Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0017847

Physical Location & Seq

Genomic Coordinates Reverse (-)

21467455 .. 21468851

Gene Structure 1397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG100900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGTCAAAGTCATCTTCTGCAGCCATAGTTGGAGGTGCTGTTGGGGCACTTGCCTTGGTGGCAATAATCATCGGATTCATGTCGTTCTGCAAGGCACAATGTAATAAGCATTTCACCAACAAGAACTCAAAGACTGGTTCTTCGGATCCATCTGCAATAGTTAAGCTGACTAGAGGTGGACCTAGTCCAGCAAGACACTTCACAATGGAGGAGTTAGAGCAAGCTACCAAGCATTTTGATGAAAGCAGTCTTCTGGGATATGGAAGTTTTGGACTTGTTTATAAAGGTTTACTCCGTGATGGGATGGTTGTGGCTATCAAAAGACGCCCCGGTGCTCCTAGACAGGAATTTGTCTCAGAGGCAGTACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

123

Amino Acids

13.02

Weight (kDa)

9.64

Isoelectric Point (pI)

48.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017847)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000014852
rosa_multiflora	Rmu_sc0006952.1_g000024 Rmu_ssc0000245.1_g000021
rosa_rugosa	Rorug05G0454100 Rorug05G0454200 Rorug05G0454300
rosa_samantha	Rh3BG314000 Rh4AG100900 Rh4DG087200 Rh5AG287500 Rh5DG542900 Rh5DG549300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	282
AclWI	GGATC	2 cut(s)	140, 153
AcsI	RAATTY	1 cut(s)	347
AcyI	GRCGYC	1 cut(s)	325
AfaI	GTAC	1 cut(s)	366
AluBI	AGCT	2 cut(s)	166, 224
AluI	AGCT	2 cut(s)	166, 224
Alw21I	GWGCWC	1 cut(s)	337
Alw26I	GTCTC	1 cut(s)	358
AlwI	GGATC	2 cut(s)	140, 153
ApeKI	GCWGC	1 cut(s)	20
ApoI	RAATTY	1 cut(s)	347
ArsI	GACNNNNNNTTYG	2 cut(s)	124, 156
AspS9I	GGNCC	1 cut(s)	179
AsuC2I	CCSGG	1 cut(s)	330
AsuHPI	GGTGA	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	179
BaeGI	GKGCMC	1 cut(s)	49
BamHI	GGATCC	1 cut(s)	145
BbsI	GAAGAC	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	337
BbvI	GCAGC	1 cut(s)	32
BccI	CCATC	3 cut(s)	157, 293, 298
BcnI	CCSGG	1 cut(s)	330
BcoDI	GTCTC	1 cut(s)	358
BfaI	CTAG	3 cut(s)	171, 183, 339
BfmI	CTRYAG	1 cut(s)	18
BglI	GCCNNNNNGGC	1 cut(s)	59
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
Bme1390I	CCNGG	1 cut(s)	330
Bme18I	GGWCC	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	147
BmrFI	CCNGG	1 cut(s)	330
BpiI	GAAGAC	1 cut(s)	242
BpuMI	CCSGG	1 cut(s)	330
BsaHI	GRCGYC	1 cut(s)	325
BsaJI	CCNNGG	2 cut(s)	54, 328
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bse1I	ACTGG	1 cut(s)	139
BseDI	CCNNGG	2 cut(s)	54, 328
BseGI	GGATG	1 cut(s)	309
BseMII	CTCAG	1 cut(s)	369
BseNI	ACTGG	1 cut(s)	139
BseRI	GAGGAG	1 cut(s)	224
BseSI	GKGCMC	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	337
BsiSI	CCGG	1 cut(s)	330
BsmAI	GTCTC	1 cut(s)	358
Bsp1286I	GDGCHC	2 cut(s)	49, 337
Bsp143I	GATC	1 cut(s)	145
BspCNI	CTCAG	1 cut(s)	368
BspLI	GGNNCC	1 cut(s)	147
BspMAI	CTGCAG	1 cut(s)	22
BspPI	GGATC	2 cut(s)	140, 153
BsrI	ACTGG	1 cut(s)	139
BssECI	CCNNGG	2 cut(s)	54, 328
BssMI	GATC	1 cut(s)	145
BssNI	GRCGYC	1 cut(s)	325
BssT1I	CCWWGG	1 cut(s)	54
BstACI	GRCGYC	1 cut(s)	325
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	355
BstF5I	GGATG	1 cut(s)	309
BstKTI	GATC	1 cut(s)	148
BstMAI	GTCTC	1 cut(s)	358
BstMBI	GATC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 59
BstSCI	CCNGG	1 cut(s)	328
BstSFI	CTRYAG	1 cut(s)	18
BstSLI	GKGCMC	1 cut(s)	49
BstV1I	GCAGC	1 cut(s)	32
BstV2I	GAAGAC	1 cut(s)	242
BstX2I	RGATCY	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	145
BtsCI	GGATG	1 cut(s)	309
Cac8I	GCNNGC	1 cut(s)	222
Cfr13I	GGNCC	1 cut(s)	179
CseI	GACGC	1 cut(s)	333
Csp6I	GTAC	1 cut(s)	365
CviAII	CATG	1 cut(s)	79
CviJI	RGCY	4 cut(s)	23, 166, 224, 314
CviKI_1	RGCY	4 cut(s)	23, 166, 224, 314
CviQI	GTAC	1 cut(s)	365
DdeI	CTNAG	1 cut(s)	355
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	54
Eco47I	GGWCC	1 cut(s)	179
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	1 cut(s)	82
FaiI	YATR	4 cut(s)	26, 80, 261, 282
FatI	CATG	1 cut(s)	78
Fnu4HI	GCNGC	1 cut(s)	21
FokI	GGATG	1 cut(s)	316
Fsp4HI	GCNGC	1 cut(s)	21
FspBI	CTAG	3 cut(s)	171, 183, 339
GluI	GCNGC	1 cut(s)	21
HapII	CCGG	1 cut(s)	330
HgaI	GACGC	1 cut(s)	333
Hin1I	GRCGYC	1 cut(s)	325
Hin1II	CATG	1 cut(s)	82
HinfI	GANTC	1 cut(s)	75
HpaII	CCGG	1 cut(s)	330
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	2 cut(s)	179, 290
Hpy188I	TCNGA	3 cut(s)	74, 145, 358
Hpy8I	GTNNAC	2 cut(s)	179, 290
HpyCH4V	TGCA	3 cut(s)	20, 90, 155
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 59
HpyF3I	CTNAG	1 cut(s)	355
Hsp92I	GRCGYC	1 cut(s)	325
Hsp92II	CATG	1 cut(s)	82
Kzo9I	GATC	1 cut(s)	145
LmnI	GCTCC	1 cut(s)	340
LpnPI	CCDG	5 cut(s)	120, 201, 239, 329, 343
Lsp1109I	GCAGC	1 cut(s)	32
MaeI	CTAG	3 cut(s)	171, 183, 339
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MboII	GAAGA	3 cut(s)	6, 132, 242
MflI	RGATCY	1 cut(s)	145
MhlI	GDGCHC	2 cut(s)	49, 337
MluCI	AATT	1 cut(s)	347
MmeI	TCCRAC	1 cut(s)	10
MnlI	CCTC	4 cut(s)	26, 167, 202, 352
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	237
MspI	CCGG	1 cut(s)	330
MspR9I	CCNGG	1 cut(s)	330
MwoI	GCNNNNNNNGC	2 cut(s)	44, 59
NciI	CCSGG	1 cut(s)	330
NdeII	GATC	1 cut(s)	145
NlaIII	CATG	1 cut(s)	82
NlaIV	GGNNCC	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	75
PflFI	GACNNNGTC	1 cut(s)	183
PkrI	GCNGC	1 cut(s)	22
PsiI	TTATAA	1 cut(s)	282
PspN4I	GGNNCC	1 cut(s)	147
PspPI	GGNCC	1 cut(s)	179
PstI	CTGCAG	1 cut(s)	22
PsuI	RGATCY	1 cut(s)	145
PsyI	GACNNNGTC	1 cut(s)	183
RsaI	GTAC	1 cut(s)	366
RsaNI	GTAC	1 cut(s)	365
RseI	CAYNNNNRTG	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	1 cut(s)	145
Sau96I	GGNCC	1 cut(s)	179
ScrFI	CCNGG	1 cut(s)	330
SduI	GDGCHC	2 cut(s)	49, 337
SetI	ASST	7 cut(s)	37, 168, 178, 184, 226, 289, 370
SfcI	CTRYAG	1 cut(s)	18
SinI	GGWCC	1 cut(s)	179
SmiMI	CAYNNNNRTG	1 cut(s)	237
Sse9I	AATT	1 cut(s)	347
SspMI	CTAG	3 cut(s)	171, 183, 339
StyD4I	CCNGG	1 cut(s)	328
StyI	CCWWGG	1 cut(s)	54
TasI	AATT	1 cut(s)	347
TfiI	GAWTC	1 cut(s)	75
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TseI	GCWGC	1 cut(s)	20
TspDTI	ATGAA	2 cut(s)	67, 255
TspGWI	ACGGA	1 cut(s)	284
Tth111I	GACNNNGTC	1 cut(s)	183
VpaK11BI	GGWCC	1 cut(s)	179
XapI	RAATTY	1 cut(s)	347
XspI	CTAG	3 cut(s)	171, 183, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.