Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0010616

Physical Location & Seq

Genomic Coordinates Reverse (-)

11200397 .. 11202999

Gene Structure 2603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG123300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGTCGTGTCACTATCCATCGCCGTCGCTAGAATATATAGAGAGAGTAAAATAACAGCCAAGGTCCCTGATTACTGGAAAACATATGTGCATGAGGTTGATGAGGAAAGGGAAATGTGGTTGAACTCCTTCTATAAAGCTCCACTGAGAATACCTATGCCTTCTGAGCTTGAGTACTGGTGGTCAAAGGGAAGCAAAATTCATAAGACATATAAAGCTGGCTTTTGGGAATCGATTAAATCTGGGAGAGAAGGATTGGAGGGTGATGAGCTAAGAAGGAATTCTGATGTCATGGAGATCCTAAAGAAGACAAGTTTCCAAAGGTTATTGGCTCTAGCGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0006996 GO:0007275 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009658 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0022414 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034357 GO:0034613 GO:0042170 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0061458 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MORN

Protein Analysis

114

Amino Acids

13.5

Weight (kDa)

9.33

Isoelectric Point (pI)

36.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010616)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0326291 RchiOBHm_Chr1g0328921 RchiOBHm_Chr5g0055391
rosa_laevigata	RLG00000014258 RLG00000029297
rosa_multiflora	Rmu_sc0002986.1_g000011
rosa_roxburghii	Rroxscaffold_7G00195160
rosa_samantha	Rh1DG282800 Rh2BG253500 Rh2BG386300 Rh2BG559700 Rh2DG112600 Rh3DG364300 Rh4CG183600 Rh4DG261400 Rh5BG325500 Rh5DG123300 Rh5DG336400 Rh6AG394900 Rh7AG145900
rosa_wichuraiana	Rw6G034550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	340
AclWI	GGATC	1 cut(s)	292
AcsI	RAATTY	2 cut(s)	198, 280
AfaI	GTAC	1 cut(s)	176
AgsI	TTSAA	1 cut(s)	124
AluBI	AGCT	4 cut(s)	140, 169, 218, 271
AluI	AGCT	4 cut(s)	140, 169, 218, 271
AlwI	GGATC	1 cut(s)	292
ApoI	RAATTY	2 cut(s)	198, 280
Asp700I	GAANNNNTTC	2 cut(s)	128, 280
AspLEI	GCGC	1 cut(s)	340
AspS9I	GGNCC	1 cut(s)	64
AsuHPI	GGTGA	1 cut(s)	275
AvaII	GGWCC	1 cut(s)	64
BbsI	GAAGAC	1 cut(s)	314
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	1 cut(s)	8
BfaI	CTAG	2 cut(s)	30, 335
BmcAI	AGTACT	1 cut(s)	176
Bme18I	GGWCC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	1 cut(s)	66
BpiI	GAAGAC	1 cut(s)	314
BpuEI	CTTGAG	1 cut(s)	191
Bsa29I	ATCGAT	1 cut(s)	233
BsaJI	CCNNGG	1 cut(s)	60
Bse1I	ACTGG	2 cut(s)	80, 182
BseCI	ATCGAT	1 cut(s)	233
BseDI	CCNNGG	1 cut(s)	60
BseMII	CTCAG	2 cut(s)	137, 156
BseNI	ACTGG	2 cut(s)	80, 182
Bsh1236I	CGCG	1 cut(s)	340
BshVI	ATCGAT	1 cut(s)	233
BslFI	GGGAC	1 cut(s)	50
BsmFI	GGGAC	1 cut(s)	50
Bsp143I	GATC	1 cut(s)	297
BspCNI	CTCAG	2 cut(s)	138, 157
BspDI	ATCGAT	1 cut(s)	233
BspFNI	CGCG	1 cut(s)	340
BspLI	GGNNCC	1 cut(s)	66
BspPI	GGATC	1 cut(s)	292
BsrI	ACTGG	2 cut(s)	80, 182
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	1 cut(s)	297
BssT1I	CCWWGG	1 cut(s)	60
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	3 cut(s)	146, 165, 272
BstFNI	CGCG	1 cut(s)	340
BstHHI	GCGC	1 cut(s)	340
BstKTI	GATC	1 cut(s)	300
BstMBI	GATC	1 cut(s)	297
BstMWI	GCNNNNNNNGC	1 cut(s)	166
BstUI	CGCG	1 cut(s)	340
BstV2I	GAAGAC	1 cut(s)	314
BstX2I	RGATCY	1 cut(s)	297
BstYI	RGATCY	1 cut(s)	297
Bsu15I	ATCGAT	1 cut(s)	233
BsuTUI	ATCGAT	1 cut(s)	233
BtgZI	GCGATG	1 cut(s)	4
BtsIMutI	CAGTG	1 cut(s)	143
Cac8I	GCNNGC	1 cut(s)	220
CfoI	GCGC	1 cut(s)	340
Cfr13I	GGNCC	1 cut(s)	64
ClaI	ATCGAT	1 cut(s)	233
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	2 cut(s)	92, 292
CviJI	RGCY	7 cut(s)	59, 140, 169, 218, 222, 271, 332
CviKI_1	RGCY	7 cut(s)	59, 140, 169, 218, 222, 271, 332
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	3 cut(s)	146, 165, 272
DpnI	GATC	1 cut(s)	299
DpnII	GATC	1 cut(s)	297
Eco130I	CCWWGG	1 cut(s)	60
Eco47I	GGWCC	1 cut(s)	64
EcoO109I	RGGNCCY	1 cut(s)	64
EcoRI	GAATTC	1 cut(s)	280
EcoT14I	CCWWGG	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	2 cut(s)	95, 295
FaqI	GGGAC	1 cut(s)	50
FatI	CATG	2 cut(s)	91, 291
FauNDI	CATATG	1 cut(s)	85
FspBI	CTAG	2 cut(s)	30, 335
GlaI	GCGC	1 cut(s)	339
HhaI	GCGC	1 cut(s)	340
Hin1II	CATG	2 cut(s)	95, 295
Hin6I	GCGC	1 cut(s)	338
HinP1I	GCGC	1 cut(s)	338
HinfI	GANTC	1 cut(s)	230
HphI	GGTGA	1 cut(s)	275
Hpy188I	TCNGA	2 cut(s)	166, 286
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	4 cut(s)	139, 171, 245, 270
HpyCH4V	TGCA	1 cut(s)	91
HpyF10VI	GCNNNNNNNGC	1 cut(s)	166
HpyF3I	CTNAG	3 cut(s)	146, 165, 272
Hsp92II	CATG	2 cut(s)	95, 295
HspAI	GCGC	1 cut(s)	338
Kzo9I	GATC	1 cut(s)	297
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	5 cut(s)	61, 81, 163, 204, 228
MaeI	CTAG	2 cut(s)	30, 335
MaeIII	GTNAC	1 cut(s)	9
MalI	GATC	1 cut(s)	299
MboI	GATC	1 cut(s)	297
MboII	GAAGA	1 cut(s)	319
MflI	RGATCY	1 cut(s)	297
MluCI	AATT	2 cut(s)	198, 280
MnlI	CCTC	3 cut(s)	88, 97, 253
MroXI	GAANNNNTTC	2 cut(s)	128, 280
MseI	TTAA	1 cut(s)	237
MvnI	CGCG	1 cut(s)	340
MwoI	GCNNNNNNNGC	1 cut(s)	166
NdeI	CATATG	1 cut(s)	85
NdeII	GATC	1 cut(s)	297
NlaIII	CATG	2 cut(s)	95, 295
NlaIV	GGNNCC	1 cut(s)	66
NmuCI	GTSAC	1 cut(s)	9
PdmI	GAANNNNTTC	2 cut(s)	128, 280
PfeI	GAWTC	1 cut(s)	230
PpuMI	RGGWCCY	1 cut(s)	64
Psp5II	RGGWCCY	1 cut(s)	64
PspN4I	GGNNCC	1 cut(s)	66
PspPI	GGNCC	1 cut(s)	64
PspPPI	RGGWCCY	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	297
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SaqAI	TTAA	1 cut(s)	237
Sau3AI	GATC	1 cut(s)	297
Sau96I	GGNCC	1 cut(s)	64
ScaI	AGTACT	1 cut(s)	176
SetI	ASST	8 cut(s)	66, 99, 142, 157, 171, 220, 273, 326
SinI	GGWCC	1 cut(s)	64
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	2 cut(s)	198, 280
SspMI	CTAG	2 cut(s)	30, 335
StyI	CCWWGG	1 cut(s)	60
TaqI	TCGA	1 cut(s)	233
TasI	AATT	2 cut(s)	198, 280
TatI	WGTACW	1 cut(s)	174
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	1 cut(s)	150
TseFI	GTSAC	1 cut(s)	9
Tsp45I	GTSAC	1 cut(s)	9
TspDTI	ATGAA	1 cut(s)	191
TspRI	CASTG	1 cut(s)	150
VpaK11BI	GGWCC	1 cut(s)	64
XapI	RAATTY	2 cut(s)	198, 280
XmnI	GAANNNNTTC	2 cut(s)	128, 280
XspI	CTAG	2 cut(s)	30, 335
ZrmI	AGTACT	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.