT 1 cut(s) 150
Eco88I CYCGRG 1 cut(s) 345
EcoT14I CCWWGG 1 cut(s) 352
ErhI CCWWGG 1 cut(s) 352
FaeI CATG 3 cut(s) 25, 91, 146
FaiI YATR 6 cut(s) 19, 23, 89, 144, 194, 215
FatI CATG 3 cut(s) 21, 87, 142
Fnu4HI GCNGC 2 cut(s) 166, 321
Fsp4HI GCNGC 2 cut(s) 166, 321
GluI GCNGC 2 cut(s) 166, 321
HaeIII GGCC 2 cut(s) 150, 197
Hin1II CATG 3 cut(s) 25, 91, 146
HinfI GANTC 2 cut(s) 112, 348
HphI GGTGA 2 cut(s) 64, 265
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 1 cut(s) 117
Hpy188III TCNNGA 1 cut(s) 345
Hpy8I GTNNAC 1 cut(s) 85
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 2 cut(s) 48, 223
HpyCH4IV ACGT 1 cut(s) 208
HpyCH4V TGCA 4 cut(s) 32, 246, 320, 330
HpyF10VI GCNNNNNNNGC 1 cut(s) 252
HpySE526I ACGT 1 cut(s) 208
Hsp92II CATG 3 cut(s) 25, 91, 146
LguI GCTCTTC 1 cut(s) 224
LpnPI CCDG 2 cut(s) 192, 266
Lsp1109I GCAGC 2 cut(s) 177, 332
MaeII ACGT 1 cut(s) 208
MaeIII GTNAC 1 cut(s) 258
MboII GAAGA 3 cut(s) 241, 261, 294
MlsI TGGCCA 1 cut(s) 197
MluCI AATT 1 cut(s) 363
MluNI TGGCCA 1 cut(s) 197
MlyI GAGTC 1 cut(s) 357
MnlI CCTC 3 cut(s) 73, 140, 161
Mox20I TGGCCA 1 cut(s) 197
MscI TGGCCA 1 cut(s) 197
Msp20I TGGCCA 1 cut(s) 197
MspA1I CMGCKG 1 cut(s) 323
MwoI GCNNNNNNNGC 1 cut(s) 252
NlaIII CATG 3 cut(s) 25, 91, 146
NmuCI GTSAC 1 cut(s) 258
NspI RCATGY 1 cut(s) 91
PaeR7I CTCGAG 1 cut(s) 345
PceI AGGCCT 1 cut(s) 150
PciI ACATGT 1 cut(s) 87
PciSI GCTCTTC 1 cut(s) 224
PfeI GAWTC 1 cut(s) 112
PkrI GCNGC 2 cut(s) 167, 322
PleI GAGTC 1 cut(s) 356
PpsI GAGTC 1 cut(s) 356
PscI ACATGT 1 cut(s) 87
PstI CTGCAG 1 cut(s) 332
PvuII CAGCTG 1 cut(s) 323
RsaI GTAC 2 cut(s) 288, 336
RsaNI GTAC 2 cut(s) 287, 335
SapI GCTCTTC 1 cut(s) 224
SatI GCNGC 2 cut(s) 166, 321
ScaI AGTACT 2 cut(s) 288, 336
SchI GAGTC 1 cut(s) 357
SetI ASST 7 cut(s) 13, 40, 84, 211, 278, 302, 325
SfcI CTRYAG 1 cut(s) 328
Sfr274I CTCGAG 1 cut(s) 345
SlaI CTCGAG 1 cut(s) 345
SmlI CTYRAG 1 cut(s) 345
SmoI CTYRAG 1 cut(s) 345
Sse9I AATT 1 cut(s) 363
SseBI AGGCCT 1 cut(s) 150
SsiI CCGC 1 cut(s) 226
StuI AGGCCT 1 cut(s) 150
StyI CCWWGG 1 cut(s) 352
TaaI ACNGT 2 cut(s) 48, 223
TaiI ACGT 1 cut(s) 211
TaqI TCGA 1 cut(s) 346
TasI AATT 1 cut(s) 363
TatI WGTACW 2 cut(s) 286, 334
TfiI GAWTC 1 cut(s) 112
TscAI CASTG 1 cut(s) 228
TseFI GTSAC 1 cut(s) 258
TseI GCWGC 2 cut(s) 165, 320
Tsp45I GTSAC 1 cut(s) 258
TspDTI ATGAA 1 cut(s) 294
TspRI CASTG 1 cut(s) 228
XceI RCATGY 1 cut(s) 91
XhoI CTCGAG 1 cut(s) 345
ZrmI AGTACT 2 cut(s) 288, 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.