Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0017847

Physical Location & Seq

Genomic Coordinates Reverse (-)

13334999 .. 13335900

Gene Structure 902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG087200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGTCAAAGTCATCTTCTACAGCCACAGTTGGAGGTGCTGTTGGGGCACTTGCCTTGGTGGCAATAGTCGTCGGATTCATGTCGTTCTGCAAGGCACAATGTAATAAGCATTTCCCCAACAAGAACTCGAAGACTGGTTCTTCGGATCCATCTGCAATAGTTGAGCTGACTAGAGGTGGACCTAGTTCAGCAAGGCACTTCACAATGGAGGAGTTAGAGCAAGCTACCAAGCATTTTGATGAAAGCAGTCTTCTGGGATATGGAAGTTTTGGACTTGTTTATAAAGGTTTGCTCCGTGATGGGACAGTTGTGGCTATCAAAAGGCGCCCCGGTGCTCCTAGACAGGAATTTGGCTCAGAGTTACATATATATGCCATTCATTTTCTGGCAGATACTAAACAGGATCCATCAACTAAACTAGAGTTTAAGCAAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

145

Amino Acids

15.64

Weight (kDa)

9.36

Isoelectric Point (pI)

47.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017847)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000014852
rosa_multiflora	Rmu_sc0006952.1_g000024 Rmu_ssc0000245.1_g000021
rosa_rugosa	Rorug05G0454100 Rorug05G0454200 Rorug05G0454300
rosa_samantha	Rh3BG314000 Rh4AG100900 Rh4DG087200 Rh5AG287500 Rh5DG542900 Rh5DG549300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	282
AccB1I	GGYRCC	1 cut(s)	324
AclWI	GGATC	4 cut(s)	140, 153, 398, 411
AcsI	RAATTY	1 cut(s)	347
AcyI	GRCGYC	1 cut(s)	325
AluBI	AGCT	2 cut(s)	166, 224
AluI	AGCT	2 cut(s)	166, 224
Alw21I	GWGCWC	1 cut(s)	337
AlwI	GGATC	4 cut(s)	140, 153, 398, 411
ApoI	RAATTY	1 cut(s)	347
ArsI	GACNNNNNNTTYG	2 cut(s)	124, 156
AspLEI	GCGC	1 cut(s)	327
AspS9I	GGNCC	1 cut(s)	179
AsuC2I	CCSGG	1 cut(s)	330
AvaII	GGWCC	1 cut(s)	179
BaeGI	GKGCMC	1 cut(s)	49
BamHI	GGATCC	2 cut(s)	145, 403
BanI	GGYRCC	1 cut(s)	324
BbsI	GAAGAC	2 cut(s)	137, 242
Bbv12I	GWGCWC	1 cut(s)	337
BccI	CCATC	3 cut(s)	157, 293, 415
BcnI	CCSGG	1 cut(s)	330
BfaI	CTAG	4 cut(s)	171, 183, 339, 419
BfmI	CTRYAG	1 cut(s)	18
BfoI	RGCGCY	1 cut(s)	328
BglI	GCCNNNNNGGC	1 cut(s)	59
Bme1390I	CCNGG	1 cut(s)	330
Bme18I	GGWCC	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	3 cut(s)	147, 326, 405
BmrFI	CCNGG	1 cut(s)	330
BpiI	GAAGAC	2 cut(s)	137, 242
BpuMI	CCSGG	1 cut(s)	330
BsaHI	GRCGYC	1 cut(s)	325
BsaJI	CCNNGG	2 cut(s)	54, 328
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bse1I	ACTGG	1 cut(s)	139
BseDI	CCNNGG	2 cut(s)	54, 328
BseMII	CTCAG	1 cut(s)	369
BseNI	ACTGG	1 cut(s)	139
BseRI	GAGGAG	1 cut(s)	224
BseSI	GKGCMC	1 cut(s)	49
BshNI	GGYRCC	1 cut(s)	324
BsiHKAI	GWGCWC	1 cut(s)	337
BsiSI	CCGG	1 cut(s)	330
BslFI	GGGAC	1 cut(s)	316
BsmFI	GGGAC	1 cut(s)	316
Bsp1286I	GDGCHC	2 cut(s)	49, 337
Bsp143I	GATC	2 cut(s)	145, 403
BspCNI	CTCAG	1 cut(s)	368
BspLI	GGNNCC	3 cut(s)	147, 326, 405
BspPI	GGATC	4 cut(s)	140, 153, 398, 411
BspT107I	GGYRCC	1 cut(s)	324
BsrI	ACTGG	1 cut(s)	139
BssECI	CCNNGG	2 cut(s)	54, 328
BssMI	GATC	2 cut(s)	145, 403
BssNI	GRCGYC	1 cut(s)	325
BssT1I	CCWWGG	1 cut(s)	54
Bst4CI	ACNGT	2 cut(s)	28, 307
BstACI	GRCGYC	1 cut(s)	325
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	355
BstH2I	RGCGCY	1 cut(s)	328
BstHHI	GCGC	1 cut(s)	327
BstKTI	GATC	2 cut(s)	148, 406
BstMBI	GATC	2 cut(s)	145, 403
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 59
BstSCI	CCNGG	1 cut(s)	328
BstSFI	CTRYAG	1 cut(s)	18
BstSLI	GKGCMC	1 cut(s)	49
BstV2I	GAAGAC	2 cut(s)	137, 242
BstX2I	RGATCY	2 cut(s)	145, 403
BstYI	RGATCY	2 cut(s)	145, 403
Cac8I	GCNNGC	1 cut(s)	222
CfoI	GCGC	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	179
CviAII	CATG	1 cut(s)	79
CviJI	RGCY	5 cut(s)	23, 166, 224, 314, 354
CviKI_1	RGCY	5 cut(s)	23, 166, 224, 314, 354
DdeI	CTNAG	1 cut(s)	355
DinI	GGCGCC	1 cut(s)	326
DpnI	GATC	2 cut(s)	147, 405
DpnII	GATC	2 cut(s)	145, 403
Eco130I	CCWWGG	1 cut(s)	54
Eco47I	GGWCC	1 cut(s)	179
EcoT14I	CCWWGG	1 cut(s)	54
EgeI	GGCGCC	1 cut(s)	326
EheI	GGCGCC	1 cut(s)	326
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	1 cut(s)	82
FaiI	YATR	7 cut(s)	80, 261, 282, 366, 368, 370, 372
FaqI	GGGAC	1 cut(s)	316
FatI	CATG	1 cut(s)	78
FspBI	CTAG	4 cut(s)	171, 183, 339, 419
GlaI	GCGC	1 cut(s)	326
HaeII	RGCGCY	1 cut(s)	328
HapII	CCGG	1 cut(s)	330
HhaI	GCGC	1 cut(s)	327
Hin1I	GRCGYC	1 cut(s)	325
Hin1II	CATG	1 cut(s)	82
Hin6I	GCGC	1 cut(s)	325
HinP1I	GCGC	1 cut(s)	325
HinfI	GANTC	1 cut(s)	75
HpaII	CCGG	1 cut(s)	330
Hpy166II	GTNNAC	1 cut(s)	179
Hpy188I	TCNGA	3 cut(s)	74, 145, 358
Hpy8I	GTNNAC	1 cut(s)	179
Hpy99I	CGWCG	1 cut(s)	74
HpyCH4III	ACNGT	2 cut(s)	28, 307
HpyCH4V	TGCA	2 cut(s)	90, 155
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 59
HpyF3I	CTNAG	1 cut(s)	355
Hsp92I	GRCGYC	1 cut(s)	325
Hsp92II	CATG	1 cut(s)	82
HspAI	GCGC	1 cut(s)	325
KasI	GGCGCC	1 cut(s)	324
Kzo9I	GATC	2 cut(s)	145, 403
LmnI	GCTCC	2 cut(s)	297, 340
LpnPI	CCDG	6 cut(s)	120, 239, 329, 343, 371, 386
MaeI	CTAG	4 cut(s)	171, 183, 339, 419
MaeIII	GTNAC	1 cut(s)	360
MalI	GATC	2 cut(s)	147, 405
MboI	GATC	2 cut(s)	145, 403
MboII	GAAGA	4 cut(s)	6, 132, 142, 242
MflI	RGATCY	2 cut(s)	145, 403
MhlI	GDGCHC	2 cut(s)	49, 337
MluCI	AATT	1 cut(s)	347
Mly113I	GGCGCC	1 cut(s)	325
MmeI	TCCRAC	2 cut(s)	10, 52
MnlI	CCTC	3 cut(s)	26, 167, 202
MseI	TTAA	1 cut(s)	426
MslI	CAYNNNNRTG	2 cut(s)	237, 369
MspI	CCGG	1 cut(s)	330
MspR9I	CCNGG	1 cut(s)	330
MwoI	GCNNNNNNNGC	2 cut(s)	44, 59
NarI	GGCGCC	1 cut(s)	325
NciI	CCSGG	1 cut(s)	330
NdeII	GATC	2 cut(s)	145, 403
NlaIII	CATG	1 cut(s)	82
NlaIV	GGNNCC	3 cut(s)	147, 326, 405
PfeI	GAWTC	1 cut(s)	75
PluTI	GGCGCC	1 cut(s)	328
PsiI	TTATAA	1 cut(s)	282
PspN4I	GGNNCC	3 cut(s)	147, 326, 405
PspPI	GGNCC	1 cut(s)	179
PsuI	RGATCY	2 cut(s)	145, 403
RseI	CAYNNNNRTG	2 cut(s)	237, 369
SaqAI	TTAA	1 cut(s)	426
Sau3AI	GATC	2 cut(s)	145, 403
Sau96I	GGNCC	1 cut(s)	179
ScrFI	CCNGG	1 cut(s)	330
SduI	GDGCHC	2 cut(s)	49, 337
SetI	ASST	7 cut(s)	37, 168, 178, 184, 226, 289, 437
SfcI	CTRYAG	1 cut(s)	18
SfoI	GGCGCC	1 cut(s)	326
SinI	GGWCC	1 cut(s)	179
SmiMI	CAYNNNNRTG	2 cut(s)	237, 369
Sse9I	AATT	1 cut(s)	347
SspDI	GGCGCC	1 cut(s)	324
SspMI	CTAG	4 cut(s)	171, 183, 339, 419
StyD4I	CCNGG	1 cut(s)	328
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	2 cut(s)	28, 307
TaqI	TCGA	1 cut(s)	128
TasI	AATT	1 cut(s)	347
TfiI	GAWTC	1 cut(s)	75
Tru1I	TTAA	1 cut(s)	426
Tru9I	TTAA	1 cut(s)	426
TspDTI	ATGAA	3 cut(s)	67, 255, 368
TspGWI	ACGGA	1 cut(s)	284
VpaK11BI	GGWCC	1 cut(s)	179
XapI	RAATTY	1 cut(s)	347
XcmI	CCANNNNNNNNNTGG	1 cut(s)	382
XspI	CTAG	4 cut(s)	171, 183, 339, 419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.