Rh6BG144400

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0018188
Physical Location & Seq
Forward (+)
23122360 .. 23122674
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG144400.1

Sequence Viewer

Length: 315 bp
ATGCCAGACCATGAGGATGATTTTAAGCCAGTCAGATATTTTGGGGAGTCTCGAGGCCATCTACATGTGATAATGTTCGAAAAGAACGCTGTTCAGTTTGATGTGTTGGAGATGGAGGAAGATTACACTGTATGGTACGTGAGGTACCATGTGAATCTTGAGTCCATTAGAGCTGCTTTCAGGGATGTGGCAGCTAATATCAACCATAGGTTTCTGGCTTCGGTCTTGAGTTTGGTTCAAGAAGAGAAGGAAGAGGACTCAAAAATAGTCCTGAGCGCCTTCAGTATGGTTGTGGCCGGCCTACAACTTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

104

Amino Acids

12.15

Weight (kDa)

4.95

Isoelectric Point (pI)

43.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018188)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0396941
rosa_laevigata RLG00000014123
rosa_roxburghii Rroxscaffold_5G00341930
rosa_rugosa Rorug06G0022800
rosa_samantha Rh4AG111700 Rh4AG111800 Rh4BG072000 Rh4DG069400 Rh6BG144400 Rh6DG128800
rosa_wichuraiana Rw4G006060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 144
AccB1I GGYRCC 1 cut(s) 144
AcoI YGGCCR 1 cut(s) 294
AcuI CTGAAG 2 cut(s) 265, 293
AfaI GTAC 2 cut(s) 137, 146
AflIII ACRYGT 1 cut(s) 64
AgsI TTSAA 1 cut(s) 239
AluBI AGCT 2 cut(s) 173, 194
AluI AGCT 2 cut(s) 173, 194
Alw26I GTCTC 1 cut(s) 54
Ama87I CYCGRG 1 cut(s) 51
AoxI GGCC 3 cut(s) 55, 294, 298
ApeKI GCWGC 2 cut(s) 173, 191
Asp718I GGTACC 1 cut(s) 144
AspLEI GCGC 1 cut(s) 278
AsuII TTCGAA 1 cut(s) 78
AvaI CYCGRG 1 cut(s) 51
BanI GGYRCC 1 cut(s) 144
BbvI GCAGC 2 cut(s) 160, 203
BccI CCATC 2 cut(s) 66, 106
BcoDI GTCTC 1 cut(s) 54
BfoI RGCGCY 1 cut(s) 279
BisI GCNGC 2 cut(s) 174, 192
BlsI GCNGC 2 cut(s) 175, 193
BmeT110I CYCGRG 1 cut(s) 51
BmiI GGNNCC 1 cut(s) 146
Bpu10I CCTNAGC 1 cut(s) 272
Bpu14I TTCGAA 1 cut(s) 78
BpuEI CTTGAG 2 cut(s) 179, 247
BsaAI YACGTR 1 cut(s) 139
Bse118I RCCGGY 1 cut(s) 296
Bse1I ACTGG 1 cut(s) 29
BseGI GGATG 2 cut(s) 22, 190
BseMII CTCAG 1 cut(s) 263
BseNI ACTGG 1 cut(s) 29
BseXI GCAGC 2 cut(s) 160, 203
BshFI GGCC 3 cut(s) 57, 296, 300
BshNI GGYRCC 1 cut(s) 144
BsiHKCI CYCGRG 1 cut(s) 51
BsiSI CCGG 1 cut(s) 297
BsmAI GTCTC 1 cut(s) 54
BsnI GGCC 3 cut(s) 57, 296, 300
BsoBI CYCGRG 1 cut(s) 51
Bsp119I TTCGAA 1 cut(s) 78
BspANI GGCC 3 cut(s) 57, 296, 300
BspCNI CTCAG 1 cut(s) 264
BspLI GGNNCC 1 cut(s) 146
BspT104I TTCGAA 1 cut(s) 78
BspT107I GGYRCC 1 cut(s) 144
BsrFI RCCGGY 1 cut(s) 296
BsrI ACTGG 1 cut(s) 29
BssAI RCCGGY 1 cut(s) 296
Bst4CI ACNGT 1 cut(s) 130
Bst6I CTCTTC 2 cut(s) 237, 246
BstBAI YACGTR 1 cut(s) 139
BstBI TTCGAA 1 cut(s) 78
BstC8I GCNNGC 1 cut(s) 298
BstDEI CTNAG 1 cut(s) 272
BstF5I GGATG 2 cut(s) 22, 190
BstH2I RGCGCY 1 cut(s) 279
BstHHI GCGC 1 cut(s) 278
BstMAI GTCTC 1 cut(s) 54
BstNSI RCATGY 1 cut(s) 68
BstV1I GCAGC 2 cut(s) 160, 203
BsuRI GGCC 3 cut(s) 57, 296, 300
BtsCI GGATG 2 cut(s) 22, 190
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 298
CfoI GCGC 1 cut(s) 278
Cfr10I RCCGGY 1 cut(s) 296
Csp6I GTAC 2 cut(s) 136, 145
CviAII CATG 3 cut(s) 11, 65, 149
CviJI RGCY 7 cut(s) 28, 57, 173, 194, 218, 296, 300
CviKI_1 RGCY 7 cut(s) 28, 57, 173, 194, 218, 296, 300
CviQI GTAC 2 cut(s) 136, 145
DdeI CTNAG 1 cut(s) 272
EaeI YGGCCR 1 cut(s) 294
Eam1104I CTCTTC 2 cut(s) 237, 246
EarI CTCTTC 2 cut(s) 237, 246
Eco57I CTGAAG 2 cut(s) 265, 293
Eco88I CYCGRG 1 cut(s) 51
FaeI CATG 3 cut(s) 14, 68, 152
FaiI YATR 6 cut(s) 12, 66, 133, 150, 207, 287
FatI CATG 3 cut(s) 10, 64, 148
Fnu4HI GCNGC 2 cut(s) 174, 192
FokI GGATG 2 cut(s) 29, 197
FseI GGCCGGCC 1 cut(s) 300
Fsp4HI GCNGC 2 cut(s) 174, 192
GlaI GCGC 1 cut(s) 277
GluI GCNGC 2 cut(s) 174, 192
HaeII RGCGCY 1 cut(s) 279
HaeIII GGCC 3 cut(s) 57, 296, 300
HapII CCGG 1 cut(s) 297
HhaI GCGC 1 cut(s) 278
Hin1II CATG 3 cut(s) 14, 68, 152
Hin6I GCGC 1 cut(s) 276
HinP1I GCGC 1 cut(s) 276
HinfI GANTC 4 cut(s) 47, 154, 161, 257
HpaII CCGG 1 cut(s) 297
Hpy188I TCNGA 1 cut(s) 35
Hpy188III TCNNGA 5 cut(s) 51, 158, 226, 239, 271
HpyAV CCTTC 2 cut(s) 241, 289
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4IV ACGT 1 cut(s) 138
HpyF3I CTNAG 1 cut(s) 272
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 3 cut(s) 14, 68, 152
HspAI GCGC 1 cut(s) 276
KpnI GGTACC 1 cut(s) 148
KroI GCCGGC 1 cut(s) 296
KroNI GCCGGC 1 cut(s) 298
LpnPI CCDG 6 cut(s) 18, 42, 166, 200, 284, 310
Lsp1109I GCAGC 2 cut(s) 160, 203
MaeII ACGT 1 cut(s) 138
MboII GAAGA 3 cut(s) 131, 254, 263
MlyI GAGTC 3 cut(s) 56, 170, 251
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 5 cut(s) 7, 47, 109, 135, 247
MroNI GCCGGC 1 cut(s) 296
MseI TTAA 1 cut(s) 24
MslI CAYNNNNRTG 2 cut(s) 15, 63
MspI CCGG 1 cut(s) 297
NaeI GCCGGC 1 cut(s) 298
NgoMIV GCCGGC 1 cut(s) 296
NlaIII CATG 3 cut(s) 14, 68, 152
NlaIV GGNNCC 1 cut(s) 146
NspI RCATGY 1 cut(s) 68
NspV TTCGAA 1 cut(s) 78
PaeR7I CTCGAG 1 cut(s) 51
PciI ACATGT 1 cut(s) 64
PdiI GCCGGC 1 cut(s) 298
PfeI GAWTC 1 cut(s) 154
PkrI GCNGC 2 cut(s) 175, 193
PleI GAGTC 3 cut(s) 55, 169, 251
PpsI GAGTC 3 cut(s) 55, 169, 251
Ppu21I YACGTR 1 cut(s) 139
PscI ACATGT 1 cut(s) 64
PspN4I GGNNCC 1 cut(s) 146
RigI GGCCGGCC 1 cut(s) 300
RsaI GTAC 2 cut(s) 137, 146
RsaNI GTAC 2 cut(s) 136, 145
RseI CAYNNNNRTG 2 cut(s) 15, 63
SaqAI TTAA 1 cut(s) 24
SatI GCNGC 2 cut(s) 174, 192
SchI GAGTC 3 cut(s) 56, 170, 251
SetI ASST 5 cut(s) 141, 146, 175, 196, 212
Sfr274I CTCGAG 1 cut(s) 51
SfuI TTCGAA 1 cut(s) 78
SlaI CTCGAG 1 cut(s) 51
SmiMI CAYNNNNRTG 2 cut(s) 15, 63
SmlI CTYRAG 3 cut(s) 51, 158, 226
SmoI CTYRAG 3 cut(s) 51, 158, 226
TaaI ACNGT 1 cut(s) 130
TaiI ACGT 1 cut(s) 141
TaqI TCGA 2 cut(s) 52, 78
TaqII GACCGA 1 cut(s) 211
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TscAI CASTG 1 cut(s) 133
TseI GCWGC 2 cut(s) 173, 191
TspRI CASTG 1 cut(s) 133
XceI RCATGY 1 cut(s) 68
XhoI CTCGAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.