Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002986.1

Orthogroup ID

OG0010616

Physical Location & Seq

Genomic Coordinates Reverse (-)

46015 .. 47233

Gene Structure 1219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002986.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atgattattggaatttttgtttcctttatagtggttagggaagagaggggcccgtatagtgatcctcaacatccctatttctatgaagatgaagatgtttggatggcaccaggcttcataaaccaattctatgaagtccctgattactggaaaacatatgtgcatgaggttgatgaggaaagggaaatgtggttgaactccttctataaagctccactgagaatacctatgccttctaagcttgagtactggtggtcaaagggaagcaaaattcataagacatataaagctggcttttgggaattgattaaatttgggagagaaggattggagggtgatgagctaagaaggaattctgatgtcatggagatcctaaagaagacaagtttccaaaggttattggctctagcgcgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0006996 GO:0007275 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009658 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0022414 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034357 GO:0034613 GO:0042170 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0061458 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MORN

Protein Analysis

138

Amino Acids

16.68

Weight (kDa)

5.67

Isoelectric Point (pI)

40.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010616)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0326291 RchiOBHm_Chr1g0328921 RchiOBHm_Chr5g0055391
rosa_laevigata	RLG00000014258 RLG00000029297
rosa_multiflora	Rmu_sc0002986.1_g000011
rosa_roxburghii	Rroxscaffold_7G00195160
rosa_samantha	Rh1DG282800 Rh2BG253500 Rh2BG386300 Rh2BG559700 Rh2DG112600 Rh3DG364300 Rh4CG183600 Rh4DG261400 Rh5BG325500 Rh5DG123300 Rh5DG336400 Rh6AG394900 Rh7AG145900
rosa_wichuraiana	Rw6G034550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	106
AccII	CGCG	1 cut(s)	412
AclWI	GGATC	2 cut(s)	56, 364
AcsI	RAATTY	4 cut(s)	12, 270, 311, 352
AfaI	GTAC	1 cut(s)	248
AgsI	TTSAA	1 cut(s)	196
AjnI	CCWGG	1 cut(s)	109
AluBI	AGCT	4 cut(s)	212, 241, 290, 343
AluI	AGCT	4 cut(s)	212, 241, 290, 343
AlwI	GGATC	2 cut(s)	56, 364
AoxI	GGCC	1 cut(s)	49
ApaI	GGGCCC	1 cut(s)	53
ApoI	RAATTY	4 cut(s)	12, 270, 311, 352
Asp700I	GAANNNNTTC	2 cut(s)	200, 352
AspLEI	GCGC	1 cut(s)	412
AspS9I	GGNCC	2 cut(s)	49, 50
AsuHPI	GGTGA	1 cut(s)	347
BaeGI	GKGCMC	1 cut(s)	53
BanI	GGYRCC	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	386
BccI	CCATC	1 cut(s)	97
BciT130I	CCWGG	1 cut(s)	111
BfaI	CTAG	1 cut(s)	407
BmcAI	AGTACT	1 cut(s)	248
Bme1390I	CCNGG	1 cut(s)	111
BmgT120I	GGNCC	2 cut(s)	49, 50
BmiI	GGNNCC	3 cut(s)	50, 51, 108
BmrFI	CCNGG	1 cut(s)	111
BpiI	GAAGAC	1 cut(s)	386
BpuEI	CTTGAG	1 cut(s)	263
Bse1I	ACTGG	2 cut(s)	152, 254
BseBI	CCWGG	1 cut(s)	111
BseGI	GGATG	2 cut(s)	70, 108
BseMII	CTCAG	1 cut(s)	209
BseNI	ACTGG	2 cut(s)	152, 254
BseSI	GKGCMC	1 cut(s)	53
Bsh1236I	CGCG	1 cut(s)	412
BshFI	GGCC	1 cut(s)	51
BshNI	GGYRCC	1 cut(s)	106
BslFI	GGGAC	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	51
Bsp120I	GGGCCC	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	2 cut(s)	61, 369
BspANI	GGCC	1 cut(s)	51
BspCNI	CTCAG	1 cut(s)	210
BspFNI	CGCG	1 cut(s)	412
BspLI	GGNNCC	3 cut(s)	50, 51, 108
BspPI	GGATC	2 cut(s)	56, 364
BspT107I	GGYRCC	1 cut(s)	106
BsrI	ACTGG	2 cut(s)	152, 254
BssMI	GATC	2 cut(s)	61, 369
Bst2UI	CCWGG	1 cut(s)	111
Bst6I	CTCTTC	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	292
BstDEI	CTNAG	3 cut(s)	218, 237, 344
BstF5I	GGATG	2 cut(s)	70, 108
BstFNI	CGCG	1 cut(s)	412
BstHHI	GCGC	1 cut(s)	412
BstKTI	GATC	2 cut(s)	64, 372
BstMBI	GATC	2 cut(s)	61, 369
BstMWI	GCNNNNNNNGC	1 cut(s)	238
BstNI	CCWGG	1 cut(s)	111
BstSCI	CCNGG	1 cut(s)	109
BstSLI	GKGCMC	1 cut(s)	53
BstUI	CGCG	1 cut(s)	412
BstV2I	GAAGAC	1 cut(s)	386
BstX2I	RGATCY	1 cut(s)	369
BstYI	RGATCY	1 cut(s)	369
BsuRI	GGCC	1 cut(s)	51
BtsCI	GGATG	2 cut(s)	70, 108
BtsIMutI	CAGTG	1 cut(s)	215
Cac8I	GCNNGC	1 cut(s)	292
CfoI	GCGC	1 cut(s)	412
Cfr13I	GGNCC	2 cut(s)	49, 50
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	2 cut(s)	164, 364
CviJI	RGCY	8 cut(s)	51, 114, 212, 241, 290, 294, 343, 404
CviKI_1	RGCY	8 cut(s)	51, 114, 212, 241, 290, 294, 343, 404
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	3 cut(s)	218, 237, 344
DpnI	GATC	2 cut(s)	63, 371
DpnII	GATC	2 cut(s)	61, 369
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Eco24I	GRGCYC	1 cut(s)	53
EcoO109I	RGGNCCY	1 cut(s)	49
EcoRI	GAATTC	1 cut(s)	352
EcoRII	CCWGG	1 cut(s)	109
EcoT38I	GRGCYC	1 cut(s)	53
FaeI	CATG	2 cut(s)	167, 367
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	2 cut(s)	163, 363
FauNDI	CATATG	1 cut(s)	157
FokI	GGATG	2 cut(s)	57, 115
FriOI	GRGCYC	1 cut(s)	53
FspBI	CTAG	1 cut(s)	407
GlaI	GCGC	1 cut(s)	411
HaeIII	GGCC	1 cut(s)	51
HhaI	GCGC	1 cut(s)	412
Hin1II	CATG	2 cut(s)	167, 367
Hin6I	GCGC	1 cut(s)	410
HinP1I	GCGC	1 cut(s)	410
HindIII	AAGCTT	1 cut(s)	239
HphI	GGTGA	1 cut(s)	347
Hpy188I	TCNGA	1 cut(s)	358
HpyAV	CCTTC	4 cut(s)	211, 243, 317, 342
HpyCH4V	TGCA	1 cut(s)	163
HpyF10VI	GCNNNNNNNGC	1 cut(s)	238
HpyF3I	CTNAG	3 cut(s)	218, 237, 344
Hsp92II	CATG	2 cut(s)	167, 367
HspAI	GCGC	1 cut(s)	410
Kzo9I	GATC	2 cut(s)	61, 369
LmnI	GCTCC	1 cut(s)	217
LpnPI	CCDG	6 cut(s)	96, 123, 133, 153, 235, 276
MaeI	CTAG	1 cut(s)	407
MalI	GATC	2 cut(s)	63, 371
MboI	GATC	2 cut(s)	61, 369
MboII	GAAGA	4 cut(s)	53, 98, 104, 391
MflI	RGATCY	1 cut(s)	369
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	6 cut(s)	12, 125, 270, 302, 311, 352
MnlI	CCTC	5 cut(s)	39, 75, 160, 169, 325
MroXI	GAANNNNTTC	2 cut(s)	200, 352
MseI	TTAA	1 cut(s)	309
MspR9I	CCNGG	1 cut(s)	111
MvaI	CCWGG	1 cut(s)	111
MvnI	CGCG	1 cut(s)	412
MwoI	GCNNNNNNNGC	1 cut(s)	238
NdeI	CATATG	1 cut(s)	157
NdeII	GATC	2 cut(s)	61, 369
NlaIII	CATG	2 cut(s)	167, 367
NlaIV	GGNNCC	3 cut(s)	50, 51, 108
PdmI	GAANNNNTTC	2 cut(s)	200, 352
Psp6I	CCWGG	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	3 cut(s)	50, 51, 108
PspOMI	GGGCCC	1 cut(s)	49
PspPI	GGNCC	2 cut(s)	49, 50
PsuI	RGATCY	1 cut(s)	369
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SaqAI	TTAA	1 cut(s)	309
Sau3AI	GATC	2 cut(s)	61, 369
Sau96I	GGNCC	2 cut(s)	49, 50
ScaI	AGTACT	1 cut(s)	248
ScrFI	CCNGG	1 cut(s)	111
SduI	GDGCHC	1 cut(s)	53
SetI	ASST	7 cut(s)	171, 214, 229, 243, 292, 345, 398
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	6 cut(s)	12, 125, 270, 302, 311, 352
SspMI	CTAG	1 cut(s)	407
StyD4I	CCNGG	1 cut(s)	109
TasI	AATT	6 cut(s)	12, 125, 270, 302, 311, 352
TatI	WGTACW	1 cut(s)	246
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	1 cut(s)	222
TspDTI	ATGAA	5 cut(s)	99, 105, 106, 147, 263
TspRI	CASTG	1 cut(s)	222
XapI	RAATTY	4 cut(s)	12, 270, 311, 352
XmnI	GAANNNNTTC	2 cut(s)	200, 352
XspI	CTAG	1 cut(s)	407
ZrmI	AGTACT	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.