Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0010616

Physical Location & Seq

Genomic Coordinates Reverse (-)

50119597 .. 50120388

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014258

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGTGTGTTTATGGGTTCAAGAAAGTGATGCCCTTTTCGTTTTATGTTTGTGGCAGGTGCCCTATTGCTTCGTTTAATTTGGGTCGTCAAGTATCGAATAAGCTATTGTTTCATTGCAATTTAAGCGACAGCCTTATTAAAGGAAGCAGAATTCATAAGACATATCAACTCAAGGCTGGCTTTGGGAATCGATTAAATCCGGGTGAATTGCATGATGGGCCCCAAATCGCTGTTAAAAGGATGGAATCTGTGGTAGTGGGTACCAAGGGGTTGAATGAGTTTCCAGTAGAAATTGCAGTCCTCACCACAGTTAGGCATAGGCATTTGGTTGCTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase_Tyr

Protein Analysis

113

Amino Acids

12.5

Weight (kDa)

9.83

Isoelectric Point (pI)

33.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010616)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0326291 RchiOBHm_Chr1g0328921 RchiOBHm_Chr5g0055391
rosa_laevigata	RLG00000014258 RLG00000029297
rosa_multiflora	Rmu_sc0002986.1_g000011
rosa_roxburghii	Rroxscaffold_7G00195160
rosa_samantha	Rh1DG282800 Rh2BG253500 Rh2BG386300 Rh2BG559700 Rh2DG112600 Rh3DG364300 Rh4CG183600 Rh4DG261400 Rh5BG325500 Rh5DG123300 Rh5DG336400 Rh6AG394900 Rh7AG145900
rosa_wichuraiana	Rw6G034550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	45
Acc36I	ACCTGC	1 cut(s)	45
Acc65I	GGTACC	1 cut(s)	260
AccB1I	GGYRCC	2 cut(s)	57, 260
AcsI	RAATTY	1 cut(s)	150
AfaI	GTAC	1 cut(s)	262
AfiI	CCNNNNNNNGG	1 cut(s)	312
AgsI	TTSAA	2 cut(s)	19, 274
AluBI	AGCT	1 cut(s)	103
AluI	AGCT	1 cut(s)	103
AoxI	GGCC	1 cut(s)	218
ApaI	GGGCCC	1 cut(s)	222
ApoI	RAATTY	1 cut(s)	150
Asp718I	GGTACC	1 cut(s)	260
AspS9I	GGNCC	2 cut(s)	218, 219
AsuC2I	CCSGG	1 cut(s)	201
AsuHPI	GGTGA	2 cut(s)	215, 295
BaeGI	GKGCMC	2 cut(s)	62, 222
BanI	GGYRCC	2 cut(s)	57, 260
BanII	GRGCYC	1 cut(s)	222
BccI	CCATC	2 cut(s)	209, 235
BcnI	CCSGG	1 cut(s)	201
BfuAI	ACCTGC	1 cut(s)	45
Bme1390I	CCNGG	1 cut(s)	201
BmgT120I	GGNCC	2 cut(s)	218, 219
BmiI	GGNNCC	4 cut(s)	59, 220, 221, 262
BmrFI	CCNGG	1 cut(s)	201
BmsI	GCATC	1 cut(s)	18
BpuEI	CTTGAG	1 cut(s)	155
BpuMI	CCSGG	1 cut(s)	201
Bsa29I	ATCGAT	1 cut(s)	190
BsaJI	CCNNGG	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
Bse1I	ACTGG	1 cut(s)	284
Bse3DI	GCAATG	1 cut(s)	112
BseCI	ATCGAT	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	1 cut(s)	246
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseMI	GCAATG	1 cut(s)	112
BseNI	ACTGG	1 cut(s)	284
BseSI	GKGCMC	2 cut(s)	62, 222
BshFI	GGCC	1 cut(s)	220
BshNI	GGYRCC	2 cut(s)	57, 260
BshVI	ATCGAT	1 cut(s)	190
BsiSI	CCGG	1 cut(s)	200
BslI	CCNNNNNNNGG	1 cut(s)	312
BsnI	GGCC	1 cut(s)	220
Bsp120I	GGGCCC	1 cut(s)	218
Bsp1286I	GDGCHC	2 cut(s)	62, 222
BspANI	GGCC	1 cut(s)	220
BspDI	ATCGAT	1 cut(s)	190
BspLI	GGNNCC	4 cut(s)	59, 220, 221, 262
BspMI	ACCTGC	1 cut(s)	45
BspT107I	GGYRCC	2 cut(s)	57, 260
BsrDI	GCAATG	1 cut(s)	112
BsrI	ACTGG	1 cut(s)	284
BssECI	CCNNGG	1 cut(s)	264
BssT1I	CCWWGG	1 cut(s)	264
Bst4CI	ACNGT	1 cut(s)	310
BstC8I	GCNNGC	1 cut(s)	178
BstF5I	GGATG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	2 cut(s)	123, 217
BstSCI	CCNGG	1 cut(s)	199
BstSLI	GKGCMC	2 cut(s)	62, 222
Bsu15I	ATCGAT	1 cut(s)	190
BsuRI	GGCC	1 cut(s)	220
BsuTUI	ATCGAT	1 cut(s)	190
BtsCI	GGATG	1 cut(s)	246
BveI	ACCTGC	1 cut(s)	45
Cac8I	GCNNGC	1 cut(s)	178
Cfr13I	GGNCC	2 cut(s)	218, 219
ClaI	ATCGAT	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	261
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	5 cut(s)	103, 132, 176, 180, 220
CviKI_1	RGCY	5 cut(s)	103, 132, 176, 180, 220
CviQI	GTAC	1 cut(s)	261
Eco130I	CCWWGG	1 cut(s)	264
Eco24I	GRGCYC	1 cut(s)	222
EcoO109I	RGGNCCY	1 cut(s)	219
EcoRI	GAATTC	1 cut(s)	150
EcoT14I	CCWWGG	1 cut(s)	264
EcoT38I	GRGCYC	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	1 cut(s)	215
FaiI	YATR	6 cut(s)	12, 45, 156, 163, 213, 318
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FatI	CATG	1 cut(s)	211
FokI	GGATG	1 cut(s)	253
FriOI	GRGCYC	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	220
HapII	CCGG	1 cut(s)	200
Hin1II	CATG	1 cut(s)	215
HinfI	GANTC	2 cut(s)	187, 245
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	2 cut(s)	215, 295
Hpy188III	TCNNGA	1 cut(s)	19
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4V	TGCA	3 cut(s)	117, 211, 296
HpyF10VI	GCNNNNNNNGC	2 cut(s)	123, 217
Hsp92II	CATG	1 cut(s)	215
KpnI	GGTACC	1 cut(s)	264
LpnPI	CCDG	4 cut(s)	40, 162, 213, 297
LweI	GCATC	1 cut(s)	18
MhlI	GDGCHC	2 cut(s)	62, 222
MluCI	AATT	5 cut(s)	76, 118, 150, 206, 291
MnlI	CCTC	1 cut(s)	311
MseI	TTAA	5 cut(s)	75, 122, 138, 194, 234
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	1 cut(s)	201
MwoI	GCNNNNNNNGC	2 cut(s)	123, 217
NciI	CCSGG	1 cut(s)	201
NlaIII	CATG	1 cut(s)	215
NlaIV	GGNNCC	4 cut(s)	59, 220, 221, 262
PaqCI	CACCTGC	1 cut(s)	45
PfeI	GAWTC	2 cut(s)	187, 245
PspN4I	GGNNCC	4 cut(s)	59, 220, 221, 262
PspOMI	GGGCCC	1 cut(s)	218
PspPI	GGNCC	2 cut(s)	218, 219
RsaI	GTAC	1 cut(s)	262
RsaNI	GTAC	1 cut(s)	261
SaqAI	TTAA	5 cut(s)	75, 122, 138, 194, 234
Sau96I	GGNCC	2 cut(s)	218, 219
ScrFI	CCNGG	1 cut(s)	201
SduI	GDGCHC	2 cut(s)	62, 222
SetI	ASST	2 cut(s)	59, 105
SfaNI	GCATC	1 cut(s)	18
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	5 cut(s)	76, 118, 150, 206, 291
StyD4I	CCNGG	1 cut(s)	199
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	1 cut(s)	310
TaqI	TCGA	2 cut(s)	95, 190
TasI	AATT	5 cut(s)	76, 118, 150, 206, 291
TfiI	GAWTC	2 cut(s)	187, 245
Tru1I	TTAA	5 cut(s)	75, 122, 138, 194, 234
Tru9I	TTAA	5 cut(s)	75, 122, 138, 194, 234
TspDTI	ATGAA	2 cut(s)	101, 143
XapI	RAATTY	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.