Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009372

Physical Location & Seq

Genomic Coordinates Reverse (-)

9901620 .. 9904192

Gene Structure 2573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0074300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGATGAGCCACGACGAGCTTGCAGGATGTGGTTCCAAAGTCATCCTTACCACAAGAAGAATCCAAGTTTGTCATGCCATGGGGAGTCAAGTGAAGATCCCTCTCAACCTATTATCAGAAGATGACTCTTGGAACCTGTTTGTGAAGAATGCTAGAAAGTCTTTTGAGTCGACGAATTTCTGTGCGGTAGCAAAGCAAGTAACTAAAGAGTGTGGTGGCCTCCCAATTGCATTGATAGCAGTTGCAAGGGCACTTGGAGATAAAGACCAGCTGGAAGAATGGCAAGAAGCGGCGCGACGACTAGAGATTTCCCAACCTGCAAGTCTGGATGATGACGGACGCGTGCTCAAATGTATAAGGTTAAGTTATGATTACTTGAAAGGCAGGGATGCAAAATCATGCTTCTTGCTTTGTTGCCTCTTTCCGGAAGACTCTGATATCTCAATAAAGGACTTGATGAAGTATGGACTTGGGAAAGGGTTGTTTCGGGATGCTGGCACATTTGAAGAAGCCAGAAGCAGAGCGCATTCGGTGATCAACTACCTTATATCTTCCGACTTGCTTTTGGACAGTAAAGAGGATGAATGCGTAAGGATGCATGATGTCATTCGGGATATGGCCATGTCAATCGCATCATCTGAATGTGGTGATGGATTTTTGGTCAAAGCTGGGACTCAAATAACGGTTTGGCCAAATAATGCATGTGAAGGCTACTCTGCAATCTCTTTAATGAAAAACGATATTTGGAAGCTTCCTCAAGACTTGGTATGTCCAAAACTCCAGATTTTATTACTGCAATATAATAGAAGTATAAAGGAGATCCCAGAAACATTTTTTGGAAGTTTGAATGAGTTAAAGGTCTTAGATCTCAGTCACACTGGTATTTCGATCTTACCAGAGTCTTTGAGTCAGCGGACCAATCTCCACGCATTATATTTAGATTATTGCAAGTCAATAGGTAATGCATCTCTACTAGGAGAACTGAAGAAACTTGAAATTCTTAGCCTGAGACATTCAGCCCTTAAGGAATTACCTGAAGAGATAGGAAATTTGGCTAAGCTAAGAATGCTTGATCTTAGTTGGAGTGGGTCCATTAAGAGAATTCCATCCAATTTGATATCAAGGTTGTCTAGGTTAGAAGAACTATACATGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC1

Protein Analysis

385

Amino Acids

43.03

Weight (kDa)

6.05

Isoelectric Point (pI)

47.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	11 - 51	9.4e-07	NB-ARC domain
LRR_8	PF13855	258 - 316	6.7e-10	Leucine rich repeat
LRR_14	PF23598	262 - 382	5.3e-14	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71810
fragaria_vesca	FvH4_2g12660 FvH4_2g12660 FvH4_2g12660 FvH4_2g12660
malus_domestica	MD10G1042100.v1.1
prunus_persica	Prupe.8G046100_v2.0.a1 Prupe.8G046100_v2.0.a1 Prupe.8G046100_v2.0.a1 Prupe.8G046100_v2.0.a1
pyrus_communis	pycom10g02920
rosa_chinensis	RchiOBHm_Chr6g0273371
rosa_laevigata	RLG00000013622
rosa_multiflora	Rmu_sc0000239.1_g000003
rosa_roxburghii	Rroxscaffold_7G00195430
rosa_rugosa	Rorug06G0074300 Rorug06G0074400
rosa_samantha	Rh6AG189500 Rh6BG192900 Rh6CG192700 Rh6DG184200
rosa_wichuraiana	Rw6G016490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	325
AccI	GTMKAC	1 cut(s)	170
AccII	CGCG	2 cut(s)	295, 342
AccIII	TCCGGA	1 cut(s)	424
AciI	CCGC	3 cut(s)	185, 290, 913
AclWI	GGATC	2 cut(s)	91, 814
AcoI	YGGCCR	2 cut(s)	618, 689
AcsI	RAATTY	4 cut(s)	175, 996, 1048, 1101
AcuI	CTGAAG	2 cut(s)	1004, 1056
AfiI	CCNNNNNNNGG	1 cut(s)	424
AflII	CTTAAG	1 cut(s)	1022
AflIII	ACRYGT	1 cut(s)	340
AgsI	TTSAA	4 cut(s)	379, 506, 847, 995
AjuI	GAANNNNNNNTTGG	2 cut(s)	819, 851
AluBI	AGCT	5 cut(s)	19, 271, 668, 751, 1060
AluI	AGCT	5 cut(s)	19, 271, 668, 751, 1060
Alw21I	GWGCWC	1 cut(s)	348
Alw26I	GTCTC	1 cut(s)	1003
AlwI	GGATC	2 cut(s)	91, 814
Aor13HI	TCCGGA	1 cut(s)	424
AoxI	GGCC	3 cut(s)	217, 618, 689
ApoI	RAATTY	4 cut(s)	175, 996, 1048, 1101
AspLEI	GCGC	2 cut(s)	295, 526
AspS9I	GGNCC	2 cut(s)	915, 1089
AsuHPI	GGTGA	2 cut(s)	544, 659
AvaII	GGWCC	2 cut(s)	915, 1089
BaeGI	GKGCMC	1 cut(s)	253
BalI	TGGCCA	2 cut(s)	620, 691
BbsI	GAAGAC	1 cut(s)	435
Bbv12I	GWGCWC	1 cut(s)	348
BccI	CCATC	2 cut(s)	644, 1114
BcgI	CGANNNNNNTGC	1 cut(s)	36
BclI	TGATCA	1 cut(s)	534
BcoDI	GTCTC	1 cut(s)	1003
BfaI	CTAG	4 cut(s)	153, 302, 974, 1131
BfrI	CTTAAG	1 cut(s)	1022
BfuAI	ACCTGC	1 cut(s)	325
BglII	AGATCT	1 cut(s)	865
BisI	GCNGC	1 cut(s)	291
BlpI	GCTNAGC	1 cut(s)	1056
BlsI	GCNGC	1 cut(s)	292
Bme18I	GGWCC	2 cut(s)	915, 1089
BmgT120I	GGNCC	2 cut(s)	915, 1089
BmiI	GGNNCC	3 cut(s)	34, 134, 1090
BmsI	GCATC	5 cut(s)	379, 481, 585, 641, 974
BpiI	GAAGAC	1 cut(s)	435
BpmI	CTGGAG	1 cut(s)	764
Bpu1102I	GCTNAGC	1 cut(s)	1056
BpuEI	CTTGAG	1 cut(s)	741
BsaJI	CCNNGG	1 cut(s)	78
BsaWI	WCCGGW	1 cut(s)	424
Bsc4I	CCNNNNNNNGG	1 cut(s)	424
Bse1I	ACTGG	1 cut(s)	883
BseAI	TCCGGA	1 cut(s)	424
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	8 cut(s)	32, 42, 334, 394, 496, 586, 600, 1106
BseLI	CCNNNNNNNGG	1 cut(s)	424
BseMII	CTCAG	2 cut(s)	883, 998
BseNI	ACTGG	1 cut(s)	883
BseSI	GKGCMC	1 cut(s)	253
BseYI	CCCAGC	1 cut(s)	668
Bsh1236I	CGCG	2 cut(s)	295, 342
BshFI	GGCC	3 cut(s)	219, 620, 691
BsiHKAI	GWGCWC	1 cut(s)	348
BsiSI	CCGG	1 cut(s)	425
BslFI	GGGAC	1 cut(s)	685
BslI	CCNNNNNNNGG	1 cut(s)	424
BsmAI	GTCTC	1 cut(s)	1003
BsmFI	GGGAC	1 cut(s)	685
BsmI	GAATGC	4 cut(s)	154, 526, 590, 1071
BsnI	GGCC	3 cut(s)	219, 620, 691
Bsp1286I	GDGCHC	2 cut(s)	253, 348
Bsp13I	TCCGGA	1 cut(s)	424
Bsp143I	GATC	6 cut(s)	96, 534, 819, 865, 888, 1072
Bsp1720I	GCTNAGC	1 cut(s)	1056
Bsp19I	CCATGG	1 cut(s)	78
BspACI	CCGC	3 cut(s)	185, 290, 913
BspANI	GGCC	3 cut(s)	219, 620, 691
BspCNI	CTCAG	2 cut(s)	882, 999
BspEI	TCCGGA	1 cut(s)	424
BspFNI	CGCG	2 cut(s)	295, 342
BspLI	GGNNCC	3 cut(s)	34, 134, 1090
BspMI	ACCTGC	1 cut(s)	325
BspPI	GGATC	2 cut(s)	91, 814
BspTI	CTTAAG	1 cut(s)	1022
BsrI	ACTGG	1 cut(s)	883
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	6 cut(s)	96, 534, 819, 865, 888, 1072
BssT1I	CCWWGG	1 cut(s)	78
Bst4CI	ACNGT	2 cut(s)	572, 685
Bst6I	CTCTTC	1 cut(s)	1032
BstAFI	CTTAAG	1 cut(s)	1022
BstC8I	GCNNGC	3 cut(s)	21, 344, 496
BstDEI	CTNAG	7 cut(s)	862, 869, 1001, 1007, 1056, 1061, 1076
BstDSI	CCRYGG	1 cut(s)	78
BstF5I	GGATG	8 cut(s)	32, 42, 334, 394, 496, 586, 600, 1106
BstFNI	CGCG	2 cut(s)	295, 342
BstHHI	GCGC	2 cut(s)	295, 526
BstKTI	GATC	6 cut(s)	99, 537, 822, 868, 891, 1075
BstMAI	GTCTC	1 cut(s)	1003
BstMBI	GATC	6 cut(s)	96, 534, 819, 865, 888, 1072
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 1066
BstNSI	RCATGY	1 cut(s)	705
BstSLI	GKGCMC	1 cut(s)	253
BstUI	CGCG	2 cut(s)	295, 342
BstV2I	GAAGAC	1 cut(s)	435
BstX2I	RGATCY	3 cut(s)	96, 819, 865
BstYI	RGATCY	3 cut(s)	96, 819, 865
BsuRI	GGCC	3 cut(s)	219, 620, 691
BtgI	CCRYGG	1 cut(s)	78
BtsCI	GGATG	8 cut(s)	32, 42, 334, 394, 496, 586, 600, 1106
BtsIMutI	CAGTG	1 cut(s)	876
BveI	ACCTGC	1 cut(s)	325
Cac8I	GCNNGC	3 cut(s)	21, 344, 496
CfoI	GCGC	2 cut(s)	295, 526
Cfr13I	GGNCC	2 cut(s)	915, 1089
CseI	GACGC	1 cut(s)	348
CviAII	CATG	7 cut(s)	74, 79, 399, 599, 622, 702, 1150
DdeI	CTNAG	7 cut(s)	862, 869, 1001, 1007, 1056, 1061, 1076
DpnI	GATC	6 cut(s)	98, 536, 821, 867, 890, 1074
DpnII	GATC	6 cut(s)	96, 534, 819, 865, 888, 1072
EaeI	YGGCCR	2 cut(s)	618, 689
Eam1104I	CTCTTC	1 cut(s)	1032
EarI	CTCTTC	1 cut(s)	1032
Eco130I	CCWWGG	1 cut(s)	78
Eco32I	GATATC	2 cut(s)	439, 1119
Eco47I	GGWCC	2 cut(s)	915, 1089
Eco57I	CTGAAG	2 cut(s)	1004, 1056
EcoRI	GAATTC	1 cut(s)	1101
EcoRV	GATATC	2 cut(s)	439, 1119
EcoT14I	CCWWGG	1 cut(s)	78
EcoT22I	ATGCAT	3 cut(s)	600, 703, 967
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	7 cut(s)	77, 82, 402, 602, 625, 705, 1153
FalI	AAGNNNNNCTT	2 cut(s)	30, 62
FaqI	GGGAC	1 cut(s)	685
FatI	CATG	7 cut(s)	73, 78, 398, 598, 621, 701, 1149
FbaI	TGATCA	1 cut(s)	534
FblI	GTMKAC	1 cut(s)	170
Fnu4HI	GCNGC	1 cut(s)	291
FokI	GGATG	8 cut(s)	29, 39, 341, 401, 503, 593, 607, 1093
Fsp4HI	GCNGC	1 cut(s)	291
FspBI	CTAG	4 cut(s)	153, 302, 974, 1131
GlaI	GCGC	2 cut(s)	294, 525
GluI	GCNGC	1 cut(s)	291
GsaI	CCCAGC	1 cut(s)	672
GsuI	CTGGAG	1 cut(s)	764
HaeIII	GGCC	3 cut(s)	219, 620, 691
HapII	CCGG	1 cut(s)	425
HgaI	GACGC	1 cut(s)	348
HhaI	GCGC	2 cut(s)	295, 526
Hin1II	CATG	7 cut(s)	77, 82, 402, 602, 625, 705, 1153
Hin6I	GCGC	2 cut(s)	293, 524
HinP1I	GCGC	2 cut(s)	293, 524
HincII	GTYRAC	1 cut(s)	171
HindII	GTYRAC	1 cut(s)	171
HindIII	AAGCTT	1 cut(s)	749
HinfI	GANTC	8 cut(s)	60, 85, 125, 167, 431, 673, 899, 907
HpaII	CCGG	1 cut(s)	425
HphI	GGTGA	2 cut(s)	544, 659
Hpy166II	GTNNAC	1 cut(s)	171
Hpy188I	TCNGA	4 cut(s)	118, 436, 556, 640
Hpy188III	TCNNGA	6 cut(s)	326, 425, 488, 611, 758, 781
Hpy8I	GTNNAC	1 cut(s)	171
Hpy99I	CGWCG	3 cut(s)	17, 175, 300
HpyAV	CCTTC	1 cut(s)	701
HpyCH4III	ACNGT	2 cut(s)	572, 685
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 1066
HpyF3I	CTNAG	7 cut(s)	862, 869, 1001, 1007, 1056, 1061, 1076
Hsp92II	CATG	7 cut(s)	77, 82, 402, 602, 625, 705, 1153
HspAI	GCGC	2 cut(s)	293, 524
Kpn2I	TCCGGA	1 cut(s)	424
Ksp22I	TGATCA	1 cut(s)	534
Kzo9I	GATC	6 cut(s)	96, 534, 819, 865, 888, 1072
LweI	GCATC	5 cut(s)	379, 481, 585, 641, 974
MaeI	CTAG	4 cut(s)	153, 302, 974, 1131
MaeIII	GTNAC	2 cut(s)	199, 872
MalI	GATC	6 cut(s)	98, 536, 821, 867, 890, 1074
MboI	GATC	6 cut(s)	96, 534, 819, 865, 888, 1072
MfeI	CAATTG	1 cut(s)	225
MflI	RGATCY	3 cut(s)	96, 819, 865
MhlI	GDGCHC	2 cut(s)	253, 348
MlsI	TGGCCA	2 cut(s)	620, 691
MluCI	AATT	7 cut(s)	175, 225, 996, 1028, 1048, 1101, 1111
MluI	ACGCGT	1 cut(s)	340
MluNI	TGGCCA	2 cut(s)	620, 691
MlyI	GAGTC	7 cut(s)	94, 119, 176, 425, 667, 908, 916
MmeI	TCCRAC	2 cut(s)	579, 1061
MnlI	CCTC	5 cut(s)	111, 230, 428, 571, 765
Mox20I	TGGCCA	2 cut(s)	620, 691
Mph1103I	ATGCAT	3 cut(s)	600, 703, 967
MroI	TCCGGA	1 cut(s)	424
MscI	TGGCCA	2 cut(s)	620, 691
MseI	TTAA	5 cut(s)	362, 728, 854, 1023, 1095
MslI	CAYNNNNRTG	1 cut(s)	640
Msp20I	TGGCCA	2 cut(s)	620, 691
MspA1I	CMGCKG	2 cut(s)	271, 913
MspCI	CTTAAG	1 cut(s)	1022
MspI	CCGG	1 cut(s)	425
MunI	CAATTG	1 cut(s)	225
Mva1269I	GAATGC	4 cut(s)	154, 526, 590, 1071
MvnI	CGCG	2 cut(s)	295, 342
MwoI	GCNNNNNNNGC	2 cut(s)	236, 1066
NcoI	CCATGG	1 cut(s)	78
NdeII	GATC	6 cut(s)	96, 534, 819, 865, 888, 1072
NlaIII	CATG	7 cut(s)	77, 82, 402, 602, 625, 705, 1153
NlaIV	GGNNCC	3 cut(s)	34, 134, 1090
NmuCI	GTSAC	1 cut(s)	872
NsiI	ATGCAT	3 cut(s)	600, 703, 967
NspI	RCATGY	1 cut(s)	705
PctI	GAATGC	4 cut(s)	154, 526, 590, 1071
PfeI	GAWTC	1 cut(s)	60
PkrI	GCNGC	1 cut(s)	292
PleI	GAGTC	7 cut(s)	93, 119, 175, 425, 667, 907, 915
PpsI	GAGTC	7 cut(s)	93, 119, 175, 425, 667, 907, 915
PspFI	CCCAGC	1 cut(s)	668
PspN4I	GGNNCC	3 cut(s)	34, 134, 1090
PspPI	GGNCC	2 cut(s)	915, 1089
PsuI	RGATCY	3 cut(s)	96, 819, 865
PvuII	CAGCTG	1 cut(s)	271
RseI	CAYNNNNRTG	1 cut(s)	640
SalI	GTCGAC	1 cut(s)	169
SaqAI	TTAA	5 cut(s)	362, 728, 854, 1023, 1095
SatI	GCNGC	1 cut(s)	291
Sau3AI	GATC	6 cut(s)	96, 534, 819, 865, 888, 1072
Sau96I	GGNCC	2 cut(s)	915, 1089
SchI	GAGTC	7 cut(s)	94, 119, 176, 425, 667, 908, 916
SduI	GDGCHC	2 cut(s)	253, 348
SfaNI	GCATC	5 cut(s)	379, 481, 585, 641, 974
SinI	GGWCC	2 cut(s)	915, 1089
SmiMI	CAYNNNNRTG	1 cut(s)	640
SmlI	CTYRAG	2 cut(s)	756, 1022
SmoI	CTYRAG	2 cut(s)	756, 1022
Sse9I	AATT	7 cut(s)	175, 225, 996, 1028, 1048, 1101, 1111
SsiI	CCGC	3 cut(s)	185, 290, 913
SspMI	CTAG	4 cut(s)	153, 302, 974, 1131
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	2 cut(s)	572, 685
TaqI	TCGA	2 cut(s)	170, 887
TasI	AATT	7 cut(s)	175, 225, 996, 1028, 1048, 1101, 1111
TauI	GCSGC	1 cut(s)	293
TfiI	GAWTC	1 cut(s)	60
Tru1I	TTAA	5 cut(s)	362, 728, 854, 1023, 1095
Tru9I	TTAA	5 cut(s)	362, 728, 854, 1023, 1095
TscAI	CASTG	1 cut(s)	883
TseFI	GTSAC	1 cut(s)	872
Tsp45I	GTSAC	1 cut(s)	872
TspDTI	ATGAA	3 cut(s)	473, 597, 746
TspGWI	ACGGA	1 cut(s)	351
TspRI	CASTG	1 cut(s)	883
Vha464I	CTTAAG	1 cut(s)	1022
VpaK11BI	GGWCC	2 cut(s)	915, 1089
XapI	RAATTY	4 cut(s)	175, 996, 1048, 1101
XceI	RCATGY	1 cut(s)	705
XmiI	GTMKAC	1 cut(s)	170
XspI	CTAG	4 cut(s)	153, 302, 974, 1131
Zsp2I	ATGCAT	3 cut(s)	600, 703, 967

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.