Rw4G006060

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0018188
Physical Location & Seq
Forward (+)
12252929 .. 12256280
3352 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G006060.1

Sequence Viewer

Length: 807 bp
ATGCCTCCATATCTGACCTATCCTGGTGCCCCAAAAATCAAGGTCTTACAATCCTGCAATGGGTTGCTTCTATGTTCTGAACCTCCTAATTCTAGATTCGTCCAACGTTTCTATGTCTGCAATCCCACCACTACAAAGTTCAAGATCATTCATTATCCTTATCCTTATCCGTTCAGGCACGCGCCATATGTTGTTGTTTTCAGGCGAGCAATTCACTGGTATAGTTATGAACAGACCTCCATTTCCTTTGATGTGGACAAAGAGTGCTTCAACTCGATGCCTATGCCTCATTCATTGAACAATGGCATTATCCATTATTTGGGAAACGCATTAACCTCTTTTGAAGAGTTTGATGTCTGGGAATTGGATGAAAAATACTCTCAGCGGTCTTTCACATACCATATGAATCTTGATTACTTGAGAGCTGCATTTTGTGGTAGGTATCAGATTCCCAGCCATAGGTTTGAGGCCTGGATTTTGAGTGTTGTTCCTGGTGCAAACAAAGAGGTGCCAGAAGTTATGTTGCTGGTGTTTGTGTTTTCTCAATGTTCATTCATGGTCCCCACTCCCCAGTATGCTTGGCTTAAAAGGTGTTCTTTATCGAGTAGACCACACAGTGAGTTCAGGATGAATGCAGGAGACAGAAAATGTAAGCACTATTTTTATCAATATGGACGTGATATTGTTTTTCTTGGTCATCCAAAGGCAACAGACAGCAAGTGTGGACCGGAGTTAGAGAAAGTGGCTTTCGGGGTGGAATACTTAAGTTTTTTACCCTTTGGAGACTGTAAAACGCCAAGTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

268

Amino Acids

31.23

Weight (kDa)

8.59

Isoelectric Point (pI)

53.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018188)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0396941
rosa_laevigata RLG00000014123
rosa_roxburghii Rroxscaffold_5G00341930
rosa_rugosa Rorug06G0022800
rosa_samantha Rh4AG111700 Rh4AG111800 Rh4BG072000 Rh4DG069400 Rh6BG144400 Rh6DG128800
rosa_wichuraiana Rw4G006060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 26, 508
AccB7I CCANNNNNTGG 1 cut(s) 319
AccI GTMKAC 1 cut(s) 607
AccII CGCG 1 cut(s) 182
AciI CCGC 1 cut(s) 385
AclI AACGTT 1 cut(s) 106
AdeI CACNNNGTG 1 cut(s) 617
AfiI CCNNNNNNNGG 3 cut(s) 60, 319, 459
AflII CTTAAG 1 cut(s) 763
AgsI TTSAA 4 cut(s) 142, 271, 298, 344
AjiI CACGTC 1 cut(s) 677
AjnI CCWGG 3 cut(s) 22, 470, 490
AluBI AGCT 1 cut(s) 425
AluI AGCT 1 cut(s) 425
Alw26I GTCTC 2 cut(s) 633, 777
AoxI GGCC 1 cut(s) 468
ApeKI GCWGC 1 cut(s) 425
AspLEI GCGC 1 cut(s) 184
AspS9I GGNCC 2 cut(s) 559, 725
AvaII GGWCC 2 cut(s) 559, 725
BaeGI GKGCMC 1 cut(s) 31
BanI GGYRCC 2 cut(s) 26, 508
BbvI GCAGC 1 cut(s) 412
BcgI CGANNNNNNTGC 2 cut(s) 265, 299
BciT130I CCWGG 3 cut(s) 24, 472, 492
BcoDI GTCTC 2 cut(s) 633, 777
BfaI CTAG 1 cut(s) 93
BfrI CTTAAG 1 cut(s) 763
BisI GCNGC 1 cut(s) 426
BlsI GCNGC 1 cut(s) 427
Bme1390I CCNGG 3 cut(s) 24, 472, 492
Bme18I GGWCC 2 cut(s) 559, 725
BmgBI CACGTC 1 cut(s) 677
BmgT120I GGNCC 2 cut(s) 559, 725
BmiI GGNNCC 3 cut(s) 28, 510, 561
BmrFI CCNGG 3 cut(s) 24, 472, 492
BmrI ACTGGG 1 cut(s) 565
BmsI GCATC 1 cut(s) 267
BmuI ACTGGG 1 cut(s) 565
BpuEI CTTGAG 1 cut(s) 439
BsaWI WCCGGW 1 cut(s) 727
Bsc4I CCNNNNNNNGG 3 cut(s) 60, 319, 459
Bse1I ACTGG 2 cut(s) 221, 571
Bse3DI GCAATG 1 cut(s) 64
BseBI CCWGG 3 cut(s) 24, 472, 492
BseGI GGATG 3 cut(s) 373, 633, 697
BseLI CCNNNNNNNGG 3 cut(s) 60, 319, 459
BseMI GCAATG 1 cut(s) 64
BseMII CTCAG 1 cut(s) 395
BseNI ACTGG 2 cut(s) 221, 571
BseSI GKGCMC 1 cut(s) 31
BseXI GCAGC 1 cut(s) 412
BseYI CCCAGC 1 cut(s) 452
Bsh1236I CGCG 1 cut(s) 182
BshFI GGCC 1 cut(s) 470
BshNI GGYRCC 2 cut(s) 26, 508
BsiSI CCGG 1 cut(s) 728
BslFI GGGAC 1 cut(s) 545
BslI CCNNNNNNNGG 3 cut(s) 60, 319, 459
BsmAI GTCTC 2 cut(s) 633, 777
BsmFI GGGAC 1 cut(s) 545
BsmI GAATGC 1 cut(s) 637
BsnI GGCC 1 cut(s) 470
Bsp1286I GDGCHC 1 cut(s) 31
Bsp143I GATC 1 cut(s) 144
BspACI CCGC 1 cut(s) 385
BspANI GGCC 1 cut(s) 470
BspCNI CTCAG 1 cut(s) 394
BspFNI CGCG 1 cut(s) 182
BspLI GGNNCC 3 cut(s) 28, 510, 561
BspT107I GGYRCC 2 cut(s) 26, 508
BspTI CTTAAG 1 cut(s) 763
BsrDI GCAATG 1 cut(s) 64
BsrI ACTGG 2 cut(s) 221, 571
BssMI GATC 1 cut(s) 144
Bst2UI CCWGG 3 cut(s) 24, 472, 492
Bst4CI ACNGT 2 cut(s) 617, 788
Bst6I CTCTTC 1 cut(s) 339
BstAFI CTTAAG 1 cut(s) 763
BstC8I GCNNGC 2 cut(s) 180, 207
BstDEI CTNAG 1 cut(s) 381
BstF5I GGATG 3 cut(s) 373, 633, 697
BstFNI CGCG 1 cut(s) 182
BstHHI GCGC 1 cut(s) 184
BstKTI GATC 1 cut(s) 147
BstMAI GTCTC 2 cut(s) 633, 777
BstMBI GATC 1 cut(s) 144
BstNI CCWGG 3 cut(s) 24, 472, 492
BstSCI CCNGG 3 cut(s) 22, 470, 490
BstSLI GKGCMC 1 cut(s) 31
BstUI CGCG 1 cut(s) 182
BstV1I GCAGC 1 cut(s) 412
BsuRI GGCC 1 cut(s) 470
BtrI CACGTC 1 cut(s) 677
BtsCI GGATG 3 cut(s) 373, 633, 697
BtsIMutI CAGTG 2 cut(s) 214, 622
Cac8I GCNNGC 2 cut(s) 180, 207
CfoI GCGC 1 cut(s) 184
Cfr13I GGNCC 2 cut(s) 559, 725
CviAII CATG 1 cut(s) 556
CviJI RGCY 5 cut(s) 425, 456, 470, 583, 746
CviKI_1 RGCY 5 cut(s) 425, 456, 470, 583, 746
DdeI CTNAG 1 cut(s) 381
DpnI GATC 1 cut(s) 146
DpnII GATC 1 cut(s) 144
DraIII CACNNNGTG 1 cut(s) 617
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Eco147I AGGCCT 1 cut(s) 470
Eco47I GGWCC 2 cut(s) 559, 725
EcoRII CCWGG 3 cut(s) 22, 470, 490
FaeI CATG 1 cut(s) 559
FalI AAGNNNNNCTT 2 cut(s) 580, 612
FaqI GGGAC 1 cut(s) 545
FatI CATG 1 cut(s) 555
FauNDI CATATG 2 cut(s) 187, 402
FblI GTMKAC 1 cut(s) 607
Fnu4HI GCNGC 1 cut(s) 426
FokI GGATG 3 cut(s) 380, 640, 684
Fsp4HI GCNGC 1 cut(s) 426
FspBI CTAG 1 cut(s) 93
GlaI GCGC 1 cut(s) 183
GluI GCNGC 1 cut(s) 426
GsaI CCCAGC 1 cut(s) 456
HaeIII GGCC 1 cut(s) 470
HapII CCGG 1 cut(s) 728
HhaI GCGC 1 cut(s) 184
Hin1II CATG 1 cut(s) 559
Hin6I GCGC 1 cut(s) 182
HinP1I GCGC 1 cut(s) 182
HinfI GANTC 3 cut(s) 96, 406, 448
HpaII CCGG 1 cut(s) 728
Hpy166II GTNNAC 3 cut(s) 256, 608, 725
Hpy188I TCNGA 3 cut(s) 15, 79, 447
Hpy188III TCNNGA 4 cut(s) 93, 142, 410, 625
Hpy8I GTNNAC 3 cut(s) 256, 608, 725
HpyCH4III ACNGT 2 cut(s) 617, 788
HpyCH4IV ACGT 2 cut(s) 106, 676
HpyCH4V TGCA 5 cut(s) 57, 120, 428, 497, 635
HpyF3I CTNAG 1 cut(s) 381
HpySE526I ACGT 2 cut(s) 106, 676
Hsp92II CATG 1 cut(s) 559
HspAI GCGC 1 cut(s) 182
Kzo9I GATC 1 cut(s) 144
Lsp1109I GCAGC 1 cut(s) 412
LweI GCATC 1 cut(s) 267
MaeI CTAG 1 cut(s) 93
MaeII ACGT 2 cut(s) 106, 676
MalI GATC 1 cut(s) 146
MboI GATC 1 cut(s) 144
MboII GAAGA 1 cut(s) 356
MhlI GDGCHC 1 cut(s) 31
MluCI AATT 3 cut(s) 88, 210, 362
MmeI TCCRAC 1 cut(s) 127
MnlI CCTC 7 cut(s) 15, 93, 247, 297, 346, 460, 499
MseI TTAA 4 cut(s) 332, 585, 764, 805
MspA1I CMGCKG 1 cut(s) 385
MspCI CTTAAG 1 cut(s) 763
MspI CCGG 1 cut(s) 728
MspR9I CCNGG 3 cut(s) 24, 472, 492
Mva1269I GAATGC 1 cut(s) 637
MvaI CCWGG 3 cut(s) 24, 472, 492
MvnI CGCG 1 cut(s) 182
NdeI CATATG 2 cut(s) 187, 402
NdeII GATC 1 cut(s) 144
NlaIII CATG 1 cut(s) 559
NlaIV GGNNCC 3 cut(s) 28, 510, 561
PceI AGGCCT 1 cut(s) 470
PctI GAATGC 1 cut(s) 637
PfeI GAWTC 3 cut(s) 96, 406, 448
PflMI CCANNNNNTGG 1 cut(s) 319
PkrI GCNGC 1 cut(s) 427
Psp1406I AACGTT 1 cut(s) 106
Psp6I CCWGG 3 cut(s) 22, 470, 490
PspFI CCCAGC 1 cut(s) 452
PspGI CCWGG 3 cut(s) 22, 470, 490
PspN4I GGNNCC 3 cut(s) 28, 510, 561
PspPI GGNCC 2 cut(s) 559, 725
SaqAI TTAA 4 cut(s) 332, 585, 764, 805
SatI GCNGC 1 cut(s) 426
Sau3AI GATC 1 cut(s) 144
Sau96I GGNCC 2 cut(s) 559, 725
ScrFI CCNGG 3 cut(s) 24, 472, 492
SduI GDGCHC 1 cut(s) 31
SfaNI GCATC 1 cut(s) 267
SinI GGWCC 2 cut(s) 559, 725
SmlI CTYRAG 2 cut(s) 418, 763
SmoI CTYRAG 2 cut(s) 418, 763
Sse9I AATT 3 cut(s) 88, 210, 362
SseBI AGGCCT 1 cut(s) 470
SsiI CCGC 1 cut(s) 385
SspMI CTAG 1 cut(s) 93
StuI AGGCCT 1 cut(s) 470
StyD4I CCNGG 3 cut(s) 22, 470, 490
TaaI ACNGT 2 cut(s) 617, 788
TaiI ACGT 2 cut(s) 109, 679
TaqI TCGA 2 cut(s) 275, 602
TasI AATT 3 cut(s) 88, 210, 362
TfiI GAWTC 3 cut(s) 96, 406, 448
Tru1I TTAA 4 cut(s) 332, 585, 764, 805
Tru9I TTAA 4 cut(s) 332, 585, 764, 805
TscAI CASTG 2 cut(s) 221, 622
TseI GCWGC 1 cut(s) 425
TspDTI ATGAA 8 cut(s) 140, 243, 282, 384, 419, 540, 544, 644
TspGWI ACGGA 1 cut(s) 159
TspRI CASTG 2 cut(s) 221, 622
Van91I CCANNNNNTGG 1 cut(s) 319
Vha464I CTTAAG 1 cut(s) 763
VpaK11BI GGWCC 2 cut(s) 559, 725
XbaI TCTAGA 1 cut(s) 92
XmiI GTMKAC 1 cut(s) 607
XspI CTAG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.