Rh4DG069400

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0018188
Physical Location & Seq
Forward (+)
10289326 .. 10294164
4839 bp
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UTR
Exon/CDS
Intron
Rh4DG069400.1

Sequence Viewer

Length: 732 bp
ATGCTGCAATCGCAAATAGTCAAATACGGTGTTCGCTTTCCCCACTTGGAAATTCAGACCAACACTCGGAACACTTCCCCGATAAACTTGAAACCACCTGAAAAAACATCCTTCGATGCTGCTGAGTTTTGCAGGCGTGCAATTCACTGGTATAGTTATGAACAGACCTCCATTTACTTTGATGTGGAGAAAGAGTGCTTCAACTCGATGCCTGTGCCTCATTCGTTGAACAATGGCATTATCCATAATTTTGGAGAGTCTCGAGGCCATTTGTGTTTGATATTGTCCAGCGCATTAACCTCTTTTGAAGAGTTTGATGTCTGGGAGTTGGATGAAGAATACTCTCAGTGGTATTTCACATACCATATGAATCTTGATTACTTGAGAGCTGCATTTTGCGGTAGATATCAGATTCCCAGCCATAGGTTTGTGGCCTGGGTTTTGAGTGTTGTTCCTGGTGCAAACAAAGAGGAGCCAGAAGTTGTGGTGCTGGTGTTTGGTATGGTTGTTTCCTACAATTTGAAAAATGGAACCCTTAAGAAACTTATGGGTTTGGTTCCTTGTCAAGAGGCTGCTGTTCATAATTTAAAGTGCCATTGGTTCATAGTTCCATCAGAGGATTCTATCTTTAAAAGTAACTTCTACTACTTTTTTGATGCTGGACGACTGCATGTCTTCAGTGTTTTCTCAATGTTCATTCATGGTCCCCAGTATGCTTGGCTTAAAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

243

Amino Acids

28.4

Weight (kDa)

6.4

Isoelectric Point (pI)

47.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018188)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0396941
rosa_laevigata RLG00000014123
rosa_roxburghii Rroxscaffold_5G00341930
rosa_rugosa Rorug06G0022800
rosa_samantha Rh4AG111700 Rh4AG111800 Rh4BG072000 Rh4DG069400 Rh6BG144400 Rh6DG128800
rosa_wichuraiana Rw4G006060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 399
AcsI RAATTY 1 cut(s) 51
AcuI CTGAAG 1 cut(s) 661
AfiI CCNNNNNNNGG 2 cut(s) 66, 423
AflII CTTAAG 1 cut(s) 536
AgsI TTSAA 5 cut(s) 91, 202, 229, 308, 523
AhdI GACNNNNNGTC 1 cut(s) 671
AjnI CCWGG 2 cut(s) 434, 454
AluBI AGCT 1 cut(s) 389
AluI AGCT 1 cut(s) 389
Alw26I GTCTC 1 cut(s) 264
Ama87I CYCGRG 1 cut(s) 261
AoxI GGCC 2 cut(s) 265, 432
ApeKI GCWGC 4 cut(s) 4, 119, 389, 572
ApoI RAATTY 1 cut(s) 51
AspLEI GCGC 1 cut(s) 293
AspS9I GGNCC 1 cut(s) 704
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 1 cut(s) 704
BbsI GAAGAC 1 cut(s) 667
BbvI GCAGC 3 cut(s) 106, 376, 559
BccI CCATC 1 cut(s) 619
BcgI CGANNNNNNTGC 2 cut(s) 196, 230
BciT130I CCWGG 2 cut(s) 436, 456
BcoDI GTCTC 1 cut(s) 264
BfrI CTTAAG 1 cut(s) 536
BisI GCNGC 4 cut(s) 5, 120, 390, 573
BlsI GCNGC 4 cut(s) 6, 121, 391, 574
Bme1390I CCNGG 2 cut(s) 436, 456
Bme18I GGWCC 1 cut(s) 704
BmeRI GACNNNNNGTC 1 cut(s) 671
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 704
BmiI GGNNCC 4 cut(s) 474, 532, 558, 706
BmrFI CCNGG 2 cut(s) 436, 456
BmrI ACTGGG 1 cut(s) 703
BmsI GCATC 3 cut(s) 106, 198, 646
BmuI ACTGGG 1 cut(s) 703
BpiI GAAGAC 1 cut(s) 667
BpuEI CTTGAG 1 cut(s) 403
BsaJI CCNNGG 1 cut(s) 435
BsaXI ACNNNNNCTCC 2 cut(s) 179, 209
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 423
Bse1I ACTGG 2 cut(s) 152, 709
BseBI CCWGG 2 cut(s) 436, 456
BseDI CCNNGG 1 cut(s) 435
BseGI GGATG 2 cut(s) 107, 337
BseLI CCNNNNNNNGG 2 cut(s) 66, 423
BseMII CTCAG 2 cut(s) 114, 359
BseNI ACTGG 2 cut(s) 152, 709
BseRI GAGGAG 1 cut(s) 485
BseXI GCAGC 3 cut(s) 106, 376, 559
BseYI CCCAGC 1 cut(s) 416
BshFI GGCC 2 cut(s) 267, 434
BsiHKCI CYCGRG 1 cut(s) 261
BslFI GGGAC 1 cut(s) 690
BslI CCNNNNNNNGG 2 cut(s) 66, 423
BsmAI GTCTC 1 cut(s) 264
BsmFI GGGAC 1 cut(s) 690
BsnI GGCC 2 cut(s) 267, 434
BsoBI CYCGRG 1 cut(s) 261
BspACI CCGC 1 cut(s) 399
BspANI GGCC 2 cut(s) 267, 434
BspCNI CTCAG 2 cut(s) 115, 358
BspLI GGNNCC 4 cut(s) 474, 532, 558, 706
BspTI CTTAAG 1 cut(s) 536
BsrI ACTGG 2 cut(s) 152, 709
BssECI CCNNGG 1 cut(s) 435
Bst2UI CCWGG 2 cut(s) 436, 456
Bst4CI ACNGT 1 cut(s) 29
Bst6I CTCTTC 1 cut(s) 303
BstAFI CTTAAG 1 cut(s) 536
BstC8I GCNNGC 2 cut(s) 134, 138
BstDEI CTNAG 2 cut(s) 123, 345
BstF5I GGATG 2 cut(s) 107, 337
BstHHI GCGC 1 cut(s) 293
BstMAI GTCTC 1 cut(s) 264
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 2 cut(s) 436, 456
BstNSI RCATGY 1 cut(s) 674
BstSCI CCNGG 2 cut(s) 434, 454
BstV1I GCAGC 3 cut(s) 106, 376, 559
BstV2I GAAGAC 1 cut(s) 667
BstXI CCANNNNNNTGG 1 cut(s) 251
BsuRI GGCC 2 cut(s) 267, 434
BtsCI GGATG 2 cut(s) 107, 337
BtsIMutI CAGTG 3 cut(s) 145, 353, 685
Cac8I GCNNGC 2 cut(s) 134, 138
CfoI GCGC 1 cut(s) 293
Cfr13I GGNCC 1 cut(s) 704
CviAII CATG 2 cut(s) 671, 701
CviJI RGCY 7 cut(s) 267, 389, 420, 434, 475, 572, 721
CviKI_1 RGCY 7 cut(s) 267, 389, 420, 434, 475, 572, 721
DdeI CTNAG 2 cut(s) 123, 345
DraI TTTAAA 2 cut(s) 588, 631
DriI GACNNNNNGTC 1 cut(s) 671
Eam1104I CTCTTC 1 cut(s) 303
Eam1105I GACNNNNNGTC 1 cut(s) 671
EarI CTCTTC 1 cut(s) 303
Eco32I GATATC 1 cut(s) 407
Eco47I GGWCC 1 cut(s) 704
Eco57I CTGAAG 1 cut(s) 661
Eco88I CYCGRG 1 cut(s) 261
EcoRII CCWGG 2 cut(s) 434, 454
EcoRV GATATC 1 cut(s) 407
FaeI CATG 2 cut(s) 674, 704
FaqI GGGAC 1 cut(s) 690
FatI CATG 2 cut(s) 670, 700
FauNDI CATATG 1 cut(s) 366
Fnu4HI GCNGC 4 cut(s) 5, 120, 390, 573
FokI GGATG 2 cut(s) 94, 344
Fsp4HI GCNGC 4 cut(s) 5, 120, 390, 573
GlaI GCGC 1 cut(s) 292
GluI GCNGC 4 cut(s) 5, 120, 390, 573
GsaI CCCAGC 1 cut(s) 420
HaeIII GGCC 2 cut(s) 267, 434
HhaI GCGC 1 cut(s) 293
Hin1II CATG 2 cut(s) 674, 704
Hin6I GCGC 1 cut(s) 291
HinP1I GCGC 1 cut(s) 291
HinfI GANTC 4 cut(s) 257, 370, 412, 620
Hpy188I TCNGA 4 cut(s) 57, 69, 411, 616
Hpy188III TCNNGA 3 cut(s) 261, 374, 566
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4V TGCA 6 cut(s) 7, 132, 140, 392, 461, 670
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 2 cut(s) 123, 345
Hsp92II CATG 2 cut(s) 674, 704
HspAI GCGC 1 cut(s) 291
LmnI GCTCC 1 cut(s) 472
Lsp1109I GCAGC 3 cut(s) 106, 376, 559
LweI GCATC 3 cut(s) 106, 198, 646
MaeIII GTNAC 1 cut(s) 635
MboII GAAGA 3 cut(s) 320, 347, 667
MluCI AATT 5 cut(s) 51, 141, 247, 517, 583
MlyI GAGTC 1 cut(s) 266
MmeI TCCRAC 1 cut(s) 309
MnlI CCTC 7 cut(s) 178, 228, 257, 310, 463, 562, 610
MseI TTAA 5 cut(s) 296, 537, 587, 630, 723
MspCI CTTAAG 1 cut(s) 536
MspR9I CCNGG 2 cut(s) 436, 456
MvaI CCWGG 2 cut(s) 436, 456
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeI CATATG 1 cut(s) 366
NlaIII CATG 2 cut(s) 674, 704
NlaIV GGNNCC 4 cut(s) 474, 532, 558, 706
NspI RCATGY 1 cut(s) 674
PaeR7I CTCGAG 1 cut(s) 261
PfeI GAWTC 3 cut(s) 370, 412, 620
PkrI GCNGC 4 cut(s) 6, 121, 391, 574
PleI GAGTC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 265
Psp6I CCWGG 2 cut(s) 434, 454
PspFI CCCAGC 1 cut(s) 416
PspGI CCWGG 2 cut(s) 434, 454
PspN4I GGNNCC 4 cut(s) 474, 532, 558, 706
PspPI GGNCC 1 cut(s) 704
SaqAI TTAA 5 cut(s) 296, 537, 587, 630, 723
SatI GCNGC 4 cut(s) 5, 120, 390, 573
Sau96I GGNCC 1 cut(s) 704
SchI GAGTC 1 cut(s) 266
ScrFI CCNGG 2 cut(s) 436, 456
SetI ASST 6 cut(s) 100, 170, 302, 391, 428, 731
SfaNI GCATC 3 cut(s) 106, 198, 646
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 704
SlaI CTCGAG 1 cut(s) 261
SmlI CTYRAG 3 cut(s) 261, 382, 536
SmoI CTYRAG 3 cut(s) 261, 382, 536
Sse9I AATT 5 cut(s) 51, 141, 247, 517, 583
SsiI CCGC 1 cut(s) 399
StyD4I CCNGG 2 cut(s) 434, 454
TaaI ACNGT 1 cut(s) 29
TaqI TCGA 3 cut(s) 114, 206, 262
TasI AATT 5 cut(s) 51, 141, 247, 517, 583
TfiI GAWTC 3 cut(s) 370, 412, 620
Tru1I TTAA 5 cut(s) 296, 537, 587, 630, 723
Tru9I TTAA 5 cut(s) 296, 537, 587, 630, 723
TscAI CASTG 3 cut(s) 152, 353, 685
TseI GCWGC 4 cut(s) 4, 119, 389, 572
TspDTI ATGAA 7 cut(s) 174, 348, 383, 569, 592, 685, 689
TspRI CASTG 3 cut(s) 152, 353, 685
Vha464I CTTAAG 1 cut(s) 536
VpaK11BI GGWCC 1 cut(s) 704
XapI RAATTY 1 cut(s) 51
XceI RCATGY 1 cut(s) 674
XhoI CTCGAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.