RLG00000014852

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0017847
Physical Location & Seq
Forward (+)
58539046 .. 58539950
905 bp
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UTR
Exon/CDS
Intron
RLM00000014852

Sequence Viewer

Length: 453 bp
ATGTCAAAGTCATCTTCTGCAGCCATAGTTGGAGGTGCTGTTGGGGCACTTGCCTTGGTGGTCATCGGATTCATGTCGTTCTGCAAGGCACAATGTAATAAGCATTTCCCCAACAAGAACTCAAAGACTGGTTCTTTGGATCCATGTGCAATAGTTGAGCTGACTAGAGGTGGACCTAGTTCAGCAAGGCACTTCACAACGGAGGAGTTAGAGCAAGCTACCAAGCATTTTGATGAAAGCAATCTTCTGGGATATGGAAGTTTTGGACTTGAATTTGTCTCAGAGGTAATGTACTTGTCGCAGATTCATCACCGAATCATAGTTAAAATACTGAGTTACTGCCACGAAAGTCAAATGTTGGTTTTTGAATATTTACCAAATGGAAGCATGTGCAATCACCTATATGATACTAAACAGGATCCATCAACTAAACTAGAGTTTAAGCAAAGGTGA

Protein Analysis

151

Amino Acids

16.61

Weight (kDa)

7.04

Isoelectric Point (pI)

41.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 91 - 144 2.6e-06 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 134, 147, 413, 426
AcsI RAATTY 1 cut(s) 272
AfaI GTAC 1 cut(s) 293
AgsI TTSAA 2 cut(s) 272, 368
AluBI AGCT 2 cut(s) 160, 218
AluI AGCT 2 cut(s) 160, 218
Alw26I GTCTC 1 cut(s) 283
AlwI GGATC 4 cut(s) 134, 147, 413, 426
ApeKI GCWGC 1 cut(s) 20
ApoI RAATTY 1 cut(s) 272
ArsI GACNNNNNNTTYG 2 cut(s) 118, 150
AspS9I GGNCC 1 cut(s) 173
AsuHPI GGTGA 2 cut(s) 302, 389
AvaII GGWCC 1 cut(s) 173
BaeGI GKGCMC 1 cut(s) 49
BamHI GGATCC 2 cut(s) 139, 418
BbvI GCAGC 1 cut(s) 32
BccI CCATC 1 cut(s) 430
BcoDI GTCTC 1 cut(s) 283
BfaI CTAG 3 cut(s) 165, 177, 434
BfmI CTRYAG 1 cut(s) 18
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
Bme18I GGWCC 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 2 cut(s) 141, 420
BsaJI CCNNGG 1 cut(s) 54
BsaXI ACNNNNNCTCC 2 cut(s) 24, 54
Bse1I ACTGG 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 54
BseMII CTCAG 2 cut(s) 294, 323
BseNI ACTGG 1 cut(s) 133
BseRI GAGGAG 1 cut(s) 218
BseSI GKGCMC 1 cut(s) 49
BseXI GCAGC 1 cut(s) 32
BsmAI GTCTC 1 cut(s) 283
Bsp1286I GDGCHC 1 cut(s) 49
Bsp143I GATC 2 cut(s) 139, 418
BspCNI CTCAG 2 cut(s) 293, 324
BspLI GGNNCC 2 cut(s) 141, 420
BspMAI CTGCAG 1 cut(s) 22
BspPI GGATC 4 cut(s) 134, 147, 413, 426
BsrI ACTGG 1 cut(s) 133
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 2 cut(s) 139, 418
BssT1I CCWWGG 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 216
BstDEI CTNAG 2 cut(s) 280, 332
BstKTI GATC 2 cut(s) 142, 421
BstMAI GTCTC 1 cut(s) 283
BstMBI GATC 2 cut(s) 139, 418
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstNSI RCATGY 1 cut(s) 391
BstSFI CTRYAG 1 cut(s) 18
BstSLI GKGCMC 1 cut(s) 49
BstV1I GCAGC 1 cut(s) 32
BstX2I RGATCY 2 cut(s) 139, 418
BstYI RGATCY 2 cut(s) 139, 418
Cac8I GCNNGC 1 cut(s) 216
Cfr13I GGNCC 1 cut(s) 173
Csp6I GTAC 1 cut(s) 292
CviAII CATG 3 cut(s) 73, 144, 388
CviJI RGCY 3 cut(s) 23, 160, 218
CviKI_1 RGCY 3 cut(s) 23, 160, 218
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 2 cut(s) 280, 332
DpnI GATC 2 cut(s) 141, 420
DpnII GATC 2 cut(s) 139, 418
Eco130I CCWWGG 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 173
EcoT14I CCWWGG 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 3 cut(s) 76, 147, 391
FaiI YATR 8 cut(s) 26, 74, 145, 255, 320, 389, 403, 405
FatI CATG 3 cut(s) 72, 143, 387
Fnu4HI GCNGC 1 cut(s) 21
Fsp4HI GCNGC 1 cut(s) 21
FspBI CTAG 3 cut(s) 165, 177, 434
GluI GCNGC 1 cut(s) 21
Hin1II CATG 3 cut(s) 76, 147, 391
HinfI GANTC 3 cut(s) 69, 304, 315
HphI GGTGA 2 cut(s) 302, 389
Hpy166II GTNNAC 1 cut(s) 173
Hpy188I TCNGA 2 cut(s) 68, 283
Hpy8I GTNNAC 1 cut(s) 173
HpyCH4V TGCA 4 cut(s) 20, 84, 149, 393
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 2 cut(s) 280, 332
Hsp92II CATG 3 cut(s) 76, 147, 391
Kzo9I GATC 2 cut(s) 139, 418
LpnPI CCDG 3 cut(s) 114, 233, 401
Lsp1109I GCAGC 1 cut(s) 32
MaeI CTAG 3 cut(s) 165, 177, 434
MaeIII GTNAC 1 cut(s) 335
MalI GATC 2 cut(s) 141, 420
MboI GATC 2 cut(s) 139, 418
MboII GAAGA 2 cut(s) 6, 236
MflI RGATCY 2 cut(s) 139, 418
MhlI GDGCHC 1 cut(s) 49
MluCI AATT 1 cut(s) 272
MmeI TCCRAC 1 cut(s) 10
MnlI CCTC 4 cut(s) 26, 161, 196, 277
MseI TTAA 2 cut(s) 324, 441
MslI CAYNNNNRTG 2 cut(s) 231, 402
MwoI GCNNNNNNNGC 1 cut(s) 44
NdeII GATC 2 cut(s) 139, 418
NlaIII CATG 3 cut(s) 76, 147, 391
NlaIV GGNNCC 2 cut(s) 141, 420
NspI RCATGY 1 cut(s) 391
PfeI GAWTC 3 cut(s) 69, 304, 315
PkrI GCNGC 1 cut(s) 22
PspN4I GGNNCC 2 cut(s) 141, 420
PspPI GGNCC 1 cut(s) 173
PstI CTGCAG 1 cut(s) 22
PsuI RGATCY 2 cut(s) 139, 418
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
RseI CAYNNNNRTG 2 cut(s) 231, 402
SaqAI TTAA 2 cut(s) 324, 441
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 2 cut(s) 139, 418
Sau96I GGNCC 1 cut(s) 173
SduI GDGCHC 1 cut(s) 49
SetI ASST 8 cut(s) 37, 162, 172, 178, 220, 288, 402, 452
SfcI CTRYAG 1 cut(s) 18
SinI GGWCC 1 cut(s) 173
SmiMI CAYNNNNRTG 2 cut(s) 231, 402
Sse9I AATT 1 cut(s) 272
SspI AATATT 1 cut(s) 371
SspMI CTAG 3 cut(s) 165, 177, 434
StyI CCWWGG 1 cut(s) 54
TasI AATT 1 cut(s) 272
TatI WGTACW 1 cut(s) 291
TfiI GAWTC 3 cut(s) 69, 304, 315
Tru1I TTAA 2 cut(s) 324, 441
Tru9I TTAA 2 cut(s) 324, 441
TseI GCWGC 1 cut(s) 20
TspDTI ATGAA 3 cut(s) 61, 249, 296
TspGWI ACGGA 1 cut(s) 215
VpaK11BI GGWCC 1 cut(s) 173
XapI RAATTY 1 cut(s) 272
XceI RCATGY 1 cut(s) 391
XspI CTAG 3 cut(s) 165, 177, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.