Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0010616

Physical Location & Seq

Genomic Coordinates Reverse (-)

59099543 .. 59100040

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G034550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGACCCATTCACCTTTTGGATACTGTTTGACCCCTTCTTGGTTCATGATTATTGGAATTTTTGTTTCCTTTATAGTGGTTAGGGAAGAGAGGGGCCCGTATAGTGATCCTCAACATCCCTATTTCTATGAAGATGAAGATGTTTGGATGGCACCAGGCTTCATAAACCAATTCTATGAAGTCCCTGATTACTGGAAAACATATGTGCATGAGGTTGATGAGGAAAGGGAAATGTGGTTGAACTCCTTCTATAAAGCTCCACTGAGAATACCTATGCCTTCTGAGCTTGAGTACTGGTGGTCAAAGGGTATTAATTTCTGTGAGCTACAATGGAAAAGTTTTAAGTTTTTTCTTATTTTTGTTTGCAGGAAGCAAAATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0006996 GO:0007275 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009658 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0022414 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034357 GO:0034613 GO:0042170 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0061458 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MORN

Protein Analysis

127

Amino Acids

15.59

Weight (kDa)

4.98

Isoelectric Point (pI)

42.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010616)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0326291 RchiOBHm_Chr1g0328921 RchiOBHm_Chr5g0055391
rosa_laevigata	RLG00000014258 RLG00000029297
rosa_multiflora	Rmu_sc0002986.1_g000011
rosa_roxburghii	Rroxscaffold_7G00195160
rosa_samantha	Rh1DG282800 Rh2BG253500 Rh2BG386300 Rh2BG559700 Rh2DG112600 Rh3DG364300 Rh4CG183600 Rh4DG261400 Rh5BG325500 Rh5DG123300 Rh5DG336400 Rh6AG394900 Rh7AG145900
rosa_wichuraiana	Rw6G034550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	151
AclWI	GGATC	1 cut(s)	101
AcsI	RAATTY	2 cut(s)	57, 376
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	1 cut(s)	39
AgsI	TTSAA	1 cut(s)	241
AjnI	CCWGG	1 cut(s)	154
AluBI	AGCT	3 cut(s)	257, 286, 325
AluI	AGCT	3 cut(s)	257, 286, 325
AlwI	GGATC	1 cut(s)	101
AoxI	GGCC	1 cut(s)	94
ApaI	GGGCCC	1 cut(s)	98
ApoI	RAATTY	2 cut(s)	57, 376
AseI	ATTAAT	1 cut(s)	312
Asp700I	GAANNNNTTC	1 cut(s)	245
AspS9I	GGNCC	2 cut(s)	94, 95
AsuHPI	GGTGA	1 cut(s)	3
BaeGI	GKGCMC	1 cut(s)	98
BanI	GGYRCC	1 cut(s)	151
BanII	GRGCYC	1 cut(s)	98
BccI	CCATC	1 cut(s)	142
BciT130I	CCWGG	1 cut(s)	156
BciVI	GTATCC	1 cut(s)	14
BfuI	GTATCC	1 cut(s)	14
BmcAI	AGTACT	1 cut(s)	293
Bme1390I	CCNGG	1 cut(s)	156
BmgT120I	GGNCC	2 cut(s)	94, 95
BmiI	GGNNCC	3 cut(s)	95, 96, 153
BmrFI	CCNGG	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	308
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
Bse1I	ACTGG	2 cut(s)	197, 299
BseBI	CCWGG	1 cut(s)	156
BseGI	GGATG	2 cut(s)	115, 153
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseMII	CTCAG	2 cut(s)	254, 273
BseNI	ACTGG	2 cut(s)	197, 299
BseSI	GKGCMC	1 cut(s)	98
BshFI	GGCC	1 cut(s)	96
BshNI	GGYRCC	1 cut(s)	151
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmFI	GGGAC	1 cut(s)	167
BsnI	GGCC	1 cut(s)	96
Bsp120I	GGGCCC	1 cut(s)	94
Bsp1286I	GDGCHC	1 cut(s)	98
Bsp143I	GATC	1 cut(s)	106
BspANI	GGCC	1 cut(s)	96
BspCNI	CTCAG	2 cut(s)	255, 274
BspHI	TCATGA	1 cut(s)	45
BspLI	GGNNCC	3 cut(s)	95, 96, 153
BspPI	GGATC	1 cut(s)	101
BspT107I	GGYRCC	1 cut(s)	151
BsrI	ACTGG	2 cut(s)	197, 299
BssMI	GATC	1 cut(s)	106
Bst2UI	CCWGG	1 cut(s)	156
Bst4CI	ACNGT	1 cut(s)	26
Bst6I	CTCTTC	1 cut(s)	81
BstDEI	CTNAG	2 cut(s)	263, 282
BstF5I	GGATG	2 cut(s)	115, 153
BstKTI	GATC	1 cut(s)	109
BstMBI	GATC	1 cut(s)	106
BstMWI	GCNNNNNNNGC	1 cut(s)	283
BstNI	CCWGG	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	154
BstSLI	GKGCMC	1 cut(s)	98
BsuI	GTATCC	1 cut(s)	14
BsuRI	GGCC	1 cut(s)	96
BtsCI	GGATG	2 cut(s)	115, 153
BtsIMutI	CAGTG	1 cut(s)	260
CciI	TCATGA	1 cut(s)	45
Cfr13I	GGNCC	2 cut(s)	94, 95
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	2 cut(s)	46, 209
CviJI	RGCY	5 cut(s)	96, 159, 257, 286, 325
CviKI_1	RGCY	5 cut(s)	96, 159, 257, 286, 325
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	2 cut(s)	263, 282
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
Eco24I	GRGCYC	1 cut(s)	98
EcoO109I	RGGNCCY	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	154
EcoT38I	GRGCYC	1 cut(s)	98
FaeI	CATG	2 cut(s)	49, 212
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	2 cut(s)	45, 208
FauNDI	CATATG	1 cut(s)	202
FokI	GGATG	2 cut(s)	102, 160
FriOI	GRGCYC	1 cut(s)	98
HaeIII	GGCC	1 cut(s)	96
Hin1II	CATG	2 cut(s)	49, 212
HphI	GGTGA	1 cut(s)	3
Hpy188I	TCNGA	1 cut(s)	283
Hpy188III	TCNNGA	1 cut(s)	46
HpyAV	CCTTC	3 cut(s)	45, 256, 288
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4V	TGCA	2 cut(s)	208, 366
HpyF10VI	GCNNNNNNNGC	1 cut(s)	283
HpyF3I	CTNAG	2 cut(s)	263, 282
Hsp92II	CATG	2 cut(s)	49, 212
Kzo9I	GATC	1 cut(s)	106
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	6 cut(s)	141, 168, 178, 198, 280, 352
MalI	GATC	1 cut(s)	108
MboI	GATC	1 cut(s)	106
MboII	GAAGA	3 cut(s)	98, 143, 149
MhlI	GDGCHC	1 cut(s)	98
MluCI	AATT	4 cut(s)	57, 170, 313, 376
MnlI	CCTC	4 cut(s)	84, 120, 205, 214
MroXI	GAANNNNTTC	1 cut(s)	245
MseI	TTAA	2 cut(s)	312, 342
MspR9I	CCNGG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	283
NdeI	CATATG	1 cut(s)	202
NdeII	GATC	1 cut(s)	106
NlaIII	CATG	2 cut(s)	49, 212
NlaIV	GGNNCC	3 cut(s)	95, 96, 153
PagI	TCATGA	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	245
PshBI	ATTAAT	1 cut(s)	312
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PspN4I	GGNNCC	3 cut(s)	95, 96, 153
PspOMI	GGGCCC	1 cut(s)	94
PspPI	GGNCC	2 cut(s)	94, 95
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
SaqAI	TTAA	2 cut(s)	312, 342
Sau3AI	GATC	1 cut(s)	106
Sau96I	GGNCC	2 cut(s)	94, 95
ScaI	AGTACT	1 cut(s)	293
ScrFI	CCNGG	1 cut(s)	156
SduI	GDGCHC	1 cut(s)	98
SetI	ASST	6 cut(s)	16, 216, 259, 274, 288, 327
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	4 cut(s)	57, 170, 313, 376
StyD4I	CCNGG	1 cut(s)	154
TaaI	ACNGT	1 cut(s)	26
TasI	AATT	4 cut(s)	57, 170, 313, 376
TatI	WGTACW	1 cut(s)	291
Tru1I	TTAA	2 cut(s)	312, 342
Tru9I	TTAA	2 cut(s)	312, 342
TscAI	CASTG	1 cut(s)	267
TspDTI	ATGAA	6 cut(s)	34, 144, 150, 151, 192, 369
TspRI	CASTG	1 cut(s)	267
VspI	ATTAAT	1 cut(s)	312
XapI	RAATTY	2 cut(s)	57, 376
XcmI	CCANNNNNNNNNTGG	1 cut(s)	14
XmnI	GAANNNNTTC	1 cut(s)	245
ZrmI	AGTACT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.