Rroxscaffold_5G00341930

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0018188
Physical Location & Seq
Forward (+)
10621045 .. 10623490
2446 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00341930.1

Sequence Viewer

Length: 810 bp
ATGTGGTGTCGCCCGGTGGCCGTGGAGCGAGAGAGAAGGGCAAGAGCCGATGCTCGTTTCGGACGAGAAAGGGAGAGTGAGAGAGTGAGAGCTGCAGAATTTTTTTGCTTAAGCCAAAGAACAGACGACAGCCCCGCGCATGCAATTCACTGGTATAGTTATGAACAGACCTCCATTTACTTTGATGTGGAGAAAGAGTGCTTCAACTTGATGCCTATGCCTCATTCGTTGAACAACGGCAGTATCCATTATTTTGGAGAGTCTCGAGGCCATTTGTGTTTGATATTGTCCAGCGCATTAACCTCTTTTGAAGAGTTTGATGTCTGGGAGTTGGATGAAGAATACTCGCAGTGGTCTTTCACATACCATATGAATCTTGATTACTTGAGAGCTGCATTTTGCAGTAAATATCAGATTCCCAGCCATAGGTTTGTGGCCTGGGTTTTGAGTGTTGTTCCTGGTGCAAACAAAGAGGAGCCAGAAGTTGTGGTGCTGGTGTTTGGTATGGTTGTTTCCTACAATTTGAAAAATGAAACCCTTAAGAAACTTATGGGTTTGGTTCCTTGTCAAGAGGCTGTTGTTCGTAATTTAAAGTGCCATTGTTGGGAGTTATTTATTGTTTCTTCACAGTTTTTACTGCCGTCCTCAGGAATTCTCTGGAGGGGCCCAGATGCAGTTGAAGTAGATTTATCTGTGTATGAGTTTGTATTTTTGAGCTGTCATGTGCCTTCCCACCTGTACTTTTCAGAGAAACATGCTTTCAATCTCATTGTTTCTTTGAAAATGGAAGCTCAGGCTCATGTAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

269

Amino Acids

31.22

Weight (kDa)

5.74

Isoelectric Point (pI)

47.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018188)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0396941
rosa_laevigata RLG00000014123
rosa_roxburghii Rroxscaffold_5G00341930
rosa_rugosa Rorug06G0022800
rosa_samantha Rh4AG111700 Rh4AG111800 Rh4BG072000 Rh4DG069400 Rh6BG144400 Rh6DG128800
rosa_wichuraiana Rw4G006060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 137
AciI CCGC 1 cut(s) 135
AcoI YGGCCR 1 cut(s) 18
AcsI RAATTY 2 cut(s) 98, 651
AfaI GTAC 1 cut(s) 740
AfiI CCNNNNNNNGG 3 cut(s) 426, 604, 647
AflII CTTAAG 2 cut(s) 109, 539
AgsI TTSAA 7 cut(s) 205, 232, 311, 526, 680, 763, 781
AjnI CCWGG 2 cut(s) 437, 457
AluBI AGCT 4 cut(s) 92, 392, 717, 791
AluI AGCT 4 cut(s) 92, 392, 717, 791
Alw26I GTCTC 1 cut(s) 267
Ama87I CYCGRG 1 cut(s) 264
AoxI GGCC 4 cut(s) 18, 268, 435, 664
ApaI GGGCCC 1 cut(s) 668
ApeKI GCWGC 2 cut(s) 92, 392
ApoI RAATTY 2 cut(s) 98, 651
AspLEI GCGC 2 cut(s) 139, 296
AspS9I GGNCC 2 cut(s) 664, 665
AsuC2I CCSGG 1 cut(s) 14
AvaI CYCGRG 1 cut(s) 264
AxyI CCTNAGG 1 cut(s) 646
BaeGI GKGCMC 1 cut(s) 668
BaeI ACNNNNGTAYC 2 cut(s) 226, 259
BanII GRGCYC 1 cut(s) 668
BbvI GCAGC 2 cut(s) 79, 379
BceAI ACGGC 3 cut(s) 5, 253, 625
BciT130I CCWGG 2 cut(s) 439, 459
BciVI GTATCC 1 cut(s) 254
BcnI CCSGG 1 cut(s) 14
BcoDI GTCTC 1 cut(s) 267
BfmI CTRYAG 1 cut(s) 93
BfrI CTTAAG 2 cut(s) 109, 539
BfuI GTATCC 1 cut(s) 254
BisI GCNGC 2 cut(s) 93, 393
BlsI GCNGC 2 cut(s) 94, 394
Bme1390I CCNGG 3 cut(s) 14, 439, 459
BmeT110I CYCGRG 1 cut(s) 264
BmgT120I GGNCC 2 cut(s) 664, 665
BmiI GGNNCC 4 cut(s) 477, 561, 665, 666
BmrFI CCNGG 3 cut(s) 14, 439, 459
BmsI GCATC 3 cut(s) 40, 201, 661
BpmI CTGGAG 1 cut(s) 679
Bpu10I CCTNAGC 1 cut(s) 792
BpuEI CTTGAG 1 cut(s) 406
BpuMI CCSGG 1 cut(s) 14
BsaJI CCNNGG 2 cut(s) 21, 438
BsaXI ACNNNNNCTCC 2 cut(s) 182, 212
Bsc4I CCNNNNNNNGG 3 cut(s) 426, 604, 647
Bse1I ACTGG 1 cut(s) 155
Bse21I CCTNAGG 1 cut(s) 646
BseBI CCWGG 2 cut(s) 439, 459
BseDI CCNNGG 2 cut(s) 21, 438
BseGI GGATG 1 cut(s) 340
BseLI CCNNNNNNNGG 3 cut(s) 426, 604, 647
BseMII CTCAG 2 cut(s) 660, 806
BseNI ACTGG 1 cut(s) 155
BseRI GAGGAG 1 cut(s) 488
BseSI GKGCMC 1 cut(s) 668
BseXI GCAGC 2 cut(s) 79, 379
BseYI CCCAGC 1 cut(s) 419
Bsh1236I CGCG 1 cut(s) 137
BshFI GGCC 4 cut(s) 20, 270, 437, 666
BsiHKCI CYCGRG 1 cut(s) 264
BsiSI CCGG 1 cut(s) 14
BslI CCNNNNNNNGG 3 cut(s) 426, 604, 647
BsmAI GTCTC 1 cut(s) 267
BsnI GGCC 4 cut(s) 20, 270, 437, 666
BsoBI CYCGRG 1 cut(s) 264
Bsp120I GGGCCC 1 cut(s) 664
Bsp1286I GDGCHC 1 cut(s) 668
BspACI CCGC 1 cut(s) 135
BspANI GGCC 4 cut(s) 20, 270, 437, 666
BspCNI CTCAG 2 cut(s) 659, 805
BspFNI CGCG 1 cut(s) 137
BspLI GGNNCC 4 cut(s) 477, 561, 665, 666
BspMAI CTGCAG 1 cut(s) 97
BspTI CTTAAG 2 cut(s) 109, 539
BsrI ACTGG 1 cut(s) 155
BssECI CCNNGG 2 cut(s) 21, 438
Bst2UI CCWGG 2 cut(s) 439, 459
Bst4CI ACNGT 1 cut(s) 630
Bst6I CTCTTC 1 cut(s) 306
BstAFI CTTAAG 2 cut(s) 109, 539
BstC8I GCNNGC 1 cut(s) 141
BstDEI CTNAG 2 cut(s) 646, 792
BstDSI CCRYGG 1 cut(s) 21
BstF5I GGATG 1 cut(s) 340
BstFNI CGCG 1 cut(s) 137
BstHHI GCGC 2 cut(s) 139, 296
BstMAI GTCTC 1 cut(s) 267
BstMWI GCNNNNNNNGC 1 cut(s) 803
BstNI CCWGG 2 cut(s) 439, 459
BstNSI RCATGY 2 cut(s) 143, 758
BstSCI CCNGG 3 cut(s) 12, 437, 457
BstSFI CTRYAG 1 cut(s) 93
BstSLI GKGCMC 1 cut(s) 668
BstUI CGCG 1 cut(s) 137
BstV1I GCAGC 2 cut(s) 79, 379
BstXI CCANNNNNNTGG 1 cut(s) 254
Bsu36I CCTNAGG 1 cut(s) 646
BsuI GTATCC 1 cut(s) 254
BsuRI GGCC 4 cut(s) 20, 270, 437, 666
BtgI CCRYGG 1 cut(s) 21
BtsCI GGATG 1 cut(s) 340
BtsI GCAGTG 1 cut(s) 356
BtsIMutI CAGTG 2 cut(s) 148, 356
Cac8I GCNNGC 1 cut(s) 141
CfoI GCGC 2 cut(s) 139, 296
Cfr13I GGNCC 2 cut(s) 664, 665
Csp6I GTAC 1 cut(s) 739
CviAII CATG 4 cut(s) 140, 722, 755, 800
CviQI GTAC 1 cut(s) 739
DdeI CTNAG 2 cut(s) 646, 792
DraI TTTAAA 1 cut(s) 591
EaeI YGGCCR 1 cut(s) 18
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Eco24I GRGCYC 1 cut(s) 668
Eco81I CCTNAGG 1 cut(s) 646
Eco88I CYCGRG 1 cut(s) 264
EcoO109I RGGNCCY 1 cut(s) 664
EcoRI GAATTC 1 cut(s) 651
EcoRII CCWGG 2 cut(s) 437, 457
EcoT38I GRGCYC 1 cut(s) 668
FaeI CATG 4 cut(s) 143, 725, 758, 803
FatI CATG 4 cut(s) 139, 721, 754, 799
FauI CCCGC 1 cut(s) 142
FauNDI CATATG 1 cut(s) 369
Fnu4HI GCNGC 2 cut(s) 93, 393
FokI GGATG 1 cut(s) 347
FriOI GRGCYC 1 cut(s) 668
Fsp4HI GCNGC 2 cut(s) 93, 393
GlaI GCGC 2 cut(s) 138, 295
GluI GCNGC 2 cut(s) 93, 393
GsaI CCCAGC 1 cut(s) 423
GsuI CTGGAG 1 cut(s) 679
HaeIII GGCC 4 cut(s) 20, 270, 437, 666
HapII CCGG 1 cut(s) 14
HhaI GCGC 2 cut(s) 139, 296
Hin1II CATG 4 cut(s) 143, 725, 758, 803
Hin6I GCGC 2 cut(s) 137, 294
HinP1I GCGC 2 cut(s) 137, 294
HinfI GANTC 3 cut(s) 260, 373, 415
HpaII CCGG 1 cut(s) 14
Hpy188I TCNGA 3 cut(s) 62, 414, 748
Hpy188III TCNNGA 5 cut(s) 264, 377, 569, 648, 658
HpyAV CCTTC 2 cut(s) 30, 738
HpyCH4III ACNGT 1 cut(s) 630
HpyCH4V TGCA 6 cut(s) 95, 143, 395, 402, 464, 674
HpyF10VI GCNNNNNNNGC 1 cut(s) 803
HpyF3I CTNAG 2 cut(s) 646, 792
Hsp92II CATG 4 cut(s) 143, 725, 758, 803
HspAI GCGC 2 cut(s) 137, 294
LmnI GCTCC 2 cut(s) 25, 475
Lsp1109I GCAGC 2 cut(s) 79, 379
LweI GCATC 3 cut(s) 40, 201, 661
MboII GAAGA 3 cut(s) 323, 350, 615
MhlI GDGCHC 1 cut(s) 668
MluCI AATT 5 cut(s) 98, 144, 520, 586, 651
MlyI GAGTC 1 cut(s) 269
MmeI TCCRAC 1 cut(s) 312
MnlI CCTC 8 cut(s) 181, 231, 260, 313, 466, 565, 654, 655
MseI TTAA 4 cut(s) 110, 299, 540, 590
MspCI CTTAAG 2 cut(s) 109, 539
MspI CCGG 1 cut(s) 14
MspR9I CCNGG 3 cut(s) 14, 439, 459
MvaI CCWGG 2 cut(s) 439, 459
MvnI CGCG 1 cut(s) 137
MwoI GCNNNNNNNGC 1 cut(s) 803
NciI CCSGG 1 cut(s) 14
NdeI CATATG 1 cut(s) 369
NlaIII CATG 4 cut(s) 143, 725, 758, 803
NlaIV GGNNCC 4 cut(s) 477, 561, 665, 666
NspI RCATGY 2 cut(s) 143, 758
PaeI GCATGC 1 cut(s) 143
PaeR7I CTCGAG 1 cut(s) 264
PcsI WCGNNNNNNNCGW 1 cut(s) 61
PfeI GAWTC 2 cut(s) 373, 415
PkrI GCNGC 2 cut(s) 94, 394
PleI GAGTC 1 cut(s) 268
PpsI GAGTC 1 cut(s) 268
Psp6I CCWGG 2 cut(s) 437, 457
PspFI CCCAGC 1 cut(s) 419
PspGI CCWGG 2 cut(s) 437, 457
PspN4I GGNNCC 4 cut(s) 477, 561, 665, 666
PspOMI GGGCCC 1 cut(s) 664
PspPI GGNCC 2 cut(s) 664, 665
PstI CTGCAG 1 cut(s) 97
RsaI GTAC 1 cut(s) 740
RsaNI GTAC 1 cut(s) 739
SaqAI TTAA 4 cut(s) 110, 299, 540, 590
SatI GCNGC 2 cut(s) 93, 393
Sau96I GGNCC 2 cut(s) 664, 665
SchI GAGTC 1 cut(s) 269
ScrFI CCNGG 3 cut(s) 14, 439, 459
SduI GDGCHC 1 cut(s) 668
SetI ASST 8 cut(s) 94, 173, 305, 394, 431, 719, 738, 793
SfaNI GCATC 3 cut(s) 40, 201, 661
SfcI CTRYAG 1 cut(s) 93
Sfr274I CTCGAG 1 cut(s) 264
SlaI CTCGAG 1 cut(s) 264
SmlI CTYRAG 4 cut(s) 109, 264, 385, 539
SmoI CTYRAG 4 cut(s) 109, 264, 385, 539
SphI GCATGC 1 cut(s) 143
Sse9I AATT 5 cut(s) 98, 144, 520, 586, 651
SsiI CCGC 1 cut(s) 135
StyD4I CCNGG 3 cut(s) 12, 437, 457
TaaI ACNGT 1 cut(s) 630
TaqI TCGA 1 cut(s) 265
TasI AATT 5 cut(s) 98, 144, 520, 586, 651
TatI WGTACW 1 cut(s) 738
TfiI GAWTC 2 cut(s) 373, 415
Tru1I TTAA 4 cut(s) 110, 299, 540, 590
Tru9I TTAA 4 cut(s) 110, 299, 540, 590
TscAI CASTG 2 cut(s) 155, 356
TseI GCWGC 2 cut(s) 92, 392
TspDTI ATGAA 4 cut(s) 177, 351, 386, 546
TspRI CASTG 2 cut(s) 155, 356
Vha464I CTTAAG 2 cut(s) 109, 539
XapI RAATTY 2 cut(s) 98, 651
XceI RCATGY 2 cut(s) 143, 758
XhoI CTCGAG 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.