Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009372

Physical Location & Seq

Genomic Coordinates Reverse (-)

9904501 .. 9905031

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0074400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGGGGAGATTGTTTTGGGAGTTCTTAATCCCGTAATGCAACTTGGGGAGTGGATATGGACCCCTGTGAAGCTTAGGATGAGTTACATGGTTCATTACAAGAGAAACTTACAGTTTCTTGGCCGTCAATTTAGAAAGCTTGAGGCGAAGTGGAATGATCTTAAAGAATCTGTGGATAGTGCTGAAATGAGTGGAGACAAAATCAAGCATGAGGTTCGAGGATGGCTAACAGAAGCTGATAATGCCATGACAAATGTGAGAGAATTGAATGGTGAAGCTGGAGCAGGCGAAAAGTGCTTTATAGGATGGTGTCCAGATTTGAAATGGCGCTACAATTTGGGGAAGAAAGCATCGAAGCTGACAAAAACACTAAACAAGCTTGTAGAAGAGGCACAATTTGAGACTGTTTCACTTGAAATTCGACGACCACCTGAAGTTCAGGACTTAATCTTCACTGAAGGATTTGAAGCATTTGAAGCAACTAGACAATTAAGCCATGGAGAGAGTCATGAATGCACTGAAGAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC1

Protein Analysis

176

Amino Acids

20.38

Weight (kDa)

5.89

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71810
fragaria_vesca	FvH4_2g12660 FvH4_2g12660 FvH4_2g12660 FvH4_2g12660
malus_domestica	MD10G1042100.v1.1
prunus_persica	Prupe.8G046100_v2.0.a1 Prupe.8G046100_v2.0.a1 Prupe.8G046100_v2.0.a1 Prupe.8G046100_v2.0.a1
pyrus_communis	pycom10g02920
rosa_chinensis	RchiOBHm_Chr6g0273371
rosa_laevigata	RLG00000013622
rosa_multiflora	Rmu_sc0000239.1_g000003
rosa_roxburghii	Rroxscaffold_7G00195430
rosa_rugosa	Rorug06G0074300 Rorug06G0074400
rosa_samantha	Rh6AG189500 Rh6BG192900 Rh6CG192700 Rh6DG184200
rosa_wichuraiana	Rw6G016490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	121
AcsI	RAATTY	1 cut(s)	417
AcuI	CTGAAG	2 cut(s)	453, 477
AgsI	TTSAA	5 cut(s)	268, 322, 416, 467, 476
AluBI	AGCT	6 cut(s)	73, 139, 236, 278, 358, 379
AluI	AGCT	6 cut(s)	73, 139, 236, 278, 358, 379
Alw26I	GTCTC	2 cut(s)	189, 395
AlwNI	CAGNNNCTG	1 cut(s)	236
AoxI	GGCC	1 cut(s)	121
ApoI	RAATTY	1 cut(s)	417
AspLEI	GCGC	1 cut(s)	330
AspS9I	GGNCC	1 cut(s)	60
AsuHPI	GGTGA	1 cut(s)	284
AvaII	GGWCC	1 cut(s)	60
BccI	CCATC	2 cut(s)	216, 300
BceAI	ACGGC	1 cut(s)	108
BcgI	CGANNNNNNTGC	2 cut(s)	197, 231
BcoDI	GTCTC	2 cut(s)	189, 395
BfaI	CTAG	1 cut(s)	483
BfoI	RGCGCY	1 cut(s)	331
Bme18I	GGWCC	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	60
BmiI	GGNNCC	1 cut(s)	62
BmsI	GCATC	1 cut(s)	359
BpmI	CTGGAG	1 cut(s)	300
Bpu10I	CCTNAGC	1 cut(s)	74
BpuEI	CTTGAG	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	496
BseDI	CCNNGG	1 cut(s)	496
BseGI	GGATG	3 cut(s)	84, 227, 311
BshFI	GGCC	1 cut(s)	123
BsmAI	GTCTC	2 cut(s)	189, 395
BsmI	GAATGC	1 cut(s)	518
BsnI	GGCC	1 cut(s)	123
Bsp143I	GATC	1 cut(s)	157
Bsp19I	CCATGG	1 cut(s)	496
BspANI	GGCC	1 cut(s)	123
BspHI	TCATGA	1 cut(s)	508
BspLI	GGNNCC	1 cut(s)	62
BssECI	CCNNGG	1 cut(s)	496
BssMI	GATC	1 cut(s)	157
BssT1I	CCWWGG	1 cut(s)	496
Bst4CI	ACNGT	2 cut(s)	114, 406
Bst6I	CTCTTC	1 cut(s)	381
BstC8I	GCNNGC	1 cut(s)	286
BstDEI	CTNAG	1 cut(s)	74
BstDSI	CCRYGG	1 cut(s)	496
BstF5I	GGATG	3 cut(s)	84, 227, 311
BstH2I	RGCGCY	1 cut(s)	331
BstHHI	GCGC	1 cut(s)	330
BstKTI	GATC	1 cut(s)	160
BstMAI	GTCTC	2 cut(s)	189, 395
BstMBI	GATC	1 cut(s)	157
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 294, 476
BsuRI	GGCC	1 cut(s)	123
BtgI	CCRYGG	1 cut(s)	496
BtsCI	GGATG	3 cut(s)	84, 227, 311
BtsIMutI	CAGTG	2 cut(s)	453, 516
Cac8I	GCNNGC	1 cut(s)	286
CaiI	CAGNNNCTG	1 cut(s)	236
CciI	TCATGA	1 cut(s)	508
CfoI	GCGC	1 cut(s)	330
Cfr13I	GGNCC	1 cut(s)	60
CviAII	CATG	5 cut(s)	88, 209, 247, 497, 509
CviJI	RGCY	9 cut(s)	73, 123, 139, 226, 236, 278, 358, 379, 495
CviKI_1	RGCY	9 cut(s)	73, 123, 139, 226, 236, 278, 358, 379, 495
DdeI	CTNAG	1 cut(s)	74
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
EaeI	YGGCCR	1 cut(s)	121
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
Eco130I	CCWWGG	1 cut(s)	496
Eco47I	GGWCC	1 cut(s)	60
Eco57I	CTGAAG	2 cut(s)	453, 477
EcoT14I	CCWWGG	1 cut(s)	496
ErhI	CCWWGG	1 cut(s)	496
FaeI	CATG	5 cut(s)	91, 212, 250, 500, 512
FaiI	YATR	7 cut(s)	58, 89, 210, 248, 302, 498, 510
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FatI	CATG	5 cut(s)	87, 208, 246, 496, 508
FokI	GGATG	3 cut(s)	91, 234, 318
FspBI	CTAG	1 cut(s)	483
GlaI	GCGC	1 cut(s)	329
GsuI	CTGGAG	1 cut(s)	300
HaeII	RGCGCY	1 cut(s)	331
HaeIII	GGCC	1 cut(s)	123
HhaI	GCGC	1 cut(s)	330
Hin1II	CATG	5 cut(s)	91, 212, 250, 500, 512
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HindIII	AAGCTT	3 cut(s)	71, 137, 377
HinfI	GANTC	2 cut(s)	167, 505
HphI	GGTGA	1 cut(s)	284
Hpy188III	TCNNGA	3 cut(s)	314, 440, 509
Hpy99I	CGWCG	1 cut(s)	426
HpyAV	CCTTC	1 cut(s)	452
HpyCH4III	ACNGT	2 cut(s)	114, 406
HpyCH4V	TGCA	2 cut(s)	40, 516
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 294, 476
HpyF3I	CTNAG	1 cut(s)	74
Hsp92II	CATG	5 cut(s)	91, 212, 250, 500, 512
HspAI	GCGC	1 cut(s)	328
Kzo9I	GATC	1 cut(s)	157
LmnI	GCTCC	1 cut(s)	281
LpnPI	CCDG	6 cut(s)	78, 264, 270, 327, 425, 444
LweI	GCATC	1 cut(s)	359
MaeI	CTAG	1 cut(s)	483
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	3 cut(s)	355, 398, 442
MluCI	AATT	6 cut(s)	128, 263, 334, 395, 417, 488
MlyI	GAGTC	1 cut(s)	514
MnlI	CCTC	4 cut(s)	136, 205, 212, 382
MseI	TTAA	4 cut(s)	27, 162, 446, 491
Mva1269I	GAATGC	1 cut(s)	518
MwoI	GCNNNNNNNGC	3 cut(s)	242, 294, 476
NcoI	CCATGG	1 cut(s)	496
NdeII	GATC	1 cut(s)	157
NlaIII	CATG	5 cut(s)	91, 212, 250, 500, 512
NlaIV	GGNNCC	1 cut(s)	62
PagI	TCATGA	1 cut(s)	508
PctI	GAATGC	1 cut(s)	518
PfeI	GAWTC	1 cut(s)	167
PleI	GAGTC	1 cut(s)	513
PpsI	GAGTC	1 cut(s)	513
PspN4I	GGNNCC	1 cut(s)	62
PspPI	GGNCC	1 cut(s)	60
PstNI	CAGNNNCTG	1 cut(s)	236
SaqAI	TTAA	4 cut(s)	27, 162, 446, 491
Sau3AI	GATC	1 cut(s)	157
Sau96I	GGNCC	1 cut(s)	60
SchI	GAGTC	1 cut(s)	514
SetI	ASST	8 cut(s)	75, 141, 216, 238, 280, 360, 381, 433
SfaNI	GCATC	1 cut(s)	359
SinI	GGWCC	1 cut(s)	60
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	6 cut(s)	128, 263, 334, 395, 417, 488
SspMI	CTAG	1 cut(s)	483
StyI	CCWWGG	1 cut(s)	496
TaaI	ACNGT	2 cut(s)	114, 406
TaqI	TCGA	3 cut(s)	217, 353, 421
TasI	AATT	6 cut(s)	128, 263, 334, 395, 417, 488
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	4 cut(s)	27, 162, 446, 491
Tru9I	TTAA	4 cut(s)	27, 162, 446, 491
TscAI	CASTG	2 cut(s)	460, 523
TspDTI	ATGAA	2 cut(s)	83, 525
TspRI	CASTG	2 cut(s)	460, 523
VpaK11BI	GGWCC	1 cut(s)	60
XapI	RAATTY	1 cut(s)	417
XcmI	CCANNNNNNNNNTGG	1 cut(s)	321
XspI	CTAG	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.