RLG00000014123

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0018188
Physical Location & Seq
Reverse (-)
47746692 .. 47747785
1094 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014123

Sequence Viewer

Length: 627 bp
ATGTGTATCCAAACAGTGGCTCTCACATTTCCAACCCCCACTTTATGGCCACTCACACCACCTGGCATAGCGGCCGCAACATTCCCTTCCCCCTCTGGGTTTCTCTTGAACAGAATGTACCTCCCCACTCCAGAATTTCAATATATTCCTCTCAAACATCTCAACTCCAATGGCCCTCCCTATCTGAGCTATCTCGGTGCCCACGACAGCAAGATCCTACAATCCTGTAATGGCTTGCTTCTCTGCGCGCGGTACTTCTCTTGGTACTTCTCCAACTGGTGTATCAGGCGCACAATTCACTGGTATAGTGAGGAAGAGACTTCACTCTACTTCAATGTGGATGAGGACAGCCTTAAGACTATGTCAATGCCAGACCATGAGGATGATTTTAAGCCAGTCAGATATTTTGGGGAGTCTCGAGGCCATCTACATGTGATAATGTTCGAAAAGAATGCTGTTCAGTTTGATGTGTTGGAGATGGAGGAAGATTACAGTGCATGGAAGAGGACTGAAAATAGTCCTCAACGTCTTCGGTATGGTTGTGGCCGGCCTACAACTTCAGTGATGGGACATACAACCTCATTCGGTATCTGGTTCCATGTCAAGAAGTTGCTGCTTATGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

209

Amino Acids

24.12

Weight (kDa)

6.44

Isoelectric Point (pI)

46.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018188)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0396941
rosa_laevigata RLG00000014123
rosa_roxburghii Rroxscaffold_5G00341930
rosa_rugosa Rorug06G0022800
rosa_samantha Rh4AG111700 Rh4AG111800 Rh4BG072000 Rh4DG069400 Rh6BG144400 Rh6DG128800
rosa_wichuraiana Rw4G006060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 197
AccB7I CCANNNNNTGG 2 cut(s) 16, 45
AccII CGCG 2 cut(s) 248, 250
AciI CCGC 3 cut(s) 71, 75, 250
AclWI GGATC 1 cut(s) 208
AcoI YGGCCR 3 cut(s) 47, 72, 544
AcsI RAATTY 1 cut(s) 134
AcuI CTGAAG 1 cut(s) 543
AfaI GTAC 3 cut(s) 119, 254, 266
AfiI CCNNNNNNNGG 3 cut(s) 16, 45, 96
AflII CTTAAG 1 cut(s) 353
AflIII ACRYGT 1 cut(s) 430
AgsI TTSAA 3 cut(s) 109, 140, 334
AjnI CCWGG 1 cut(s) 61
AluBI AGCT 1 cut(s) 189
AluI AGCT 1 cut(s) 189
Alw26I GTCTC 2 cut(s) 311, 420
AlwI GGATC 1 cut(s) 208
Ama87I CYCGRG 1 cut(s) 417
AoxI GGCC 6 cut(s) 47, 72, 172, 421, 544, 548
ApeKI GCWGC 1 cut(s) 613
ApoI RAATTY 1 cut(s) 134
AspLEI GCGC 3 cut(s) 248, 250, 291
AspS9I GGNCC 1 cut(s) 173
AsuII TTCGAA 1 cut(s) 444
AvaI CYCGRG 1 cut(s) 417
BaeGI GKGCMC 1 cut(s) 202
BaeI ACNNNNGTAYC 2 cut(s) 265, 298
BalI TGGCCA 1 cut(s) 49
BanI GGYRCC 1 cut(s) 197
BbsI GAAGAC 1 cut(s) 521
BbvI GCAGC 1 cut(s) 600
BccI CCATC 3 cut(s) 432, 472, 559
BcgI CGANNNNNNTGC 2 cut(s) 434, 468
BciT130I CCWGG 1 cut(s) 63
BciVI GTATCC 1 cut(s) 17
BcoDI GTCTC 2 cut(s) 311, 420
BfrI CTTAAG 1 cut(s) 353
BfuI GTATCC 1 cut(s) 17
BisI GCNGC 3 cut(s) 72, 75, 614
BlsI GCNGC 3 cut(s) 73, 76, 615
Bme1390I CCNGG 1 cut(s) 63
BmeT110I CYCGRG 1 cut(s) 417
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 2 cut(s) 199, 596
BmrFI CCNGG 1 cut(s) 63
BpiI GAAGAC 1 cut(s) 521
BpmI CTGGAG 1 cut(s) 114
Bpu14I TTCGAA 1 cut(s) 444
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 45, 96
Bse118I RCCGGY 1 cut(s) 546
Bse1I ACTGG 3 cut(s) 281, 305, 395
BseBI CCWGG 1 cut(s) 63
BseGI GGATG 2 cut(s) 346, 388
BseLI CCNNNNNNNGG 3 cut(s) 16, 45, 96
BseMII CTCAG 1 cut(s) 176
BseNI ACTGG 3 cut(s) 281, 305, 395
BsePI GCGCGC 1 cut(s) 246
BseSI GKGCMC 1 cut(s) 202
BseX3I CGGCCG 1 cut(s) 72
BseXI GCAGC 1 cut(s) 600
Bsh1236I CGCG 2 cut(s) 248, 250
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 6 cut(s) 49, 74, 174, 423, 546, 550
BshNI GGYRCC 1 cut(s) 197
BsiEI CGRYCG 1 cut(s) 75
BsiHKCI CYCGRG 1 cut(s) 417
BsiSI CCGG 1 cut(s) 547
BslFI GGGAC 1 cut(s) 582
BslI CCNNNNNNNGG 3 cut(s) 16, 45, 96
BsmAI GTCTC 2 cut(s) 311, 420
BsmFI GGGAC 1 cut(s) 582
BsmI GAATGC 1 cut(s) 457
BsnI GGCC 6 cut(s) 49, 74, 174, 423, 546, 550
BsoBI CYCGRG 1 cut(s) 417
Bsp119I TTCGAA 1 cut(s) 444
Bsp1286I GDGCHC 1 cut(s) 202
Bsp143I GATC 1 cut(s) 213
BspACI CCGC 3 cut(s) 71, 75, 250
BspANI GGCC 6 cut(s) 49, 74, 174, 423, 546, 550
BspCNI CTCAG 1 cut(s) 177
BspFNI CGCG 2 cut(s) 248, 250
BspLI GGNNCC 2 cut(s) 199, 596
BspPI GGATC 1 cut(s) 208
BspT104I TTCGAA 1 cut(s) 444
BspT107I GGYRCC 1 cut(s) 197
BspTI CTTAAG 1 cut(s) 353
BsrFI RCCGGY 1 cut(s) 546
BsrI ACTGG 3 cut(s) 281, 305, 395
BssAI RCCGGY 1 cut(s) 546
BssHII GCGCGC 1 cut(s) 246
BssMI GATC 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 63
Bst4CI ACNGT 2 cut(s) 16, 494
Bst6I CTCTTC 2 cut(s) 309, 497
BstAFI CTTAAG 1 cut(s) 353
BstBI TTCGAA 1 cut(s) 444
BstC8I GCNNGC 3 cut(s) 236, 248, 548
BstDEI CTNAG 1 cut(s) 185
BstF5I GGATG 2 cut(s) 346, 388
BstFNI CGCG 2 cut(s) 248, 250
BstHHI GCGC 3 cut(s) 248, 250, 291
BstKTI GATC 1 cut(s) 216
BstMAI GTCTC 2 cut(s) 311, 420
BstMBI GATC 1 cut(s) 213
BstMCI CGRYCG 1 cut(s) 75
BstNI CCWGG 1 cut(s) 63
BstNSI RCATGY 1 cut(s) 434
BstSCI CCNGG 1 cut(s) 61
BstSLI GKGCMC 1 cut(s) 202
BstUI CGCG 2 cut(s) 248, 250
BstV1I GCAGC 1 cut(s) 600
BstV2I GAAGAC 1 cut(s) 521
BstX2I RGATCY 1 cut(s) 213
BstYI RGATCY 1 cut(s) 213
BstZI CGGCCG 1 cut(s) 72
BsuI GTATCC 1 cut(s) 17
BsuRI GGCC 6 cut(s) 49, 74, 174, 423, 546, 550
BtsCI GGATG 2 cut(s) 346, 388
BtsIMutI CAGTG 4 cut(s) 21, 298, 499, 567
Cac8I GCNNGC 3 cut(s) 236, 248, 548
CciNI GCGGCCGC 1 cut(s) 72
CfoI GCGC 3 cut(s) 248, 250, 291
Cfr10I RCCGGY 1 cut(s) 546
Cfr13I GGNCC 1 cut(s) 173
Csp6I GTAC 3 cut(s) 118, 253, 265
CviAII CATG 4 cut(s) 377, 431, 498, 599
CviQI GTAC 3 cut(s) 118, 253, 265
DdeI CTNAG 1 cut(s) 185
DpnI GATC 1 cut(s) 215
DpnII GATC 1 cut(s) 213
EaeI YGGCCR 3 cut(s) 47, 72, 544
EagI CGGCCG 1 cut(s) 72
Eam1104I CTCTTC 2 cut(s) 309, 497
EarI CTCTTC 2 cut(s) 309, 497
EclXI CGGCCG 1 cut(s) 72
Eco52I CGGCCG 1 cut(s) 72
Eco57I CTGAAG 1 cut(s) 543
Eco88I CYCGRG 1 cut(s) 417
EcoRII CCWGG 1 cut(s) 61
FaeI CATG 4 cut(s) 380, 434, 501, 602
FaqI GGGAC 1 cut(s) 582
FatI CATG 4 cut(s) 376, 430, 497, 598
Fnu4HI GCNGC 3 cut(s) 72, 75, 614
FokI GGATG 2 cut(s) 353, 395
FseI GGCCGGCC 1 cut(s) 550
Fsp4HI GCNGC 3 cut(s) 72, 75, 614
GlaI GCGC 3 cut(s) 247, 249, 290
GluI GCNGC 3 cut(s) 72, 75, 614
GsuI CTGGAG 1 cut(s) 114
HaeIII GGCC 6 cut(s) 49, 74, 174, 423, 546, 550
HapII CCGG 1 cut(s) 547
HhaI GCGC 3 cut(s) 248, 250, 291
Hin1II CATG 4 cut(s) 380, 434, 501, 602
Hin6I GCGC 3 cut(s) 246, 248, 289
HinP1I GCGC 3 cut(s) 246, 248, 289
HinfI GANTC 1 cut(s) 413
HpaII CCGG 1 cut(s) 547
Hpy188I TCNGA 2 cut(s) 186, 401
Hpy188III TCNNGA 4 cut(s) 106, 131, 417, 604
HpyAV CCTTC 1 cut(s) 96
HpyCH4III ACNGT 2 cut(s) 16, 494
HpyCH4IV ACGT 1 cut(s) 526
HpyCH4V TGCA 1 cut(s) 497
HpyF3I CTNAG 1 cut(s) 185
HpySE526I ACGT 1 cut(s) 526
Hsp92II CATG 4 cut(s) 380, 434, 501, 602
HspAI GCGC 3 cut(s) 246, 248, 289
KroI GCCGGC 1 cut(s) 546
KroNI GCCGGC 1 cut(s) 548
Kzo9I GATC 1 cut(s) 213
Lsp1109I GCAGC 1 cut(s) 600
MaeII ACGT 1 cut(s) 526
MalI GATC 1 cut(s) 215
MboI GATC 1 cut(s) 213
MboII GAAGA 4 cut(s) 326, 497, 514, 521
MflI RGATCY 1 cut(s) 213
MhlI GDGCHC 1 cut(s) 202
MlsI TGGCCA 1 cut(s) 49
MluCI AATT 2 cut(s) 134, 294
MluNI TGGCCA 1 cut(s) 49
MlyI GAGTC 1 cut(s) 422
MmeI TCCRAC 3 cut(s) 56, 297, 453
Mox20I TGGCCA 1 cut(s) 49
MroNI GCCGGC 1 cut(s) 546
MscI TGGCCA 1 cut(s) 49
MseI TTAA 2 cut(s) 354, 390
MslI CAYNNNNRTG 2 cut(s) 381, 429
Msp20I TGGCCA 1 cut(s) 49
MspCI CTTAAG 1 cut(s) 353
MspI CCGG 1 cut(s) 547
MspR9I CCNGG 1 cut(s) 63
Mva1269I GAATGC 1 cut(s) 457
MvaI CCWGG 1 cut(s) 63
MvnI CGCG 2 cut(s) 248, 250
NaeI GCCGGC 1 cut(s) 548
NdeII GATC 1 cut(s) 213
NgoMIV GCCGGC 1 cut(s) 546
NlaIII CATG 4 cut(s) 380, 434, 501, 602
NlaIV GGNNCC 2 cut(s) 199, 596
NotI GCGGCCGC 1 cut(s) 72
NspI RCATGY 1 cut(s) 434
NspV TTCGAA 1 cut(s) 444
PaeR7I CTCGAG 1 cut(s) 417
PauI GCGCGC 1 cut(s) 246
PciI ACATGT 1 cut(s) 430
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PctI GAATGC 1 cut(s) 457
PdiI GCCGGC 1 cut(s) 548
PflFI GACNNNGTC 1 cut(s) 361
PflMI CCANNNNNTGG 2 cut(s) 16, 45
PkrI GCNGC 3 cut(s) 73, 76, 615
PleI GAGTC 1 cut(s) 421
PpsI GAGTC 1 cut(s) 421
PscI ACATGT 1 cut(s) 430
Psp6I CCWGG 1 cut(s) 61
PspGI CCWGG 1 cut(s) 61
PspN4I GGNNCC 2 cut(s) 199, 596
PspPI GGNCC 1 cut(s) 173
PsrI GAACNNNNNNTAC 2 cut(s) 101, 133
PsuI RGATCY 1 cut(s) 213
PsyI GACNNNGTC 1 cut(s) 361
PteI GCGCGC 1 cut(s) 246
RigI GGCCGGCC 1 cut(s) 550
RsaI GTAC 3 cut(s) 119, 254, 266
RsaNI GTAC 3 cut(s) 118, 253, 265
RseI CAYNNNNRTG 2 cut(s) 381, 429
SaqAI TTAA 2 cut(s) 354, 390
SatI GCNGC 3 cut(s) 72, 75, 614
Sau3AI GATC 1 cut(s) 213
Sau96I GGNCC 1 cut(s) 173
SchI GAGTC 1 cut(s) 422
ScrFI CCNGG 1 cut(s) 63
SduI GDGCHC 1 cut(s) 202
SetI ASST 5 cut(s) 64, 123, 191, 529, 581
Sfr274I CTCGAG 1 cut(s) 417
SfuI TTCGAA 1 cut(s) 444
SlaI CTCGAG 1 cut(s) 417
SmiMI CAYNNNNRTG 2 cut(s) 381, 429
SmlI CTYRAG 2 cut(s) 353, 417
SmoI CTYRAG 2 cut(s) 353, 417
Sse9I AATT 2 cut(s) 134, 294
SsiI CCGC 3 cut(s) 71, 75, 250
StyD4I CCNGG 1 cut(s) 61
TaaI ACNGT 2 cut(s) 16, 494
TaiI ACGT 1 cut(s) 529
TaqI TCGA 2 cut(s) 418, 444
TasI AATT 2 cut(s) 134, 294
TauI GCSGC 2 cut(s) 74, 77
Tru1I TTAA 2 cut(s) 354, 390
Tru9I TTAA 2 cut(s) 354, 390
TscAI CASTG 4 cut(s) 21, 305, 499, 567
TseI GCWGC 1 cut(s) 613
TspRI CASTG 4 cut(s) 21, 305, 499, 567
Tth111I GACNNNGTC 1 cut(s) 361
Van91I CCANNNNNTGG 2 cut(s) 16, 45
Vha464I CTTAAG 1 cut(s) 353
XapI RAATTY 1 cut(s) 134
XceI RCATGY 1 cut(s) 434
XhoI CTCGAG 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.