Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0010616

Physical Location & Seq

Genomic Coordinates Reverse (-)

45158424 .. 45159456

Gene Structure 1033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG336400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGCATTGGAATCTCCTGAAGAAGGAAGTTGTTAGATTCTTTTTAATTAACTTTGTTCTTTATAATCTTAATCAGGATTCATTCGAATCTCCTGAAGAAGGAAGACTTCCAGATGTCAAAAAAGTGGTTAGGGAAGAGAGGGGCCCGTATAGTGATCCTCAACATCCCTATTTCTATGAAGATGAAGATGTTTGGATGGCACCAGGCTTCATAAACCAATTCTATGAAGTCCCTGATTACTGGAAAACATATGTGCATGAGGTTGATGAGGAAAGGGAAATGTGGTTGAACTCCTTCTATAAAGCTCCACTGAGAATACCTATGCCTTCTGAGCTTGAGTACTGGTGGTCAAAGGGTATTAATTTCTGTGAGCTACAATGGAAAAGTTTTAAGTTTTTTCTTATTTTTGTTTGCAGGAAGCAAAATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0006996 GO:0007275 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009658 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0022414 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034357 GO:0034613 GO:0042170 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0061458 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MORN

Protein Analysis

143

Amino Acids

17.69

Weight (kDa)

5.12

Isoelectric Point (pI)

47.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010616)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0326291 RchiOBHm_Chr1g0328921 RchiOBHm_Chr5g0055391
rosa_laevigata	RLG00000014258 RLG00000029297
rosa_multiflora	Rmu_sc0002986.1_g000011
rosa_roxburghii	Rroxscaffold_7G00195160
rosa_samantha	Rh1DG282800 Rh2BG253500 Rh2BG386300 Rh2BG559700 Rh2DG112600 Rh3DG364300 Rh4CG183600 Rh4DG261400 Rh5BG325500 Rh5DG123300 Rh5DG336400 Rh6AG394900 Rh7AG145900
rosa_wichuraiana	Rw6G034550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	63
AccB1I	GGYRCC	1 cut(s)	199
AclWI	GGATC	1 cut(s)	149
AcsI	RAATTY	1 cut(s)	424
AcuI	CTGAAG	2 cut(s)	38, 114
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	2 cut(s)	22, 98
AgsI	TTSAA	1 cut(s)	289
AjnI	CCWGG	1 cut(s)	202
AluBI	AGCT	3 cut(s)	305, 334, 373
AluI	AGCT	3 cut(s)	305, 334, 373
AlwI	GGATC	1 cut(s)	149
AoxI	GGCC	1 cut(s)	142
ApaI	GGGCCC	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	424
AseI	ATTAAT	1 cut(s)	360
Asp700I	GAANNNNTTC	1 cut(s)	293
AspS9I	GGNCC	2 cut(s)	142, 143
AsuII	TTCGAA	1 cut(s)	84
BaeGI	GKGCMC	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	199
BanII	GRGCYC	1 cut(s)	146
BbsI	GAAGAC	1 cut(s)	109
BccI	CCATC	1 cut(s)	190
BciT130I	CCWGG	1 cut(s)	204
BmcAI	AGTACT	1 cut(s)	341
Bme1390I	CCNGG	1 cut(s)	204
BmgT120I	GGNCC	2 cut(s)	142, 143
BmiI	GGNNCC	3 cut(s)	143, 144, 201
BmrFI	CCNGG	1 cut(s)	204
BpiI	GAAGAC	1 cut(s)	109
Bpu14I	TTCGAA	1 cut(s)	84
BpuEI	CTTGAG	1 cut(s)	356
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 98
Bse1I	ACTGG	2 cut(s)	245, 347
BseBI	CCWGG	1 cut(s)	204
BseGI	GGATG	2 cut(s)	163, 201
BseLI	CCNNNNNNNGG	2 cut(s)	22, 98
BseMII	CTCAG	2 cut(s)	302, 321
BseNI	ACTGG	2 cut(s)	245, 347
BseSI	GKGCMC	1 cut(s)	146
BshFI	GGCC	1 cut(s)	144
BshNI	GGYRCC	1 cut(s)	199
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	2 cut(s)	22, 98
BsmFI	GGGAC	1 cut(s)	215
BsnI	GGCC	1 cut(s)	144
Bsp119I	TTCGAA	1 cut(s)	84
Bsp120I	GGGCCC	1 cut(s)	142
Bsp1286I	GDGCHC	1 cut(s)	146
Bsp143I	GATC	1 cut(s)	154
BspANI	GGCC	1 cut(s)	144
BspCNI	CTCAG	2 cut(s)	303, 322
BspLI	GGNNCC	3 cut(s)	143, 144, 201
BspPI	GGATC	1 cut(s)	149
BspT104I	TTCGAA	1 cut(s)	84
BspT107I	GGYRCC	1 cut(s)	199
BsrI	ACTGG	2 cut(s)	245, 347
BssMI	GATC	1 cut(s)	154
Bst2UI	CCWGG	1 cut(s)	204
Bst6I	CTCTTC	1 cut(s)	129
BstBI	TTCGAA	1 cut(s)	84
BstDEI	CTNAG	2 cut(s)	311, 330
BstENI	CCTNNNNNAGG	2 cut(s)	20, 96
BstF5I	GGATG	2 cut(s)	163, 201
BstKTI	GATC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	154
BstMWI	GCNNNNNNNGC	1 cut(s)	331
BstNI	CCWGG	1 cut(s)	204
BstSCI	CCNGG	1 cut(s)	202
BstSLI	GKGCMC	1 cut(s)	146
BstV2I	GAAGAC	1 cut(s)	109
BsuRI	GGCC	1 cut(s)	144
BtsCI	GGATG	2 cut(s)	163, 201
BtsIMutI	CAGTG	1 cut(s)	308
Cfr13I	GGNCC	2 cut(s)	142, 143
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	1 cut(s)	257
CviJI	RGCY	5 cut(s)	144, 207, 305, 334, 373
CviKI_1	RGCY	5 cut(s)	144, 207, 305, 334, 373
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	2 cut(s)	311, 330
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	146
Eco57I	CTGAAG	2 cut(s)	38, 114
EcoNI	CCTNNNNNAGG	2 cut(s)	20, 96
EcoO109I	RGGNCCY	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	202
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	146
FaeI	CATG	1 cut(s)	260
FalI	AAGNNNNNCTT	2 cut(s)	90, 122
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	1 cut(s)	256
FauNDI	CATATG	1 cut(s)	250
FokI	GGATG	2 cut(s)	150, 208
FriOI	GRGCYC	1 cut(s)	146
HaeIII	GGCC	1 cut(s)	144
Hin1II	CATG	1 cut(s)	260
HinfI	GANTC	4 cut(s)	10, 36, 77, 86
Hpy188I	TCNGA	1 cut(s)	331
Hpy188III	TCNNGA	4 cut(s)	16, 74, 92, 110
HpyAV	CCTTC	4 cut(s)	16, 92, 304, 336
HpyCH4V	TGCA	3 cut(s)	4, 256, 414
HpyF10VI	GCNNNNNNNGC	1 cut(s)	331
HpyF3I	CTNAG	2 cut(s)	311, 330
Hsp92II	CATG	1 cut(s)	260
Kzo9I	GATC	1 cut(s)	154
LmnI	GCTCC	1 cut(s)	310
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	6 cut(s)	31, 107, 114, 146, 191, 197
MhlI	GDGCHC	1 cut(s)	146
MluCI	AATT	4 cut(s)	45, 218, 361, 424
MnlI	CCTC	4 cut(s)	132, 168, 253, 262
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	293
MseI	TTAA	5 cut(s)	44, 48, 69, 360, 390
MspR9I	CCNGG	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	204
MwoI	GCNNNNNNNGC	1 cut(s)	331
NdeI	CATATG	1 cut(s)	250
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	1 cut(s)	260
NlaIV	GGNNCC	3 cut(s)	143, 144, 201
NsiI	ATGCAT	1 cut(s)	6
NspV	TTCGAA	1 cut(s)	84
PacI	TTAATTAA	1 cut(s)	48
PdmI	GAANNNNTTC	1 cut(s)	293
PfeI	GAWTC	4 cut(s)	10, 36, 77, 86
PshBI	ATTAAT	1 cut(s)	360
PsiI	TTATAA	1 cut(s)	63
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PspN4I	GGNNCC	3 cut(s)	143, 144, 201
PspOMI	GGGCCC	1 cut(s)	142
PspPI	GGNCC	2 cut(s)	142, 143
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
SaqAI	TTAA	5 cut(s)	44, 48, 69, 360, 390
Sau3AI	GATC	1 cut(s)	154
Sau96I	GGNCC	2 cut(s)	142, 143
ScaI	AGTACT	1 cut(s)	341
ScrFI	CCNGG	1 cut(s)	204
SduI	GDGCHC	1 cut(s)	146
SetI	ASST	5 cut(s)	264, 307, 322, 336, 375
SfuI	TTCGAA	1 cut(s)	84
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	4 cut(s)	45, 218, 361, 424
StyD4I	CCNGG	1 cut(s)	202
TaqI	TCGA	1 cut(s)	84
TasI	AATT	4 cut(s)	45, 218, 361, 424
TatI	WGTACW	1 cut(s)	339
TfiI	GAWTC	4 cut(s)	10, 36, 77, 86
Tru1I	TTAA	5 cut(s)	44, 48, 69, 360, 390
Tru9I	TTAA	5 cut(s)	44, 48, 69, 360, 390
TscAI	CASTG	1 cut(s)	315
TspDTI	ATGAA	6 cut(s)	69, 192, 198, 199, 240, 417
TspRI	CASTG	1 cut(s)	315
VspI	ATTAAT	1 cut(s)	360
XagI	CCTNNNNNAGG	2 cut(s)	20, 96
XapI	RAATTY	1 cut(s)	424
XmnI	GAANNNNTTC	1 cut(s)	293
ZrmI	AGTACT	1 cut(s)	341
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.