Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0017847

Physical Location & Seq

Genomic Coordinates Forward (+)

62780127 .. 62780708

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0454300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGAACCACAAAACCGTCATCCAACCGAGGATGGAGGAAGCAACAAAGCCGCCGAGAATCAGATAAGAATCCTCAAGGAGCTTTACGATGACAAGGGAGTTAAGTCCCCCACTGTAGAGCAGGTTCAGAGGATCACTCTCCAGCTAAAATGGTACCGACAGATCGAGAACAAGAACGTCTTTTATTGGTTCCAGAATCAAAGGGCTCGGGAGAAGCTGAAAAAGAAGAATCTCACTTCGGATGTTCAAGTGCCCAAGCAAAGATCAGGGCTTGTTGGTGGATCCATTAATCTCAATTTTGGGTCAACTAGTTCTGCTGATGTTGGTGGATCCATCATGGAACAACGAGGAGAAGATCACCAGGAGGTTAAAGCCCTTCCACTGTTTCCCATGCACAGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGACGGAGGTGGTGGTCACGGTGGTGGCTCTTACATTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGGGAAAAGTTTCTGGAGCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

175

Amino Acids

19.5

Weight (kDa)

8.95

Isoelectric Point (pI)

44.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	19 - 72	5.5e-09	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017847)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000014852
rosa_multiflora	Rmu_sc0006952.1_g000024 Rmu_ssc0000245.1_g000021
rosa_rugosa	Rorug05G0454100 Rorug05G0454200 Rorug05G0454300
rosa_samantha	Rh3BG314000 Rh4AG100900 Rh4DG087200 Rh5AG287500 Rh5DG542900 Rh5DG549300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	112
Acc65I	GGTACC	1 cut(s)	153
AccB1I	GGYRCC	1 cut(s)	153
AciI	CCGC	2 cut(s)	51, 523
AclWI	GGATC	5 cut(s)	140, 276, 289, 324, 337
AfaI	GTAC	1 cut(s)	155
AgsI	TTSAA	1 cut(s)	248
AhlI	ACTAGT	1 cut(s)	308
AjnI	CCWGG	1 cut(s)	360
AleI	CACNNNNGTG	1 cut(s)	453
AluBI	AGCT	5 cut(s)	82, 145, 217, 478, 503
AluI	AGCT	5 cut(s)	82, 145, 217, 478, 503
Alw21I	GWGCWC	1 cut(s)	480
AlwI	GGATC	5 cut(s)	140, 276, 289, 324, 337
Ama87I	CYCGRG	1 cut(s)	207
AseI	ATTAAT	1 cut(s)	288
Asp700I	GAANNNNTTC	1 cut(s)	512
Asp718I	GGTACC	1 cut(s)	153
AsuHPI	GGTGA	1 cut(s)	350
AvaI	CYCGRG	1 cut(s)	207
BaeGI	GKGCMC	1 cut(s)	255
BamHI	GGATCC	2 cut(s)	281, 329
BanI	GGYRCC	1 cut(s)	153
BanII	GRGCYC	2 cut(s)	208, 480
BbsI	GAAGAC	1 cut(s)	428
Bbv12I	GWGCWC	1 cut(s)	480
BccI	CCATC	2 cut(s)	26, 341
BciT130I	CCWGG	1 cut(s)	362
BcuI	ACTAGT	1 cut(s)	308
BfaI	CTAG	1 cut(s)	309
BfmI	CTRYAG	1 cut(s)	114
BfuAI	ACCTGC	1 cut(s)	112
BisI	GCNGC	2 cut(s)	51, 523
BlpI	GCTNAGC	1 cut(s)	479
BlsI	GCNGC	2 cut(s)	52, 524
Bme1390I	CCNGG	1 cut(s)	362
BmeT110I	CYCGRG	1 cut(s)	207
BmiI	GGNNCC	6 cut(s)	6, 155, 191, 283, 331, 521
BmrFI	CCNGG	1 cut(s)	362
BpiI	GAAGAC	1 cut(s)	428
BplI	GAGNNNNNCTC	2 cut(s)	121, 153
BpmI	CTGGAG	1 cut(s)	125
Bpu1102I	GCTNAGC	1 cut(s)	479
BpuEI	CTTGAG	2 cut(s)	59, 494
BsaBI	GATNNNNATC	1 cut(s)	68
BsaJI	CCNNGG	1 cut(s)	27
Bse8I	GATNNNNATC	1 cut(s)	68
BseBI	CCWGG	1 cut(s)	362
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	3 cut(s)	19, 37, 247
BseJI	GATNNNNATC	1 cut(s)	68
BseMII	CTCAG	1 cut(s)	493
BseRI	GAGGAG	1 cut(s)	363
BseSI	GKGCMC	1 cut(s)	255
BseYI	CCCAGC	1 cut(s)	503
BshNI	GGYRCC	1 cut(s)	153
BsiHKAI	GWGCWC	1 cut(s)	480
BsiHKCI	CYCGRG	1 cut(s)	207
BslFI	GGGAC	1 cut(s)	91
BsmFI	GGGAC	1 cut(s)	91
BsoBI	CYCGRG	1 cut(s)	207
Bsp1286I	GDGCHC	3 cut(s)	208, 255, 480
Bsp143I	GATC	6 cut(s)	132, 162, 263, 281, 329, 355
Bsp1720I	GCTNAGC	1 cut(s)	479
BspACI	CCGC	2 cut(s)	51, 523
BspCNI	CTCAG	1 cut(s)	492
BspLI	GGNNCC	6 cut(s)	6, 155, 191, 283, 331, 521
BspMI	ACCTGC	1 cut(s)	112
BspPI	GGATC	5 cut(s)	140, 276, 289, 324, 337
BspT107I	GGYRCC	1 cut(s)	153
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	6 cut(s)	132, 162, 263, 281, 329, 355
Bst2UI	CCWGG	1 cut(s)	362
Bst4CI	ACNGT	5 cut(s)	17, 115, 384, 398, 452
BstDEI	CTNAG	1 cut(s)	479
BstF5I	GGATG	3 cut(s)	19, 37, 247
BstKTI	GATC	6 cut(s)	135, 165, 266, 284, 332, 358
BstMBI	GATC	6 cut(s)	132, 162, 263, 281, 329, 355
BstMWI	GCNNNNNNNGC	1 cut(s)	489
BstNI	CCWGG	1 cut(s)	362
BstSCI	CCNGG	1 cut(s)	360
BstSFI	CTRYAG	1 cut(s)	114
BstSLI	GKGCMC	1 cut(s)	255
BstV2I	GAAGAC	1 cut(s)	428
BstX2I	RGATCY	2 cut(s)	281, 329
BstYI	RGATCY	2 cut(s)	281, 329
BtsCI	GGATG	3 cut(s)	19, 37, 247
BtsIMutI	CAGTG	3 cut(s)	111, 380, 403
BveI	ACCTGC	1 cut(s)	112
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	3 cut(s)	337, 391, 418
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	1 cut(s)	479
DpnI	GATC	6 cut(s)	134, 164, 265, 283, 331, 357
DpnII	GATC	6 cut(s)	132, 162, 263, 281, 329, 355
Ecl136II	GAGCTC	1 cut(s)	478
Eco24I	GRGCYC	2 cut(s)	208, 480
Eco53kI	GAGCTC	1 cut(s)	478
Eco88I	CYCGRG	1 cut(s)	207
EcoICRI	GAGCTC	1 cut(s)	478
EcoRII	CCWGG	1 cut(s)	360
EcoT38I	GRGCYC	2 cut(s)	208, 480
FaeI	CATG	3 cut(s)	340, 394, 421
FaiI	YATR	3 cut(s)	338, 392, 419
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	3 cut(s)	336, 390, 417
Fnu4HI	GCNGC	2 cut(s)	51, 523
FokI	GGATG	3 cut(s)	6, 44, 254
FriOI	GRGCYC	2 cut(s)	208, 480
Fsp4HI	GCNGC	2 cut(s)	51, 523
FspBI	CTAG	1 cut(s)	309
GluI	GCNGC	2 cut(s)	51, 523
GsaI	CCCAGC	1 cut(s)	507
GsuI	CTGGAG	1 cut(s)	125
Hin1II	CATG	3 cut(s)	340, 394, 421
HincII	GTYRAC	1 cut(s)	306
HindII	GTYRAC	1 cut(s)	306
HinfI	GANTC	4 cut(s)	58, 69, 196, 229
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	1 cut(s)	306
Hpy188I	TCNGA	4 cut(s)	63, 129, 241, 433
Hpy188III	TCNNGA	4 cut(s)	166, 193, 209, 517
Hpy8I	GTNNAC	1 cut(s)	306
Hpy99I	CGWCG	1 cut(s)	437
HpyAV	CCTTC	1 cut(s)	386
HpyCH4III	ACNGT	5 cut(s)	17, 115, 384, 398, 452
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	1 cut(s)	394
HpyF10VI	GCNNNNNNNGC	1 cut(s)	489
HpyF3I	CTNAG	1 cut(s)	479
HpySE526I	ACGT	1 cut(s)	177
Hsp92II	CATG	3 cut(s)	340, 394, 421
KpnI	GGTACC	1 cut(s)	157
Kzo9I	GATC	6 cut(s)	132, 162, 263, 281, 329, 355
LmnI	GCTCC	2 cut(s)	79, 519
LpnPI	CCDG	9 cut(s)	107, 155, 206, 252, 347, 374, 489, 502, 502
MaeI	CTAG	1 cut(s)	309
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	6 cut(s)	134, 164, 265, 283, 331, 357
MboI	GATC	6 cut(s)	132, 162, 263, 281, 329, 355
MboII	GAAGA	3 cut(s)	238, 365, 433
MflI	RGATCY	2 cut(s)	281, 329
MhlI	GDGCHC	3 cut(s)	208, 255, 480
MluCI	AATT	1 cut(s)	295
MmeI	TCCRAC	2 cut(s)	47, 456
MnlI	CCTC	9 cut(s)	22, 29, 83, 123, 341, 358, 394, 431, 487
MroXI	GAANNNNTTC	1 cut(s)	512
MseI	TTAA	3 cut(s)	102, 288, 369
MslI	CAYNNNNRTG	1 cut(s)	453
MspA1I	CMGCKG	1 cut(s)	525
MspR9I	CCNGG	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	362
MwoI	GCNNNNNNNGC	1 cut(s)	489
NdeII	GATC	6 cut(s)	132, 162, 263, 281, 329, 355
NlaIII	CATG	3 cut(s)	340, 394, 421
NlaIV	GGNNCC	6 cut(s)	6, 155, 191, 283, 331, 521
NmeAIII	GCCGAG	1 cut(s)	79
NmuCI	GTSAC	1 cut(s)	446
OliI	CACNNNNGTG	1 cut(s)	453
PdmI	GAANNNNTTC	1 cut(s)	512
PfeI	GAWTC	4 cut(s)	58, 69, 196, 229
PkrI	GCNGC	2 cut(s)	52, 524
PshBI	ATTAAT	1 cut(s)	288
Psp124BI	GAGCTC	1 cut(s)	480
Psp6I	CCWGG	1 cut(s)	360
PspFI	CCCAGC	1 cut(s)	503
PspGI	CCWGG	1 cut(s)	360
PspN4I	GGNNCC	6 cut(s)	6, 155, 191, 283, 331, 521
PsrI	GAACNNNNNNTAC	2 cut(s)	108, 140
PsuI	RGATCY	2 cut(s)	281, 329
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
RseI	CAYNNNNRTG	1 cut(s)	453
SacI	GAGCTC	1 cut(s)	480
SaqAI	TTAA	3 cut(s)	102, 288, 369
SatI	GCNGC	2 cut(s)	51, 523
Sau3AI	GATC	6 cut(s)	132, 162, 263, 281, 329, 355
ScrFI	CCNGG	1 cut(s)	362
SduI	GDGCHC	3 cut(s)	208, 255, 480
SetI	ASST	9 cut(s)	84, 126, 147, 180, 219, 369, 442, 480, 505
SfcI	CTRYAG	1 cut(s)	114
SmiMI	CAYNNNNRTG	1 cut(s)	453
SmlI	CTYRAG	2 cut(s)	74, 473
SmoI	CTYRAG	2 cut(s)	74, 473
SpeI	ACTAGT	1 cut(s)	308
Sse9I	AATT	1 cut(s)	295
SsiI	CCGC	2 cut(s)	51, 523
SspMI	CTAG	1 cut(s)	309
SstI	GAGCTC	1 cut(s)	480
StyD4I	CCNGG	1 cut(s)	360
TaaI	ACNGT	5 cut(s)	17, 115, 384, 398, 452
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	1 cut(s)	165
TasI	AATT	1 cut(s)	295
TauI	GCSGC	2 cut(s)	53, 525
TfiI	GAWTC	4 cut(s)	58, 69, 196, 229
Tru1I	TTAA	3 cut(s)	102, 288, 369
Tru9I	TTAA	3 cut(s)	102, 288, 369
TscAI	CASTG	3 cut(s)	118, 387, 403
TseFI	GTSAC	1 cut(s)	446
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	1 cut(s)	434
TspGWI	ACGGA	1 cut(s)	450
TspRI	CASTG	3 cut(s)	118, 387, 403
VspI	ATTAAT	1 cut(s)	288
XmnI	GAANNNNTTC	1 cut(s)	512
XspI	CTAG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.