Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0010616

Physical Location & Seq

Genomic Coordinates Forward (+)

26172281 .. 26198492

Gene Structure 26212 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG253500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGCTCGTGGTGTTTATGAACACCGATTCTTCACCGATTAAGGGTTCGCTGGAAGACGAAGAGAACCTTGTTGGAGCAGTGAAGCAAGTTGATGTTGTGATTTGTGCTGTTCAGGTCAAACAGGTTAGGGATTTGGGGAAACCTAATTGGGTTGTACAAGATTCATTCGAATCTCCTGAAGAAGGAAGACTTCCAGATGTCAAAAAAGTGGTTAGGGAAGAGAGGGGCCCGTATAGTGATCCTCAACATCCCTATTTCTATGAAGATGAAGATGTTTGGATGGCACCAGGCTTCATAAACCAATTCTATGAAGTCCCTGATTACTGGAAAACATATGTGCATGAGGTTGATGAGGAAAGGGAAATGTGGTTGAACTCCTTCTATAAAGCTCCACTGAGAATACCTATGCCTTCTGAGCTTGAGTACTGGTGGTCAAAGGGAAGCAAAATTCATAAGACATATAAAGCTGGCTTTTGGGAATCGATTAAATCTGGGAGAGAAGGATTGGAGGGTGATGAGCTAAGAAGGAATTCTGATGTCATGGAGATCCTAAAGAAGACAAGTTTCCAAAGGACAAGGTTGCACCGATGTAATGGTACCCATGATCACAGGAATATAGCATTTCCGGCTTATAAAGCTTTTCAGGCTATCGCGCTACTAAAGATAATGGCACCTTCTACGCGAAGACCTTCATCTCAAGCAGTAGCAATGGCCAAAAGAATGAGGGAAATTCAGCTGAGAGGGACAAGGTCTAGCAATACCAAGCGATCCAATGGAGCAACATCAAGGGGAATTTCAGTACAAGCTGCATCAAAGTTGTCATTGAAACGACAAAAGAGATTGAAGGAATTCGATATATGTTATTCTTCAAATAGGGAAGTAGAATTAAGAGGCAAAGTTCTAACACATCATAAACACGGTGCCGAAATAGCCAACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0006996 GO:0007275 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009658 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0022414 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034357 GO:0034613 GO:0042170 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0061458 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MORN

Protein Analysis

313

Amino Acids

36.23

Weight (kDa)

9.21

Isoelectric Point (pI)

48.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010616)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0326291 RchiOBHm_Chr1g0328921 RchiOBHm_Chr5g0055391
rosa_laevigata	RLG00000014258 RLG00000029297
rosa_multiflora	Rmu_sc0002986.1_g000011
rosa_roxburghii	Rroxscaffold_7G00195160
rosa_samantha	Rh1DG282800 Rh2BG253500 Rh2BG386300 Rh2BG559700 Rh2DG112600 Rh3DG364300 Rh4CG183600 Rh4DG261400 Rh5BG325500 Rh5DG123300 Rh5DG336400 Rh6AG394900 Rh7AG145900
rosa_wichuraiana	Rw6G034550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	633
Acc65I	GGTACC	1 cut(s)	596
AccB1I	GGYRCC	4 cut(s)	283, 596, 670, 920
AccII	CGCG	2 cut(s)	653, 682
AclWI	GGATC	3 cut(s)	233, 541, 762
AcoI	YGGCCR	1 cut(s)	711
AcsI	RAATTY	5 cut(s)	447, 529, 729, 792, 848
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	4 cut(s)	156, 425, 598, 801
AfiI	CCNNNNNNNGG	2 cut(s)	41, 182
AgsI	TTSAA	4 cut(s)	373, 826, 844, 870
AjnI	CCWGG	1 cut(s)	286
AluBI	AGCT	7 cut(s)	389, 418, 467, 520, 638, 736, 806
AluI	AGCT	7 cut(s)	389, 418, 467, 520, 638, 736, 806
AlwI	GGATC	3 cut(s)	233, 541, 762
AoxI	GGCC	2 cut(s)	226, 711
ApaI	GGGCCC	1 cut(s)	230
ApeKI	GCWGC	1 cut(s)	806
ApoI	RAATTY	5 cut(s)	447, 529, 729, 792, 848
Asp700I	GAANNNNTTC	4 cut(s)	377, 529, 688, 848
Asp718I	GGTACC	1 cut(s)	596
AspLEI	GCGC	1 cut(s)	655
AspS9I	GGNCC	2 cut(s)	226, 227
AsuHPI	GGTGA	2 cut(s)	24, 524
AsuII	TTCGAA	1 cut(s)	168
BaeGI	GKGCMC	1 cut(s)	230
BalI	TGGCCA	1 cut(s)	713
BanI	GGYRCC	4 cut(s)	283, 596, 670, 920
BanII	GRGCYC	1 cut(s)	230
BauI	CACGAG	1 cut(s)	5
BbsI	GAAGAC	4 cut(s)	60, 193, 563, 691
BbvI	GCAGC	1 cut(s)	793
BccI	CCATC	1 cut(s)	274
BciT130I	CCWGG	1 cut(s)	288
BclI	TGATCA	1 cut(s)	604
BfaI	CTAG	1 cut(s)	753
BisI	GCNGC	1 cut(s)	807
BlsI	GCNGC	1 cut(s)	808
BmcAI	AGTACT	1 cut(s)	425
Bme1390I	CCNGG	1 cut(s)	288
BmgT120I	GGNCC	2 cut(s)	226, 227
BmiI	GGNNCC	6 cut(s)	227, 228, 285, 598, 672, 922
BmrFI	CCNGG	1 cut(s)	288
BmsI	GCATC	1 cut(s)	818
BpiI	GAAGAC	4 cut(s)	60, 193, 563, 691
Bpu14I	TTCGAA	1 cut(s)	168
BpuEI	CTTGAG	2 cut(s)	440, 681
Bsa29I	ATCGAT	1 cut(s)	482
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 182
Bse1I	ACTGG	2 cut(s)	329, 431
Bse3DI	GCAATG	1 cut(s)	714
BseBI	CCWGG	1 cut(s)	288
BseCI	ATCGAT	1 cut(s)	482
BseGI	GGATG	2 cut(s)	247, 285
BseLI	CCNNNNNNNGG	2 cut(s)	41, 182
BseMI	GCAATG	1 cut(s)	714
BseMII	CTCAG	3 cut(s)	386, 405, 728
BseNI	ACTGG	2 cut(s)	329, 431
BseSI	GKGCMC	1 cut(s)	230
BseXI	GCAGC	1 cut(s)	793
Bsh1236I	CGCG	2 cut(s)	653, 682
BshFI	GGCC	2 cut(s)	228, 713
BshNI	GGYRCC	4 cut(s)	283, 596, 670, 920
BshVI	ATCGAT	1 cut(s)	482
BsiSI	CCGG	1 cut(s)	626
BslFI	GGGAC	2 cut(s)	299, 757
BslI	CCNNNNNNNGG	2 cut(s)	41, 182
BsmFI	GGGAC	2 cut(s)	299, 757
BsnI	GGCC	2 cut(s)	228, 713
Bsp119I	TTCGAA	1 cut(s)	168
Bsp120I	GGGCCC	1 cut(s)	226
Bsp1286I	GDGCHC	1 cut(s)	230
Bsp1407I	TGTACA	1 cut(s)	154
Bsp143I	GATC	4 cut(s)	238, 546, 604, 767
BspANI	GGCC	2 cut(s)	228, 713
BspCNI	CTCAG	3 cut(s)	387, 406, 729
BspDI	ATCGAT	1 cut(s)	482
BspFNI	CGCG	2 cut(s)	653, 682
BspLI	GGNNCC	6 cut(s)	227, 228, 285, 598, 672, 922
BspPI	GGATC	3 cut(s)	233, 541, 762
BspT104I	TTCGAA	1 cut(s)	168
BspT107I	GGYRCC	4 cut(s)	283, 596, 670, 920
BsrDI	GCAATG	1 cut(s)	714
BsrGI	TGTACA	1 cut(s)	154
BsrI	ACTGG	2 cut(s)	329, 431
BssMI	GATC	4 cut(s)	238, 546, 604, 767
BssSI	CACGAG	1 cut(s)	5
Bst2BI	CACGAG	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	1 cut(s)	920
Bst6I	CTCTTC	2 cut(s)	54, 213
BstAUI	TGTACA	1 cut(s)	154
BstBI	TTCGAA	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	469
BstDEI	CTNAG	4 cut(s)	395, 414, 521, 737
BstENI	CCTNNNNNAGG	1 cut(s)	180
BstF5I	GGATG	2 cut(s)	247, 285
BstFNI	CGCG	2 cut(s)	653, 682
BstHHI	GCGC	1 cut(s)	655
BstKTI	GATC	4 cut(s)	241, 549, 607, 770
BstMBI	GATC	4 cut(s)	238, 546, 604, 767
BstMWI	GCNNNNNNNGC	5 cut(s)	415, 626, 635, 644, 929
BstNI	CCWGG	1 cut(s)	288
BstSCI	CCNGG	1 cut(s)	286
BstSLI	GKGCMC	1 cut(s)	230
BstUI	CGCG	2 cut(s)	653, 682
BstV1I	GCAGC	1 cut(s)	793
BstV2I	GAAGAC	4 cut(s)	60, 193, 563, 691
BstX2I	RGATCY	1 cut(s)	546
BstYI	RGATCY	1 cut(s)	546
Bsu15I	ATCGAT	1 cut(s)	482
BsuRI	GGCC	2 cut(s)	228, 713
BsuTUI	ATCGAT	1 cut(s)	482
BtsCI	GGATG	2 cut(s)	247, 285
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	2 cut(s)	84, 392
Cac8I	GCNNGC	1 cut(s)	469
CfoI	GCGC	1 cut(s)	655
Cfr13I	GGNCC	2 cut(s)	226, 227
ClaI	ATCGAT	1 cut(s)	482
Csp6I	GTAC	4 cut(s)	155, 424, 597, 800
CviAII	CATG	3 cut(s)	341, 541, 602
CviQI	GTAC	4 cut(s)	155, 424, 597, 800
DdeI	CTNAG	4 cut(s)	395, 414, 521, 737
DpnI	GATC	4 cut(s)	240, 548, 606, 769
DpnII	GATC	4 cut(s)	238, 546, 604, 767
EaeI	YGGCCR	1 cut(s)	711
Eam1104I	CTCTTC	2 cut(s)	54, 213
EarI	CTCTTC	2 cut(s)	54, 213
Eco24I	GRGCYC	1 cut(s)	230
Eco57I	CTGAAG	1 cut(s)	198
EcoNI	CCTNNNNNAGG	1 cut(s)	180
EcoO109I	RGGNCCY	1 cut(s)	226
EcoRI	GAATTC	2 cut(s)	529, 848
EcoRII	CCWGG	1 cut(s)	286
EcoT38I	GRGCYC	1 cut(s)	230
FaeI	CATG	3 cut(s)	344, 544, 605
FalI	AAGNNNNNCTT	4 cut(s)	51, 83, 174, 206
FaqI	GGGAC	2 cut(s)	299, 757
FatI	CATG	3 cut(s)	340, 540, 601
FauNDI	CATATG	1 cut(s)	334
FbaI	TGATCA	1 cut(s)	604
Fnu4HI	GCNGC	1 cut(s)	807
FokI	GGATG	2 cut(s)	234, 292
FriOI	GRGCYC	1 cut(s)	230
Fsp4HI	GCNGC	1 cut(s)	807
FspBI	CTAG	1 cut(s)	753
GlaI	GCGC	1 cut(s)	654
GluI	GCNGC	1 cut(s)	807
HaeIII	GGCC	2 cut(s)	228, 713
HapII	CCGG	1 cut(s)	626
HhaI	GCGC	1 cut(s)	655
Hin1II	CATG	3 cut(s)	344, 544, 605
Hin6I	GCGC	1 cut(s)	653
HinP1I	GCGC	1 cut(s)	653
HindIII	AAGCTT	1 cut(s)	636
HinfI	GANTC	4 cut(s)	26, 161, 170, 479
HpaII	CCGG	1 cut(s)	626
HphI	GGTGA	2 cut(s)	24, 524
Hpy188I	TCNGA	2 cut(s)	415, 535
Hpy188III	TCNNGA	2 cut(s)	176, 194
HpyAV	CCTTC	8 cut(s)	176, 388, 420, 494, 519, 684, 699, 838
HpyCH4III	ACNGT	1 cut(s)	920
HpyCH4V	TGCA	3 cut(s)	340, 583, 809
HpyF10VI	GCNNNNNNNGC	5 cut(s)	415, 626, 635, 644, 929
HpyF3I	CTNAG	4 cut(s)	395, 414, 521, 737
Hsp92II	CATG	3 cut(s)	344, 544, 605
HspAI	GCGC	1 cut(s)	653
KpnI	GGTACC	1 cut(s)	600
Ksp22I	TGATCA	1 cut(s)	604
Kzo9I	GATC	4 cut(s)	238, 546, 604, 767
LmnI	GCTCC	3 cut(s)	74, 394, 776
Lsp1109I	GCAGC	1 cut(s)	793
LweI	GCATC	1 cut(s)	818
MaeI	CTAG	1 cut(s)	753
MalI	GATC	4 cut(s)	240, 548, 606, 769
MboI	GATC	4 cut(s)	238, 546, 604, 767
MflI	RGATCY	1 cut(s)	546
MhlI	GDGCHC	1 cut(s)	230
MlsI	TGGCCA	1 cut(s)	713
MluCI	AATT	8 cut(s)	145, 302, 447, 529, 729, 792, 848, 884
MluNI	TGGCCA	1 cut(s)	713
MmeI	TCCRAC	1 cut(s)	52
MnlI	CCTC	8 cut(s)	216, 252, 337, 346, 502, 717, 734, 884
Mox20I	TGGCCA	1 cut(s)	713
MroXI	GAANNNNTTC	4 cut(s)	377, 529, 688, 848
MscI	TGGCCA	1 cut(s)	713
MseI	TTAA	3 cut(s)	39, 486, 887
Msp20I	TGGCCA	1 cut(s)	713
MspA1I	CMGCKG	1 cut(s)	736
MspI	CCGG	1 cut(s)	626
MspR9I	CCNGG	1 cut(s)	288
MvaI	CCWGG	1 cut(s)	288
MvnI	CGCG	2 cut(s)	653, 682
MwoI	GCNNNNNNNGC	5 cut(s)	415, 626, 635, 644, 929
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	4 cut(s)	238, 546, 604, 767
NlaIII	CATG	3 cut(s)	344, 544, 605
NlaIV	GGNNCC	6 cut(s)	227, 228, 285, 598, 672, 922
NspV	TTCGAA	1 cut(s)	168
PdmI	GAANNNNTTC	4 cut(s)	377, 529, 688, 848
PfeI	GAWTC	4 cut(s)	26, 161, 170, 479
PflFI	GACNNNGTC	1 cut(s)	748
PkrI	GCNGC	1 cut(s)	808
PsiI	TTATAA	1 cut(s)	633
Psp6I	CCWGG	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	286
PspN4I	GGNNCC	6 cut(s)	227, 228, 285, 598, 672, 922
PspOMI	GGGCCC	1 cut(s)	226
PspPI	GGNCC	2 cut(s)	226, 227
PsuI	RGATCY	1 cut(s)	546
PsyI	GACNNNGTC	1 cut(s)	748
PvuII	CAGCTG	1 cut(s)	736
RsaI	GTAC	4 cut(s)	156, 425, 598, 801
RsaNI	GTAC	4 cut(s)	155, 424, 597, 800
SaqAI	TTAA	3 cut(s)	39, 486, 887
SatI	GCNGC	1 cut(s)	807
Sau3AI	GATC	4 cut(s)	238, 546, 604, 767
Sau96I	GGNCC	2 cut(s)	226, 227
ScaI	AGTACT	1 cut(s)	425
ScrFI	CCNGG	1 cut(s)	288
SduI	GDGCHC	1 cut(s)	230
SfaNI	GCATC	1 cut(s)	818
SfuI	TTCGAA	1 cut(s)	168
SmlI	CTYRAG	2 cut(s)	419, 696
SmoI	CTYRAG	2 cut(s)	419, 696
Sse9I	AATT	8 cut(s)	145, 302, 447, 529, 729, 792, 848, 884
SspMI	CTAG	1 cut(s)	753
StyD4I	CCNGG	1 cut(s)	286
TaaI	ACNGT	1 cut(s)	920
TaqI	TCGA	3 cut(s)	168, 482, 852
TasI	AATT	8 cut(s)	145, 302, 447, 529, 729, 792, 848, 884
TatI	WGTACW	3 cut(s)	154, 423, 799
TfiI	GAWTC	4 cut(s)	26, 161, 170, 479
Tru1I	TTAA	3 cut(s)	39, 486, 887
Tru9I	TTAA	3 cut(s)	39, 486, 887
TscAI	CASTG	2 cut(s)	84, 399
TseI	GCWGC	1 cut(s)	806
TspDTI	ATGAA	8 cut(s)	32, 153, 276, 282, 283, 324, 440, 681
TspRI	CASTG	2 cut(s)	84, 399
Tth111I	GACNNNGTC	1 cut(s)	748
XagI	CCTNNNNNAGG	1 cut(s)	180
XapI	RAATTY	5 cut(s)	447, 529, 729, 792, 848
XmnI	GAANNNNTTC	4 cut(s)	377, 529, 688, 848
XspI	CTAG	1 cut(s)	753
ZrmI	AGTACT	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.