Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0009372

Physical Location & Seq

Genomic Coordinates Reverse (-)

34177216 .. 34198953

Gene Structure 21738 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013622

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2616 bp

ATGCTTCTTCGCCTTCCTTCACCTTCTCTCTCTTCTCTCCTTTCCACTCCCACTCCCACGCCCAAACCCTCTCGATTCTCTCCGGCTCGGCCCCGCCGCTCGCTTTTCCGATGCGCCGCCCTCAAAAACGACGTCGACGTCGACATCGATGCCTTCACCGCCAAGTCCGGCTACCTCTTCAAGCTCAGCGCGTCGGATGCCAACTCCTTGGCCGACTATGATATCTCCAAAATTGGCGCCATTTACCGCCGGAAACCTCTCGTTGTTTTCCGTCGACTCCTACAGATCGCCCTCACTTTCGGCTACTGGTTTGCGCTTCGCTTCATTGATGCTCAAATGGAACACTCCGACCAAATGTTCGAGGTTAGAGCTGCTGAGCTTCGGCAAATACTAGTAGAACTTGGACCGGCGTATGTCAAAATCGCTCAGGCTATTTCGTCTCGACCTGACTTGATACCACCAGCATACTTGGATGAACTCTCACTGTTGCAAGATCGAATATCTCCATTTTCTAATGAAGATGCTATAAAGACAATAGAAAATGAACTTGCTTTACCAATAGACGAGCTTTTCTCTGAGATCTCACCAGAACCTGTAGCTGCAGCTTCTCTTGGACAGGTGTATCAAGCTAGGCTTCGCCGTAGGGGACAGCTTGTTGCAGTTAAAGTACAAAGGCCTGGAGTACAAGCTGCTATTTCCTTAGACATATTGATCTTGCGTTCTCTAGCTGGTCTTCTCAGGAGAATAAGAAAATTAAACACTGATCTTCAGGCAGTTGTTGATGAATGGGCATCAAGTCTCTTTCGGGAGATGGACTACTGGAAGGAAGCAAATAATGGTATCAAGTTCAGGCAGTTATATGGTGGTATACCTGATGTTTTGGTTCCAAAAATGTATCTGGAACACACAACTCGTAGGGTGCTTGTGATGGAGTGGGTGGAGGGACAGAAGCTGTCAGAAGTGAACGATCTTTACTTGGTGGAGGTTGGGACTTACTGCTCTTTCAATCAGCTTCTGGAATGTGGTTTCTATCATGCAGATCCACACCCTGGAAACCTTCTTCGCACATATGATGGGAAACTTGCTTATTTAGATTTTGGTATGATGGGTGAATTTAAAGAAGAACTCCGCAATGGATTTATTGAAGCTTCACTCCATCTTGTAAACAGCAATTTTGATGCATTGGCCAAGGACTTTGTTACTCTTGGGCTTATTCCACCAACTGTAGACAAGGAAGCTGTTACGAAGGCTTTAACAGATTTTCAATCTTCAGTTGTTTCGGGTTTGGGATTATTATTGTACAAATTCAAATTTCGCATACCTTCTTATTTTTCTCTCGTCATTCGAAGTCTTGCTGTTCTGGAAGGTGTTGCTATTGGCTCCAACCCAGATTACAAGGTTTTAGGTAGCACATACCCATGGATTGCTAGGAAAATACTGACTGACAACTCACCTCAACTCAAGTCTTCTCTGCAGGCCCTTCTTTATGAGGAAGGCGTATTCAGAATAGATCGTCTAGAGTCTCTATTTGCAGAGTCCCTCCGAGCCAAAACAGAGAGAGCTATGGTTGGAAAACAAGATGACGATGCTAATTCTAGGGTACTTATCAAGCAAATCCTTTCTTTTATGTTAACAGAGAAGGGTGCGTTTGTGAAGGATATACTTCTTCAAGAATTTGTTAAGGGATTGGATGCACTTGGGCTGGCAACCTTGGATTCTCTCACTACTGTGGCTACTACAAATGTTCCACTCATTGCTCCCTTTTCATTCTCTACAATGACGAATGAAGACAAGATCAACTTAAGAACCCTACGTCGCCTTCTGCTATTGCTGTCAGGTTCTCAGACAAATGAAAACTCAAAAGCAGTGATTAGAGAGGATGGTCCGTACGAGAATCAGCAAATGAACTTGGCGGAACCATCATTACTTTTCAATCAACTTGGATCCATTCAAGAAGTTCTACCTATCCTCTCTGTCATTCCGGAGCTCCCACCAGAATCACAACAGCAGTTACTTAATTTGCCAGCTGATCTCACCGGACGTCTAATTTCCCGTGCCGTTGCAAGGACAATCAGAAGGATTCTTGGAATCGGAATCCATGGGGTCAACACTGATCTTGAATCTGCAACCATCTCCAATCGGCTTCGTGACTCTTCTAGAATACGCAAGAAGAAGAAGAAGCTCCAAGTCAAATATGAGTGCCACCTACTTCTCCAGCAGTCCTACACCAAATGGAAATCCAACCATCCTCTTCCAGGTCGAGTACGCCCTCGAAGTCGTGCGAAAGGGTACGTCGGCATCTGTGGCACCAACACCATCGTTCTCGGCGTCGAGAAGAAGTCCACCGCCAAGCTTCAAGACTCCAGATGGGGTCCGCAGCTAGACCAAGCTAACATCTTTATCTTTCTGAACAGTGTTCCAAATACACTTGTCATTGCAAACTGTGAAGTTGTCAAACCTAGGGTTGCAGCTGCAGAGCACATATCACAGTTCAATGAAGAAGCATGCTCTCCTTTTGTAAAGAAGTATAAAACTATAATACATCCTAGAGAGCCGAATGGCTTGAGACCCATGGCCCAGGTGACAGGACTCACACACAAGGACCGAAGGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC1

Protein Analysis

872

Amino Acids

97.75

Weight (kDa)

9.25

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC1	PF03109	163 - 397	5.5e-67	ABC1 atypical kinase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71810
fragaria_vesca	FvH4_2g12660 FvH4_2g12660 FvH4_2g12660 FvH4_2g12660
malus_domestica	MD10G1042100.v1.1
prunus_persica	Prupe.8G046100_v2.0.a1 Prupe.8G046100_v2.0.a1 Prupe.8G046100_v2.0.a1 Prupe.8G046100_v2.0.a1
pyrus_communis	pycom10g02920
rosa_chinensis	RchiOBHm_Chr6g0273371
rosa_laevigata	RLG00000013622
rosa_multiflora	Rmu_sc0000239.1_g000003
rosa_roxburghii	Rroxscaffold_7G00195430
rosa_rugosa	Rorug06G0074300 Rorug06G0074400
rosa_samantha	Rh6AG189500 Rh6BG192900 Rh6CG192700 Rh6DG184200
rosa_wichuraiana	Rw6G016490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	137
AatII	GACGTC	3 cut(s)	135, 141, 2044
AccB1I	GGYRCC	2 cut(s)	236, 2306
AccB7I	CCANNNNNTGG	1 cut(s)	1049
AccBSI	CCGCTC	1 cut(s)	99
AccI	GTMKAC	5 cut(s)	135, 141, 274, 868, 1227
AccII	CGCG	1 cut(s)	191
AccIII	TCCGGA	1 cut(s)	1981
AciI	CCGC	9 cut(s)	94, 97, 117, 159, 247, 1129, 1913, 2346, 2375
AclWI	GGATC	3 cut(s)	1034, 1938, 1951
AcoI	YGGCCR	2 cut(s)	210, 1185
AcsI	RAATTY	4 cut(s)	1112, 1304, 1310, 1673
AcuI	CTGAAG	2 cut(s)	752, 1254
AcyI	GRCGYC	5 cut(s)	132, 138, 237, 2041, 2328
AfaI	GTAC	8 cut(s)	669, 684, 1301, 1602, 1889, 2265, 2291, 2612
AfiI	CCNNNNNNNGG	3 cut(s)	1049, 2064, 2255
AflII	CTTAAG	1 cut(s)	1801
AhlI	ACTAGT	1 cut(s)	391
AjnI	CCWGG	4 cut(s)	676, 1048, 2254, 2577
AleI	CACNNNNGTG	1 cut(s)	1727
Alw21I	GWGCWC	2 cut(s)	1989, 2481
Alw26I	GTCTC	4 cut(s)	444, 803, 1527, 2560
AlwI	GGATC	3 cut(s)	1034, 1938, 1951
AlwNI	CAGNNNCTG	3 cut(s)	593, 952, 1015
Aor13HI	TCCGGA	1 cut(s)	1981
AoxI	GGCC	6 cut(s)	89, 210, 674, 1185, 1476, 2574
ApeKI	GCWGC	7 cut(s)	371, 599, 602, 689, 2377, 2468, 2471
ApoI	RAATTY	4 cut(s)	1112, 1304, 1310, 1673
ArsI	GACNNNNNNTTYG	4 cut(s)	117, 149, 341, 373
AspA2I	CCTAGG	1 cut(s)	2459
AspLEI	GCGC	4 cut(s)	116, 191, 239, 316
AspS9I	GGNCC	7 cut(s)	90, 404, 1477, 1883, 2372, 2575, 2602
AsuHPI	GGTGA	7 cut(s)	12, 148, 576, 1121, 1443, 2026, 2593
AsuII	TTCGAA	1 cut(s)	1345
AvaII	GGWCC	4 cut(s)	404, 1883, 2372, 2602
AvrII	CCTAGG	1 cut(s)	2459
BaeI	ACNNNNGTAYC	2 cut(s)	605, 638
BalI	TGGCCA	1 cut(s)	1187
BamHI	GGATCC	1 cut(s)	1943
BanI	GGYRCC	2 cut(s)	236, 2306
BanII	GRGCYC	1 cut(s)	1989
BbsI	GAAGAC	3 cut(s)	725, 1458, 1794
Bbv12I	GWGCWC	2 cut(s)	1989, 2481
BbvI	GCAGC	7 cut(s)	358, 586, 614, 676, 2389, 2458, 2480
BceAI	ACGGC	2 cut(s)	624, 2042
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BciT130I	CCWGG	4 cut(s)	678, 1050, 2256, 2579
BcoDI	GTCTC	4 cut(s)	444, 803, 1527, 2560
BcuI	ACTAGT	1 cut(s)	391
BfmI	CTRYAG	6 cut(s)	281, 594, 600, 1224, 1472, 2472
BfoI	RGCGCY	1 cut(s)	240
BfrI	CTTAAG	1 cut(s)	1801
BglII	AGATCT	1 cut(s)	579
BisI	GCNGC	9 cut(s)	97, 117, 372, 600, 603, 690, 2378, 2469, 2472
BlnI	CCTAGG	1 cut(s)	2459
BlpI	GCTNAGC	2 cut(s)	185, 375
BlsI	GCNGC	9 cut(s)	98, 118, 373, 601, 604, 691, 2379, 2470, 2473
Bme1390I	CCNGG	4 cut(s)	678, 1050, 2256, 2579
Bme18I	GGWCC	4 cut(s)	404, 1883, 2372, 2602
BmgT120I	GGNCC	7 cut(s)	90, 404, 1477, 1883, 2372, 2575, 2602
BmiI	GGNNCC	8 cut(s)	92, 238, 885, 1381, 1917, 1945, 2308, 2373
BmrFI	CCNGG	4 cut(s)	678, 1050, 2256, 2579
BpiI	GAAGAC	3 cut(s)	725, 1458, 1794
BplI	GAGNNNNNCTC	2 cut(s)	557, 589
BpmI	CTGGAG	3 cut(s)	699, 2198, 2347
Bpu10I	CCTNAGC	1 cut(s)	426
Bpu1102I	GCTNAGC	2 cut(s)	185, 375
Bpu14I	TTCGAA	1 cut(s)	1345
BpuEI	CTTGAG	2 cut(s)	1445, 2584
Bsa29I	ATCGAT	1 cut(s)	147
BsaHI	GRCGYC	5 cut(s)	132, 138, 237, 2041, 2328
BsaI	GGTCTC	1 cut(s)	2560
BsaJI	CCNNGG	9 cut(s)	207, 1048, 1188, 1418, 1710, 2098, 2459, 2571, 2577
BsaWI	WCCGGW	2 cut(s)	1981, 2036
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bsc4I	CCNNNNNNNGG	3 cut(s)	1049, 2064, 2255
Bse118I	RCCGGY	1 cut(s)	406
Bse1I	ACTGG	2 cut(s)	311, 824
Bse3DI	GCAATG	3 cut(s)	1138, 1752, 2433
BseAI	TCCGGA	1 cut(s)	1981
BseBI	CCWGG	4 cut(s)	678, 1050, 2256, 2579
BseCI	ATCGAT	1 cut(s)	147
BseDI	CCNNGG	9 cut(s)	207, 1048, 1188, 1418, 1710, 2098, 2459, 2571, 2577
BseGI	GGATG	6 cut(s)	202, 478, 1696, 1885, 2245, 2542
BseLI	CCNNNNNNNGG	3 cut(s)	1049, 2064, 2255
BseMI	GCAATG	3 cut(s)	1138, 1752, 2433
BseMII	CTCAG	6 cut(s)	199, 366, 440, 567, 751, 1856
BseNI	ACTGG	2 cut(s)	311, 824
BseXI	GCAGC	7 cut(s)	358, 586, 614, 676, 2389, 2458, 2480
Bsh1236I	CGCG	1 cut(s)	191
BshFI	GGCC	6 cut(s)	91, 212, 676, 1187, 1478, 2576
BshNI	GGYRCC	2 cut(s)	236, 2306
BshVI	ATCGAT	1 cut(s)	147
BsiHKAI	GWGCWC	2 cut(s)	1989, 2481
BsiSI	CCGG	6 cut(s)	83, 168, 250, 407, 1982, 2037
BsiWI	CGTACG	1 cut(s)	1887
BslFI	GGGAC	4 cut(s)	660, 957, 1003, 1522
BslI	CCNNNNNNNGG	3 cut(s)	1049, 2064, 2255
BsmAI	GTCTC	4 cut(s)	444, 803, 1527, 2560
BsmBI	CGTCTC	1 cut(s)	444
BsmFI	GGGAC	4 cut(s)	660, 957, 1003, 1522
BsnI	GGCC	6 cut(s)	91, 212, 676, 1187, 1478, 2576
Bso31I	GGTCTC	1 cut(s)	2560
Bsp119I	TTCGAA	1 cut(s)	1345
Bsp1286I	GDGCHC	2 cut(s)	1989, 2481
Bsp13I	TCCGGA	1 cut(s)	1981
Bsp1407I	TGTACA	1 cut(s)	1299
Bsp1720I	GCTNAGC	2 cut(s)	185, 375
Bsp19I	CCATGG	3 cut(s)	1418, 2098, 2571
BspACI	CCGC	9 cut(s)	94, 97, 117, 159, 247, 1129, 1913, 2346, 2375
BspANI	GGCC	6 cut(s)	91, 212, 676, 1187, 1478, 2576
BspCNI	CTCAG	6 cut(s)	198, 367, 439, 568, 750, 1855
BspDI	ATCGAT	1 cut(s)	147
BspEI	TCCGGA	1 cut(s)	1981
BspFNI	CGCG	1 cut(s)	191
BspLI	GGNNCC	8 cut(s)	92, 238, 885, 1381, 1917, 1945, 2308, 2373
BspMAI	CTGCAG	3 cut(s)	604, 1476, 2476
BspPI	GGATC	3 cut(s)	1034, 1938, 1951
BspT104I	TTCGAA	1 cut(s)	1345
BspT107I	GGYRCC	2 cut(s)	236, 2306
BspTI	CTTAAG	1 cut(s)	1801
BspTNI	GGTCTC	1 cut(s)	2560
BsrBI	CCGCTC	1 cut(s)	99
BsrDI	GCAATG	3 cut(s)	1138, 1752, 2433
BsrFI	RCCGGY	1 cut(s)	406
BsrGI	TGTACA	1 cut(s)	1299
BsrI	ACTGG	2 cut(s)	311, 824
BssAI	RCCGGY	1 cut(s)	406
BssECI	CCNNGG	9 cut(s)	207, 1048, 1188, 1418, 1710, 2098, 2459, 2571, 2577
BssNAI	GTATAC	1 cut(s)	869
BssNI	GRCGYC	5 cut(s)	132, 138, 237, 2041, 2328
BssT1I	CCWWGG	7 cut(s)	207, 1188, 1418, 1710, 2098, 2459, 2571
Bst1107I	GTATAC	1 cut(s)	869
Bst2UI	CCWGG	4 cut(s)	678, 1050, 2256, 2579
Bst4CI	ACNGT	6 cut(s)	486, 1225, 1729, 2414, 2444, 2490
Bst6I	CTCTTC	4 cut(s)	37, 182, 2158, 2256
BstACI	GRCGYC	5 cut(s)	132, 138, 237, 2041, 2328
BstAFI	CTTAAG	1 cut(s)	1801
BstAUI	TGTACA	1 cut(s)	1299
BstBI	TTCGAA	1 cut(s)	1345
BstC8I	GCNNGC	5 cut(s)	101, 1476, 1704, 2025, 2506
BstDEI	CTNAG	7 cut(s)	185, 375, 426, 576, 700, 737, 1842
BstDSI	CCRYGG	3 cut(s)	1418, 2098, 2571
BstENI	CCTNNNNNAGG	1 cut(s)	2253
BstF5I	GGATG	6 cut(s)	202, 478, 1696, 1885, 2245, 2542
BstFNI	CGCG	1 cut(s)	191
BstH2I	RGCGCY	1 cut(s)	240
BstHHI	GCGC	4 cut(s)	116, 191, 239, 316
BstMAI	GTCTC	4 cut(s)	444, 803, 1527, 2560
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 197, 2304
BstNI	CCWGG	4 cut(s)	678, 1050, 2256, 2579
BstNSI	RCATGY	1 cut(s)	2508
BstSCI	CCNGG	4 cut(s)	676, 1048, 2254, 2577
BstSFI	CTRYAG	6 cut(s)	281, 594, 600, 1224, 1472, 2472
BstUI	CGCG	1 cut(s)	191
BstV1I	GCAGC	7 cut(s)	358, 586, 614, 676, 2389, 2458, 2480
BstV2I	GAAGAC	3 cut(s)	725, 1458, 1794
BstX2I	RGATCY	3 cut(s)	579, 1039, 1943
BstXI	CCANNNNNNTGG	1 cut(s)	208
BstYI	RGATCY	3 cut(s)	579, 1039, 1943
BstZ17I	GTATAC	1 cut(s)	869
Bsu15I	ATCGAT	1 cut(s)	147
BsuRI	GGCC	6 cut(s)	91, 212, 676, 1187, 1478, 2576
BsuTUI	ATCGAT	1 cut(s)	147
BtgI	CCRYGG	3 cut(s)	1418, 2098, 2571
BtsCI	GGATG	6 cut(s)	202, 478, 1696, 1885, 2245, 2542
BtsI	GCAGTG	1 cut(s)	1872
BtsIMutI	CAGTG	5 cut(s)	482, 759, 1872, 2109, 2419
Cac8I	GCNNGC	5 cut(s)	101, 1476, 1704, 2025, 2506
CaiI	CAGNNNCTG	3 cut(s)	593, 952, 1015
CfoI	GCGC	4 cut(s)	116, 191, 239, 316
Cfr10I	RCCGGY	1 cut(s)	406
Cfr13I	GGNCC	7 cut(s)	90, 404, 1477, 1883, 2372, 2575, 2602
ClaI	ATCGAT	1 cut(s)	147
CseI	GACGC	2 cut(s)	180, 2317
Csp6I	GTAC	8 cut(s)	668, 683, 1300, 1601, 1888, 2264, 2290, 2611
CviAII	CATG	5 cut(s)	1034, 1419, 2099, 2505, 2572
CviQI	GTAC	8 cut(s)	668, 683, 1300, 1601, 1888, 2264, 2290, 2611
DdeI	CTNAG	7 cut(s)	185, 375, 426, 576, 700, 737, 1842
DinI	GGCGCC	1 cut(s)	238
DraI	TTTAAA	1 cut(s)	1117
DrdI	GACNNNNNNGTC	1 cut(s)	137
DseDI	GACNNNNNNGTC	1 cut(s)	137
EaeI	YGGCCR	2 cut(s)	210, 1185
Eam1104I	CTCTTC	4 cut(s)	37, 182, 2158, 2256
EarI	CTCTTC	4 cut(s)	37, 182, 2158, 2256
EciI	GGCGGA	1 cut(s)	1928
Ecl136II	GAGCTC	1 cut(s)	1987
Eco130I	CCWWGG	7 cut(s)	207, 1188, 1418, 1710, 2098, 2459, 2571
Eco147I	AGGCCT	1 cut(s)	676
Eco24I	GRGCYC	1 cut(s)	1989
Eco31I	GGTCTC	1 cut(s)	2560
Eco32I	GATATC	1 cut(s)	223
Eco47I	GGWCC	4 cut(s)	404, 1883, 2372, 2602
Eco53kI	GAGCTC	1 cut(s)	1987
Eco57I	CTGAAG	2 cut(s)	752, 1254
EcoICRI	GAGCTC	1 cut(s)	1987
EcoNI	CCTNNNNNAGG	1 cut(s)	2253
EcoO109I	RGGNCCY	1 cut(s)	1477
EcoRII	CCWGG	4 cut(s)	676, 1048, 2254, 2577
EcoRV	GATATC	1 cut(s)	223
EcoT14I	CCWWGG	7 cut(s)	207, 1188, 1418, 1710, 2098, 2459, 2571
EcoT22I	ATGCAT	1 cut(s)	1183
EcoT38I	GRGCYC	1 cut(s)	1989
EgeI	GGCGCC	1 cut(s)	238
EheI	GGCGCC	1 cut(s)	238
ErhI	CCWWGG	7 cut(s)	207, 1188, 1418, 1710, 2098, 2459, 2571
Esp3I	CGTCTC	1 cut(s)	444
FaeI	CATG	5 cut(s)	1037, 1422, 2102, 2508, 2575
FalI	AAGNNNNNCTT	4 cut(s)	618, 650, 1784, 1816
FaqI	GGGAC	4 cut(s)	660, 957, 1003, 1522
FatI	CATG	5 cut(s)	1033, 1418, 2098, 2504, 2571
FauI	CCCGC	1 cut(s)	101
FauNDI	CATATG	1 cut(s)	1069
FblI	GTMKAC	5 cut(s)	135, 141, 274, 868, 1227
Fnu4HI	GCNGC	9 cut(s)	97, 117, 372, 600, 603, 690, 2378, 2469, 2472
FokI	GGATG	6 cut(s)	209, 485, 1703, 1892, 2232, 2529
FriOI	GRGCYC	1 cut(s)	1989
Fsp4HI	GCNGC	9 cut(s)	97, 117, 372, 600, 603, 690, 2378, 2469, 2472
GlaI	GCGC	4 cut(s)	115, 190, 238, 315
GluI	GCNGC	9 cut(s)	97, 117, 372, 600, 603, 690, 2378, 2469, 2472
GsuI	CTGGAG	3 cut(s)	699, 2198, 2347
HaeII	RGCGCY	1 cut(s)	240
HaeIII	GGCC	6 cut(s)	91, 212, 676, 1187, 1478, 2576
HapII	CCGG	6 cut(s)	83, 168, 250, 407, 1982, 2037
HgaI	GACGC	2 cut(s)	180, 2317
HhaI	GCGC	4 cut(s)	116, 191, 239, 316
Hin1I	GRCGYC	5 cut(s)	132, 138, 237, 2041, 2328
Hin1II	CATG	5 cut(s)	1037, 1422, 2102, 2508, 2575
Hin6I	GCGC	4 cut(s)	114, 189, 237, 314
HinP1I	GCGC	4 cut(s)	114, 189, 237, 314
HincII	GTYRAC	5 cut(s)	136, 142, 275, 1632, 2107
HindII	GTYRAC	5 cut(s)	136, 142, 275, 1632, 2107
HindIII	AAGCTT	2 cut(s)	1146, 2351
HpaI	GTTAAC	1 cut(s)	1632
HpaII	CCGG	6 cut(s)	83, 168, 250, 407, 1982, 2037
HphI	GGTGA	7 cut(s)	12, 148, 576, 1121, 1443, 2026, 2593
Hpy99I	CGWCG	9 cut(s)	134, 137, 140, 143, 196, 276, 1818, 2297, 2333
HpyCH4III	ACNGT	6 cut(s)	486, 1225, 1729, 2414, 2444, 2490
HpyCH4IV	ACGT	5 cut(s)	132, 138, 1813, 2041, 2292
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 197, 2304
HpyF3I	CTNAG	7 cut(s)	185, 375, 426, 576, 700, 737, 1842
HpySE526I	ACGT	5 cut(s)	132, 138, 1813, 2041, 2292
Hsp92I	GRCGYC	5 cut(s)	132, 138, 237, 2041, 2328
Hsp92II	CATG	5 cut(s)	1037, 1422, 2102, 2508, 2575
HspAI	GCGC	4 cut(s)	114, 189, 237, 314
KasI	GGCGCC	1 cut(s)	236
Kpn2I	TCCGGA	1 cut(s)	1981
KspAI	GTTAAC	1 cut(s)	1632
LmnI	GCTCC	5 cut(s)	1385, 1762, 1984, 1992, 2187
Lsp1109I	GCAGC	7 cut(s)	358, 586, 614, 676, 2389, 2458, 2480
MaeII	ACGT	5 cut(s)	132, 138, 1813, 2041, 2292
MaeIII	GTNAC	5 cut(s)	1198, 1240, 2010, 2147, 2581
MbiI	CCGCTC	1 cut(s)	99
MflI	RGATCY	3 cut(s)	579, 1039, 1943
MhlI	GDGCHC	2 cut(s)	1989, 2481
MlsI	TGGCCA	1 cut(s)	1187
MluNI	TGGCCA	1 cut(s)	1187
Mly113I	GGCGCC	1 cut(s)	237
MlyI	GAGTC	6 cut(s)	270, 1529, 1544, 2144, 2354, 2583
MmeI	TCCRAC	5 cut(s)	174, 372, 1407, 1549, 2265
Mox20I	TGGCCA	1 cut(s)	1187
Mph1103I	ATGCAT	1 cut(s)	1183
MroI	TCCGGA	1 cut(s)	1981
MscI	TGGCCA	1 cut(s)	1187
MseI	TTAA	8 cut(s)	663, 755, 1116, 1253, 1631, 1680, 1802, 2016
MslI	CAYNNNNRTG	2 cut(s)	1417, 1727
Msp20I	TGGCCA	1 cut(s)	1187
MspA1I	CMGCKG	2 cut(s)	2027, 2471
MspCI	CTTAAG	1 cut(s)	1801
MspI	CCGG	6 cut(s)	83, 168, 250, 407, 1982, 2037
MspR9I	CCNGG	4 cut(s)	678, 1050, 2256, 2579
MvaI	CCWGG	4 cut(s)	678, 1050, 2256, 2579
MvnI	CGCG	1 cut(s)	191
MwoI	GCNNNNNNNGC	3 cut(s)	158, 197, 2304
NarI	GGCGCC	1 cut(s)	237
NcoI	CCATGG	3 cut(s)	1418, 2098, 2571
NdeI	CATATG	1 cut(s)	1069
NlaIII	CATG	5 cut(s)	1037, 1422, 2102, 2508, 2575
NlaIV	GGNNCC	8 cut(s)	92, 238, 885, 1381, 1917, 1945, 2308, 2373
NmeAIII	GCCGAG	2 cut(s)	67, 2304
NmuCI	GTSAC	2 cut(s)	2147, 2581
NsiI	ATGCAT	1 cut(s)	1183
NspI	RCATGY	1 cut(s)	2508
NspV	TTCGAA	1 cut(s)	1345
OliI	CACNNNNGTG	1 cut(s)	1727
PaeI	GCATGC	1 cut(s)	2508
PceI	AGGCCT	1 cut(s)	676
PcsI	WCGNNNNNNNCGW	4 cut(s)	135, 138, 144, 2325
PfeI	GAWTC	8 cut(s)	75, 1715, 1894, 1997, 2080, 2088, 2094, 2120
Pfl23II	CGTACG	1 cut(s)	1887
PflMI	CCANNNNNTGG	1 cut(s)	1049
PkrI	GCNGC	9 cut(s)	98, 118, 373, 601, 604, 691, 2379, 2470, 2473
PleI	GAGTC	6 cut(s)	270, 1528, 1543, 2144, 2354, 2583
PluTI	GGCGCC	1 cut(s)	240
PpsI	GAGTC	6 cut(s)	270, 1528, 1543, 2144, 2354, 2583
Psp124BI	GAGCTC	1 cut(s)	1989
Psp6I	CCWGG	4 cut(s)	676, 1048, 2254, 2577
PspGI	CCWGG	4 cut(s)	676, 1048, 2254, 2577
PspLI	CGTACG	1 cut(s)	1887
PspN4I	GGNNCC	8 cut(s)	92, 238, 885, 1381, 1917, 1945, 2308, 2373
PspPI	GGNCC	7 cut(s)	90, 404, 1477, 1883, 2372, 2575, 2602
PsrI	GAACNNNNNNTAC	6 cut(s)	537, 569, 956, 988, 1908, 1940
PstI	CTGCAG	3 cut(s)	604, 1476, 2476
PstNI	CAGNNNCTG	3 cut(s)	593, 952, 1015
PsuI	RGATCY	3 cut(s)	579, 1039, 1943
PvuII	CAGCTG	2 cut(s)	2027, 2471
RsaI	GTAC	8 cut(s)	669, 684, 1301, 1602, 1889, 2265, 2291, 2612
RsaNI	GTAC	8 cut(s)	668, 683, 1300, 1601, 1888, 2264, 2290, 2611
RseI	CAYNNNNRTG	2 cut(s)	1417, 1727
SacI	GAGCTC	1 cut(s)	1989
SalI	GTCGAC	3 cut(s)	134, 140, 273
SaqAI	TTAA	8 cut(s)	663, 755, 1116, 1253, 1631, 1680, 1802, 2016
SatI	GCNGC	9 cut(s)	97, 117, 372, 600, 603, 690, 2378, 2469, 2472
Sau96I	GGNCC	7 cut(s)	90, 404, 1477, 1883, 2372, 2575, 2602
SchI	GAGTC	6 cut(s)	270, 1529, 1544, 2144, 2354, 2583
ScrFI	CCNGG	4 cut(s)	678, 1050, 2256, 2579
SduI	GDGCHC	2 cut(s)	1989, 2481
SfcI	CTRYAG	6 cut(s)	281, 594, 600, 1224, 1472, 2472
SfoI	GGCGCC	1 cut(s)	238
SfuI	TTCGAA	1 cut(s)	1345
SgrDI	CGTCGACG	1 cut(s)	134
SinI	GGWCC	4 cut(s)	404, 1883, 2372, 2602
SmiMI	CAYNNNNRTG	2 cut(s)	1417, 1727
SmlI	CTYRAG	3 cut(s)	1460, 1801, 2563
SmoI	CTYRAG	3 cut(s)	1460, 1801, 2563
SpeI	ACTAGT	1 cut(s)	391
SphI	GCATGC	1 cut(s)	2508
SseBI	AGGCCT	1 cut(s)	676
SsiI	CCGC	9 cut(s)	94, 97, 117, 159, 247, 1129, 1913, 2346, 2375
SspDI	GGCGCC	1 cut(s)	236
SstI	GAGCTC	1 cut(s)	1989
StuI	AGGCCT	1 cut(s)	676
StyD4I	CCNGG	4 cut(s)	676, 1048, 2254, 2577
StyI	CCWWGG	7 cut(s)	207, 1188, 1418, 1710, 2098, 2459, 2571
TaaI	ACNGT	6 cut(s)	486, 1225, 1729, 2414, 2444, 2490
TaiI	ACGT	5 cut(s)	135, 141, 1816, 2044, 2295
TatI	WGTACW	3 cut(s)	667, 682, 1299
TauI	GCSGC	2 cut(s)	99, 119
TfiI	GAWTC	8 cut(s)	75, 1715, 1894, 1997, 2080, 2088, 2094, 2120
Tru1I	TTAA	8 cut(s)	663, 755, 1116, 1253, 1631, 1680, 1802, 2016
Tru9I	TTAA	8 cut(s)	663, 755, 1116, 1253, 1631, 1680, 1802, 2016
TscAI	CASTG	5 cut(s)	489, 766, 1872, 2116, 2419
TseFI	GTSAC	2 cut(s)	2147, 2581
TseI	GCWGC	7 cut(s)	371, 599, 602, 689, 2377, 2468, 2471
Tsp45I	GTSAC	2 cut(s)	2147, 2581
TspGWI	ACGGA	2 cut(s)	260, 1875
TspRI	CASTG	5 cut(s)	489, 766, 1872, 2116, 2419
Van91I	CCANNNNNTGG	1 cut(s)	1049
Vha464I	CTTAAG	1 cut(s)	1801
VpaK11BI	GGWCC	4 cut(s)	404, 1883, 2372, 2602
XagI	CCTNNNNNAGG	1 cut(s)	2253
XapI	RAATTY	4 cut(s)	1112, 1304, 1310, 1673
XbaI	TCTAGA	2 cut(s)	1516, 2156
XceI	RCATGY	1 cut(s)	2508
XmaJI	CCTAGG	1 cut(s)	2459
XmiI	GTMKAC	5 cut(s)	135, 141, 274, 868, 1227
ZraI	GACGTC	3 cut(s)	133, 139, 2042
Zsp2I	ATGCAT	1 cut(s)	1183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.